Wall clock time and date at job start Wed Apr 1 2020 03:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 120.00179 * 2 1 4 4 N 1.46897 * 109.47174 * 235.90403 * 3 2 1 5 5 C 1.46905 * 110.99728 * 287.33549 * 4 3 2 6 6 C 1.50700 * 109.47030 * 169.19404 * 5 4 3 7 7 H 1.08003 * 119.99988 * 354.64206 * 6 5 4 8 8 C 1.37879 * 120.00149 * 174.65153 * 6 5 4 9 9 N 1.31514 * 119.99699 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00208 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47147 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47379 * 119.99754 * 10 8 6 13 13 H 1.48494 * 109.47117 * 239.99993 * 10 8 6 14 14 C 1.46904 * 111.00322 * 163.38505 * 4 3 2 15 15 H 1.08990 * 109.47145 * 178.95348 * 14 4 3 16 16 C 1.53004 * 109.46857 * 58.94793 * 14 4 3 17 17 C 1.50702 * 109.46792 * 298.95295 * 14 4 3 18 18 O 1.21284 * 120.00109 * 0.02562 * 17 14 4 19 19 N 1.34774 * 120.00155 * 180.02562 * 17 14 4 20 20 C 1.46501 * 120.00216 * 180.02562 * 19 17 14 21 21 H 1.09001 * 109.43208 * 324.99590 * 20 19 17 22 22 C 1.53069 * 109.43385 * 205.08400 * 20 19 17 23 23 C 1.53384 * 108.31919 * 191.71157 * 22 20 19 24 24 O 1.42835 * 108.33322 * 64.76507 * 23 22 20 25 25 C 1.35840 * 117.84883 * 310.75466 * 24 23 22 26 26 C 1.39148 * 118.49353 * 197.02782 * 25 24 23 27 27 C 1.37972 * 120.21565 * 180.43269 * 26 25 24 28 28 C 1.38292 * 119.95463 * 359.97438 * 27 26 25 29 29 C 1.38105 * 119.98514 * 359.91454 * 28 27 26 30 30 C 1.38367 * 121.80705 * 17.31116 * 25 24 23 31 31 H 1.07993 * 119.99910 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.99647 * 359.72657 * 1 2 3 33 33 H 1.07999 * 119.99780 * 179.97438 * 2 1 3 34 34 H 1.09002 * 109.47047 * 355.90106 * 3 2 1 35 35 H 1.09004 * 109.46991 * 115.90220 * 3 2 1 36 36 H 1.09004 * 109.46979 * 289.18894 * 5 4 3 37 37 H 1.08993 * 109.47052 * 49.19188 * 5 4 3 38 38 H 0.97000 * 119.99762 * 180.02562 * 9 8 6 39 39 H 1.08992 * 109.46946 * 60.00892 * 16 14 4 40 40 H 1.09007 * 109.46657 * 180.02562 * 16 14 4 41 41 H 1.08997 * 109.47442 * 299.99888 * 16 14 4 42 42 H 0.97005 * 119.99811 * 359.97438 * 19 17 14 43 43 H 1.08999 * 109.69802 * 311.46068 * 22 20 19 44 44 H 1.09005 * 109.69666 * 72.05455 * 22 20 19 45 45 H 1.09000 * 109.71315 * 305.05803 * 23 22 20 46 46 H 1.08992 * 109.69292 * 184.46844 * 23 22 20 47 47 H 1.08005 * 119.89285 * 0.40489 * 26 25 24 48 48 H 1.07993 * 120.02071 * 179.97438 * 27 26 25 49 49 H 1.07993 * 120.00520 * 179.97438 * 28 27 26 50 50 H 1.07999 * 119.83969 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9808 1.3409 -1.1469 5 6 4.1218 0.4398 -0.9368 6 6 4.8937 0.2982 -2.2233 7 1 4.5219 0.7542 -3.1291 8 6 6.0743 -0.4136 -2.2442 9 7 6.5271 -0.9686 -1.1413 10 14 7.0307 -0.5897 -3.8391 11 1 6.3133 0.1215 -4.9276 12 1 8.3845 -0.0028 -3.6719 13 1 7.1542 -2.0283 -4.1859 14 6 3.4352 2.7119 -1.4150 15 1 4.1273 2.7071 -2.2570 16 6 4.1423 3.2662 -0.1766 17 6 2.2478 3.5790 -1.7457 18 8 1.1327 3.1019 -1.7564 19 7 2.4248 4.8845 -2.0295 20 6 1.2704 5.7275 -2.3504 21 1 0.5358 5.1416 -2.9027 22 6 1.7266 6.9110 -3.2073 23 6 0.5769 7.9236 -3.2820 24 8 0.3440 8.4366 -1.9695 25 6 0.2191 7.5448 -0.9525 26 6 -0.3540 7.9743 0.2405 27 6 -0.4900 7.1006 1.2996 28 6 -0.0563 5.7933 1.1764 29 6 0.5109 5.3629 -0.0070 30 6 0.6497 6.2354 -1.0737 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5399 0.9353 0.0045 33 1 1.8500 -0.9353 0.0004 34 1 1.3575 2.1322 -0.0735 35 1 2.6340 1.3952 0.9245 36 1 4.7731 0.8519 -0.1659 37 1 3.7590 -0.5383 -0.6212 38 1 7.3579 -1.4691 -1.1559 39 1 5.0011 2.6391 0.0625 40 1 4.4791 4.2837 -0.3754 41 1 3.4501 3.2710 0.6654 42 1 3.3166 5.2662 -2.0205 43 1 2.5998 7.3788 -2.7527 44 1 1.9753 6.5641 -4.2103 45 1 -0.3237 7.4309 -3.6487 46 1 0.8487 8.7391 -3.9521 47 1 -0.6931 8.9951 0.3379 48 1 -0.9349 7.4375 2.2242 49 1 -0.1619 5.1088 2.0050 50 1 0.8485 4.3413 -0.1008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292272538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:42 Heat of formation + Delta-G solvation = -30.306341 kcal Electronic energy + Delta-G solvation = -31316.707154 eV Core-core repulsion = 27309.283582 eV Total energy + Delta-G solvation = -4007.423572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.09097 -40.91681 -38.56770 -38.36814 -36.50225 -35.03615 -34.54037 -33.10512 -31.58647 -31.26827 -30.82243 -29.05716 -26.78065 -26.14207 -25.29097 -24.63751 -23.47516 -22.64623 -21.28166 -20.90225 -20.32694 -18.80286 -18.53186 -18.04416 -17.64236 -17.42950 -16.98195 -16.60149 -16.35339 -16.07964 -16.00214 -15.73513 -15.37069 -15.09374 -14.72645 -14.62739 -14.45064 -14.22842 -14.13373 -13.95731 -13.68733 -13.44139 -13.35350 -13.05795 -12.93105 -12.88310 -12.64440 -12.43848 -12.34589 -12.28831 -12.19805 -12.10569 -11.80858 -11.75613 -11.56810 -11.20461 -10.61509 -10.48228 -10.26924 -10.16002 -9.78775 -9.15437 -8.91546 -8.17526 -6.26934 0.30911 0.45001 1.40860 1.42532 1.45019 1.55537 1.62716 2.04432 2.37060 2.42141 2.82784 3.15366 3.40315 3.52792 3.61937 3.76536 3.79492 4.02132 4.06069 4.16596 4.19108 4.21525 4.27258 4.38691 4.41738 4.51213 4.53090 4.54909 4.60187 4.67102 4.67709 4.83261 4.84802 4.93787 4.96981 5.03080 5.07043 5.07736 5.27612 5.31658 5.37938 5.38950 5.54150 5.63474 5.67778 5.78794 5.83070 5.96366 6.08531 6.26387 6.46163 6.53719 6.64330 6.89284 7.26321 7.42603 8.92961 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013293 B = 0.003235 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.905084 B = 8654.095013 C = 9915.362706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.151 4.151 3 C 0.079 3.921 4 N -0.521 5.521 5 C 0.207 3.793 6 C -0.518 4.518 7 H 0.059 0.941 8 C 0.007 3.993 9 N -0.931 5.931 10 Si 0.963 3.037 11 H -0.264 1.264 12 H -0.276 1.276 13 H -0.284 1.284 14 C 0.072 3.928 15 H 0.105 0.895 16 C -0.168 4.168 17 C 0.529 3.471 18 O -0.546 6.546 19 N -0.710 5.710 20 C 0.191 3.809 21 H 0.081 0.919 22 C -0.159 4.159 23 C 0.062 3.938 24 O -0.324 6.324 25 C 0.129 3.871 26 C -0.162 4.162 27 C -0.080 4.080 28 C -0.167 4.167 29 C -0.089 4.089 30 C -0.185 4.185 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.021 0.979 36 H -0.015 1.015 37 H 0.002 0.998 38 H 0.263 0.737 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.413 0.587 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.070 0.930 46 H 0.144 0.856 47 H 0.147 0.853 48 H 0.155 0.845 49 H 0.130 0.870 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.402 21.363 0.135 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.170 4.170 3 C -0.048 4.048 4 N -0.245 5.245 5 C 0.081 3.919 6 C -0.557 4.557 7 H 0.077 0.923 8 C -0.191 4.191 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.188 1.188 12 H -0.201 1.201 13 H -0.210 1.210 14 C -0.040 4.040 15 H 0.123 0.877 16 C -0.227 4.227 17 C 0.316 3.684 18 O -0.424 6.424 19 N -0.363 5.363 20 C 0.086 3.914 21 H 0.099 0.901 22 C -0.196 4.196 23 C -0.013 4.013 24 O -0.239 6.239 25 C 0.083 3.917 26 C -0.180 4.180 27 C -0.098 4.098 28 C -0.185 4.185 29 C -0.107 4.107 30 C -0.187 4.187 31 H 0.129 0.871 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.039 0.961 36 H 0.002 0.998 37 H 0.020 0.980 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.250 0.750 43 H 0.110 0.890 44 H 0.129 0.871 45 H 0.088 0.912 46 H 0.162 0.838 47 H 0.165 0.835 48 H 0.173 0.827 49 H 0.148 0.852 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.313 20.949 -0.245 24.301 hybrid contribution 1.699 -0.815 0.129 1.889 sum -10.614 20.134 -0.117 22.760 Atomic orbital electron populations 1.23791 0.94938 1.02132 1.00499 1.22824 0.96513 0.97710 0.99908 1.21357 0.95347 0.97084 0.91042 1.61967 1.17537 1.05935 1.39068 1.19479 0.86349 0.90476 0.95576 1.21421 1.05751 1.32846 0.95659 0.92311 1.25805 0.98439 0.95203 0.99672 1.70084 1.22328 1.35875 1.28888 0.85426 0.78353 0.77778 0.79617 1.18849 1.20143 1.20978 1.21536 0.93819 0.88566 1.00116 0.87678 1.22257 1.00810 1.02278 0.97356 1.20641 0.90261 0.82308 0.75197 1.90619 1.26550 1.73693 1.51514 1.45913 1.10814 1.08259 1.71315 1.19661 0.88156 0.91635 0.91968 0.90116 1.22501 1.00113 0.94877 1.02150 1.23222 0.97582 0.99061 0.81420 1.85977 1.87304 1.34016 1.16583 1.18841 0.95723 0.87691 0.89424 1.20880 1.03255 1.01973 0.91917 1.21259 0.97234 0.92432 0.98869 1.21286 1.01927 0.97349 0.97971 1.21281 0.97032 0.99269 0.93140 1.20278 1.06241 0.93914 0.98231 0.87072 0.88457 0.89373 0.89071 0.96063 0.99756 0.97954 0.92775 0.92662 0.89355 0.92728 0.75015 0.88976 0.87082 0.91206 0.83842 0.83492 0.82688 0.85189 0.87031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.82 14.32 67.77 0.97 -4.85 16 2 C -0.15 -5.91 9.30 25.64 0.24 -5.67 16 3 C 0.08 3.16 3.98 85.56 0.34 3.51 16 4 N -0.52 -23.14 4.21 -884.46 -3.72 -26.86 16 5 C 0.21 10.84 4.41 85.56 0.38 11.21 16 6 C -0.52 -28.68 8.34 25.60 0.21 -28.46 16 7 H 0.06 3.23 7.40 -2.91 -0.02 3.21 16 8 C 0.01 0.39 5.46 84.66 0.46 0.86 16 9 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 10 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 11 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 12 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 14 C 0.07 2.65 2.63 44.17 0.12 2.76 16 15 H 0.11 4.11 6.90 -2.39 -0.02 4.10 16 16 C -0.17 -5.44 8.44 71.98 0.61 -4.83 16 17 C 0.53 17.25 5.28 87.66 0.46 17.71 16 18 O -0.55 -21.01 12.03 -3.04 -0.04 -21.04 16 19 N -0.71 -17.04 4.75 -445.88 -2.12 -19.16 16 20 C 0.19 4.20 2.70 44.29 0.12 4.32 16 21 H 0.08 2.11 7.57 -2.39 -0.02 2.09 16 22 C -0.16 -2.19 5.67 30.75 0.17 -2.02 16 23 C 0.06 0.78 7.03 72.11 0.51 1.29 16 24 O -0.32 -6.13 10.27 -91.76 -0.94 -7.07 16 25 C 0.13 2.84 6.47 22.52 0.15 2.98 16 26 C -0.16 -3.16 9.94 22.43 0.22 -2.94 16 27 C -0.08 -1.50 10.04 22.22 0.22 -1.28 16 28 C -0.17 -3.84 10.04 22.25 0.22 -3.62 16 29 C -0.09 -2.42 9.08 22.30 0.20 -2.21 16 30 C -0.18 -4.49 5.56 -19.75 -0.11 -4.60 16 31 H 0.11 3.14 8.06 -2.91 -0.02 3.12 16 32 H 0.10 3.11 7.84 -2.91 -0.02 3.09 16 33 H 0.09 3.72 7.11 -2.91 -0.02 3.69 16 34 H 0.09 3.55 4.58 -2.39 -0.01 3.54 16 35 H 0.02 0.86 7.18 -2.39 -0.02 0.85 16 36 H -0.02 -0.84 6.14 -2.38 -0.01 -0.85 16 37 H 0.00 0.14 6.71 -2.39 -0.02 0.12 16 38 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.05 2.10 6.39 -2.39 -0.02 2.09 16 40 H 0.09 2.18 7.57 -2.38 -0.02 2.16 16 41 H 0.05 1.73 6.78 -2.39 -0.02 1.71 16 42 H 0.41 7.83 8.00 -92.70 -0.74 7.09 16 43 H 0.09 1.17 8.11 -2.39 -0.02 1.15 16 44 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 48 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 49 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 50 H 0.11 3.54 4.31 -2.91 -0.01 3.53 16 Total: -1.00 -70.17 391.64 1.20 -68.97 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.22 Total: 30.10 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 5.50 Total: -15.84 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -5.56 Total: -100.54 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.98 Total: -28.12 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -70.17 1.20 -68.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292272538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.661 kcal (2) G-P(sol) polarization free energy of solvation -70.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds