Wall clock time and date at job start Wed Apr 1 2020 03:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 120.00179 * 2 1 4 4 N 1.46897 * 109.47174 * 235.90403 * 3 2 1 5 5 C 1.46905 * 110.99728 * 287.33549 * 4 3 2 6 6 C 1.50700 * 109.47030 * 169.19404 * 5 4 3 7 7 H 1.08003 * 119.99988 * 354.64206 * 6 5 4 8 8 C 1.37879 * 120.00149 * 174.65153 * 6 5 4 9 9 N 1.31514 * 119.99699 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00208 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47147 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47379 * 119.99754 * 10 8 6 13 13 H 1.48494 * 109.47117 * 239.99993 * 10 8 6 14 14 C 1.46904 * 111.00322 * 163.38505 * 4 3 2 15 15 H 1.08990 * 109.47145 * 178.95348 * 14 4 3 16 16 C 1.53004 * 109.46857 * 58.94793 * 14 4 3 17 17 C 1.50702 * 109.46792 * 298.95295 * 14 4 3 18 18 O 1.21284 * 120.00109 * 0.02562 * 17 14 4 19 19 N 1.34774 * 120.00155 * 180.02562 * 17 14 4 20 20 C 1.46501 * 120.00216 * 180.02562 * 19 17 14 21 21 H 1.09001 * 109.43208 * 324.99590 * 20 19 17 22 22 C 1.53069 * 109.43385 * 205.08400 * 20 19 17 23 23 C 1.53384 * 108.31919 * 191.71157 * 22 20 19 24 24 O 1.42835 * 108.33322 * 64.76507 * 23 22 20 25 25 C 1.35840 * 117.84883 * 310.75466 * 24 23 22 26 26 C 1.39148 * 118.49353 * 197.02782 * 25 24 23 27 27 C 1.37972 * 120.21565 * 180.43269 * 26 25 24 28 28 C 1.38292 * 119.95463 * 359.97438 * 27 26 25 29 29 C 1.38105 * 119.98514 * 359.91454 * 28 27 26 30 30 C 1.38367 * 121.80705 * 17.31116 * 25 24 23 31 31 H 1.07993 * 119.99910 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.99647 * 359.72657 * 1 2 3 33 33 H 1.07999 * 119.99780 * 179.97438 * 2 1 3 34 34 H 1.09002 * 109.47047 * 355.90106 * 3 2 1 35 35 H 1.09004 * 109.46991 * 115.90220 * 3 2 1 36 36 H 1.09004 * 109.46979 * 289.18894 * 5 4 3 37 37 H 1.08993 * 109.47052 * 49.19188 * 5 4 3 38 38 H 0.97000 * 119.99762 * 180.02562 * 9 8 6 39 39 H 1.08992 * 109.46946 * 60.00892 * 16 14 4 40 40 H 1.09007 * 109.46657 * 180.02562 * 16 14 4 41 41 H 1.08997 * 109.47442 * 299.99888 * 16 14 4 42 42 H 0.97005 * 119.99811 * 359.97438 * 19 17 14 43 43 H 1.08999 * 109.69802 * 311.46068 * 22 20 19 44 44 H 1.09005 * 109.69666 * 72.05455 * 22 20 19 45 45 H 1.09000 * 109.71315 * 305.05803 * 23 22 20 46 46 H 1.08992 * 109.69292 * 184.46844 * 23 22 20 47 47 H 1.08005 * 119.89285 * 0.40489 * 26 25 24 48 48 H 1.07993 * 120.02071 * 179.97438 * 27 26 25 49 49 H 1.07993 * 120.00520 * 179.97438 * 28 27 26 50 50 H 1.07999 * 119.83969 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9808 1.3409 -1.1469 5 6 4.1218 0.4398 -0.9368 6 6 4.8937 0.2982 -2.2233 7 1 4.5219 0.7542 -3.1291 8 6 6.0743 -0.4136 -2.2442 9 7 6.5271 -0.9686 -1.1413 10 14 7.0307 -0.5897 -3.8391 11 1 6.3133 0.1215 -4.9276 12 1 8.3845 -0.0028 -3.6719 13 1 7.1542 -2.0283 -4.1859 14 6 3.4352 2.7119 -1.4150 15 1 4.1273 2.7071 -2.2570 16 6 4.1423 3.2662 -0.1766 17 6 2.2478 3.5790 -1.7457 18 8 1.1327 3.1019 -1.7564 19 7 2.4248 4.8845 -2.0295 20 6 1.2704 5.7275 -2.3504 21 1 0.5358 5.1416 -2.9027 22 6 1.7266 6.9110 -3.2073 23 6 0.5769 7.9236 -3.2820 24 8 0.3440 8.4366 -1.9695 25 6 0.2191 7.5448 -0.9525 26 6 -0.3540 7.9743 0.2405 27 6 -0.4900 7.1006 1.2996 28 6 -0.0563 5.7933 1.1764 29 6 0.5109 5.3629 -0.0070 30 6 0.6497 6.2354 -1.0737 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5399 0.9353 0.0045 33 1 1.8500 -0.9353 0.0004 34 1 1.3575 2.1322 -0.0735 35 1 2.6340 1.3952 0.9245 36 1 4.7731 0.8519 -0.1659 37 1 3.7590 -0.5383 -0.6212 38 1 7.3579 -1.4691 -1.1559 39 1 5.0011 2.6391 0.0625 40 1 4.4791 4.2837 -0.3754 41 1 3.4501 3.2710 0.6654 42 1 3.3166 5.2662 -2.0205 43 1 2.5998 7.3788 -2.7527 44 1 1.9753 6.5641 -4.2103 45 1 -0.3237 7.4309 -3.6487 46 1 0.8487 8.7391 -3.9521 47 1 -0.6931 8.9951 0.3379 48 1 -0.9349 7.4375 2.2242 49 1 -0.1619 5.1088 2.0050 50 1 0.8485 4.3413 -0.1008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292272538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:43 Heat of formation + Delta-G solvation = -10.407905 kcal Electronic energy + Delta-G solvation = -31315.844293 eV Core-core repulsion = 27309.283582 eV Total energy + Delta-G solvation = -4006.560711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15062 -39.68950 -37.60848 -37.04457 -35.38434 -33.43345 -32.71138 -31.97128 -30.74794 -30.30152 -29.43657 -27.18671 -25.72924 -24.77629 -23.92782 -23.47377 -22.47238 -21.20736 -20.36786 -19.62927 -18.78880 -17.94368 -17.11409 -16.57813 -16.56146 -16.21789 -15.91985 -15.16559 -15.03863 -14.68006 -14.65643 -14.48008 -14.35543 -13.84977 -13.80401 -13.39512 -13.20129 -13.00557 -12.90260 -12.58782 -12.32509 -12.18507 -12.15226 -11.62502 -11.59826 -11.51175 -11.42446 -11.11170 -11.06819 -10.92647 -10.80322 -10.63361 -10.59895 -10.39882 -9.95611 -9.25276 -9.08799 -9.07025 -8.84473 -8.80121 -8.46499 -8.29738 -7.20566 -6.07018 -4.08508 1.18624 1.34292 2.89910 2.92072 3.02389 3.22628 3.27032 3.35544 3.39686 3.72814 4.29471 4.39423 4.42648 4.52100 4.74870 4.81751 4.97276 4.98229 5.08539 5.15520 5.24538 5.28828 5.33218 5.38027 5.42389 5.50793 5.62781 5.67131 5.68786 5.74117 5.85981 5.93794 6.00895 6.09292 6.17123 6.30761 6.34863 6.36393 6.44953 6.49177 6.54240 6.59232 6.66571 7.13932 7.26323 7.27749 7.34490 7.45547 7.58256 7.77302 8.04822 8.14221 8.45878 8.54368 8.99977 9.56152 11.03301 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013293 B = 0.003235 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.905084 B = 8654.095013 C = 9915.362706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C 0.070 3.930 4 N -0.509 5.509 5 C 0.188 3.812 6 C -0.508 4.508 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.075 3.925 15 H 0.118 0.882 16 C -0.180 4.180 17 C 0.520 3.480 18 O -0.517 6.517 19 N -0.729 5.729 20 C 0.191 3.809 21 H 0.100 0.900 22 C -0.167 4.167 23 C 0.067 3.933 24 O -0.318 6.318 25 C 0.134 3.866 26 C -0.157 4.157 27 C -0.085 4.085 28 C -0.156 4.156 29 C -0.066 4.066 30 C -0.173 4.173 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.027 0.973 36 H 0.003 0.997 37 H 0.033 0.967 38 H 0.261 0.739 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.401 0.599 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.112 0.888 47 H 0.128 0.872 48 H 0.126 0.874 49 H 0.122 0.878 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.776 18.700 1.193 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.136 4.136 3 C -0.057 4.057 4 N -0.232 5.232 5 C 0.064 3.936 6 C -0.547 4.547 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.037 4.037 15 H 0.136 0.864 16 C -0.239 4.239 17 C 0.308 3.692 18 O -0.392 6.392 19 N -0.382 5.382 20 C 0.086 3.914 21 H 0.118 0.882 22 C -0.205 4.205 23 C -0.009 4.009 24 O -0.232 6.232 25 C 0.089 3.911 26 C -0.176 4.176 27 C -0.103 4.103 28 C -0.174 4.174 29 C -0.084 4.084 30 C -0.175 4.175 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.045 0.955 36 H 0.021 0.979 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.235 0.765 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.086 0.914 46 H 0.130 0.870 47 H 0.145 0.855 48 H 0.144 0.856 49 H 0.140 0.860 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.693 18.235 0.824 21.678 hybrid contribution 1.613 -0.044 -0.227 1.630 sum -10.080 18.191 0.597 20.805 Atomic orbital electron populations 1.23595 0.95857 1.00776 1.04066 1.22878 0.95591 0.98535 0.96555 1.21410 0.95792 0.96517 0.92013 1.62093 1.18690 1.04387 1.38066 1.19882 0.85801 0.91107 0.96840 1.21190 1.05304 1.32919 0.95257 0.91926 1.24970 0.97457 0.95681 0.96340 1.69962 1.21782 1.35146 1.26727 0.86494 0.79614 0.77941 0.83699 1.19684 1.21136 1.21023 1.21533 0.92865 0.89543 0.99750 0.86411 1.22400 1.02165 1.01082 0.98294 1.21143 0.91620 0.81300 0.75147 1.90638 1.25856 1.72790 1.49901 1.46132 1.09600 1.09536 1.72927 1.19552 0.89070 0.90993 0.91774 0.88211 1.22506 0.99707 0.96296 1.01995 1.22932 0.97665 0.98029 0.82269 1.85978 1.87435 1.34014 1.15811 1.18690 0.95874 0.87942 0.88587 1.20528 1.03882 1.00944 0.92220 1.20940 0.98252 0.93324 0.97830 1.21097 1.01838 0.96251 0.98232 1.21335 0.95374 0.99987 0.91707 1.20231 1.05503 0.93473 0.98260 0.89370 0.89108 0.87689 0.89769 0.95524 0.97896 0.94904 0.92965 0.89914 0.92818 0.92910 0.76453 0.89749 0.88840 0.91429 0.87040 0.85453 0.85597 0.85951 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.43 14.32 29.01 0.42 -3.02 16 2 C -0.12 -2.21 9.30 -36.03 -0.34 -2.55 16 3 C 0.07 1.35 3.98 -4.98 -0.02 1.33 16 4 N -0.51 -10.81 4.21 -230.91 -0.97 -11.78 16 5 C 0.19 4.67 4.41 -4.97 -0.02 4.65 16 6 C -0.51 -13.64 8.34 -34.44 -0.29 -13.93 16 7 H 0.06 1.69 7.40 -52.48 -0.39 1.30 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -25.71 13.29 55.43 0.74 -24.98 16 10 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.08 1.36 2.63 -68.86 -0.18 1.18 16 15 H 0.12 2.25 6.90 -51.93 -0.36 1.89 16 16 C -0.18 -2.86 8.44 37.16 0.31 -2.55 16 17 C 0.52 8.41 5.28 -10.99 -0.06 8.35 16 18 O -0.52 -9.75 12.03 5.55 0.07 -9.69 16 19 N -0.73 -9.02 4.75 -54.86 -0.26 -9.28 16 20 C 0.19 2.20 2.70 -69.01 -0.19 2.02 16 21 H 0.10 1.31 7.57 -51.93 -0.39 0.92 16 22 C -0.17 -1.37 5.67 -26.50 -0.15 -1.52 16 23 C 0.07 0.52 7.03 37.36 0.26 0.78 16 24 O -0.32 -3.41 10.27 -19.24 -0.20 -3.61 16 25 C 0.13 1.60 6.47 -39.20 -0.25 1.35 16 26 C -0.16 -1.72 9.94 -39.34 -0.39 -2.11 16 27 C -0.09 -0.89 10.04 -39.66 -0.40 -1.29 16 28 C -0.16 -1.86 10.04 -39.61 -0.40 -2.26 16 29 C -0.07 -0.90 9.08 -39.53 -0.36 -1.26 16 30 C -0.17 -2.18 5.56 -104.44 -0.58 -2.76 16 31 H 0.09 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.09 1.49 7.84 -52.49 -0.41 1.08 16 33 H 0.11 2.07 7.11 -52.49 -0.37 1.70 16 34 H 0.08 1.59 4.58 -51.93 -0.24 1.35 16 35 H 0.03 0.51 7.18 -51.93 -0.37 0.14 16 36 H 0.00 0.09 6.14 -51.93 -0.32 -0.23 16 37 H 0.03 0.89 6.71 -51.93 -0.35 0.54 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 39 H 0.08 1.51 6.39 -51.93 -0.33 1.18 16 40 H 0.05 0.69 7.57 -51.92 -0.39 0.29 16 41 H 0.05 0.82 6.78 -51.93 -0.35 0.46 16 42 H 0.40 4.11 8.00 -40.82 -0.33 3.79 16 43 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 48 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 49 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 50 H 0.13 2.08 4.31 -52.49 -0.23 1.85 16 LS Contribution 391.64 15.07 5.90 5.90 Total: -1.00 -31.40 391.64 -9.82 -41.22 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -7.35 Total: 8.34 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -2.73 Total: -12.11 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.50 Total: -46.03 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.13 Total: -13.30 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.40 -9.82 -41.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292272538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.814 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds