Wall clock time and date at job start Wed Apr 1 2020 03:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.46588 * 2 1 4 4 C 1.46843 * 111.00191 * 294.20975 * 3 2 1 5 5 C 1.53046 * 109.52306 * 174.16512 * 4 3 2 6 6 C 1.53120 * 109.27998 * 59.17886 * 5 4 3 7 7 H 1.08991 * 109.57611 * 182.40855 * 6 5 4 8 8 N 1.46502 * 109.52243 * 62.24959 * 6 5 4 9 9 C 1.46496 * 119.99921 * 252.95348 * 8 6 5 10 10 S 1.65597 * 120.00086 * 73.22612 * 8 6 5 11 11 O 1.42098 * 104.27874 * 206.07052 * 10 8 6 12 12 O 1.42102 * 104.27706 * 333.92881 * 10 8 6 13 13 C 1.81401 * 104.44958 * 89.99721 * 10 8 6 14 14 C 1.52997 * 109.47552 * 173.87524 * 13 10 8 15 15 C 1.50704 * 115.54764 * 66.06232 * 14 13 10 16 16 H 1.08000 * 120.00299 * 265.18841 * 15 14 13 17 17 C 1.37880 * 119.99969 * 85.18489 * 15 14 13 18 18 N 1.31522 * 119.99554 * 2.19741 * 17 15 14 19 19 Si 1.86800 * 120.00134 * 182.19976 * 17 15 14 20 20 H 1.48499 * 109.47083 * 89.99877 * 19 17 15 21 21 H 1.48503 * 109.46845 * 210.00015 * 19 17 15 22 22 H 1.48497 * 109.46831 * 329.99942 * 19 17 15 23 23 C 1.52997 * 117.50240 * 280.39640 * 14 13 10 24 24 C 1.53000 * 117.50493 * 211.73363 * 14 13 10 25 25 C 1.53116 * 109.15767 * 302.34750 * 6 5 4 26 26 H 1.09004 * 109.50252 * 297.71071 * 25 6 5 27 27 C 1.52999 * 109.49908 * 177.59596 * 25 6 5 28 28 C 1.46856 * 110.99730 * 170.00146 * 3 2 1 29 29 H 1.08998 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47407 * 299.99482 * 1 2 3 31 31 H 1.09003 * 109.47430 * 60.00116 * 1 2 3 32 32 H 1.08994 * 109.46881 * 240.00277 * 2 1 3 33 33 H 1.08999 * 109.46991 * 120.00059 * 2 1 3 34 34 H 1.09007 * 109.46402 * 294.17685 * 4 3 2 35 35 H 1.08995 * 109.46638 * 54.15588 * 4 3 2 36 36 H 1.08999 * 109.49863 * 299.23437 * 5 4 3 37 37 H 1.09000 * 109.49937 * 179.12125 * 5 4 3 38 38 H 1.08999 * 109.47491 * 85.60585 * 9 8 6 39 39 H 1.09009 * 109.46887 * 205.60416 * 9 8 6 40 40 H 1.09000 * 109.47547 * 325.60335 * 9 8 6 41 41 H 1.08997 * 109.47198 * 293.88277 * 13 10 8 42 42 H 1.09010 * 109.46682 * 53.87631 * 13 10 8 43 43 H 0.97000 * 119.99562 * 185.01414 * 18 17 15 44 44 H 1.09003 * 117.49967 * 359.97438 * 23 14 13 45 45 H 1.09000 * 117.50134 * 145.01381 * 23 14 13 46 46 H 1.08999 * 117.49978 * 214.98085 * 24 14 13 47 47 H 1.09006 * 117.49392 * 359.97438 * 24 14 13 48 48 H 1.09001 * 109.47253 * 82.88910 * 27 25 6 49 49 H 1.09008 * 109.47020 * 202.88615 * 27 25 6 50 50 H 1.08998 * 109.47630 * 322.88631 * 27 25 6 51 51 H 1.08998 * 109.46025 * 65.82460 * 28 3 2 52 52 H 1.09004 * 109.45967 * 305.85197 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6649 2.0685 -1.2503 5 6 2.0606 3.5440 -1.1566 6 6 3.5675 3.6484 -0.9057 7 1 3.8476 4.6959 -0.7955 8 7 4.2936 3.0636 -2.0357 9 6 4.9632 1.7693 -1.8853 10 16 4.3633 3.8689 -3.4811 11 8 4.5504 2.8422 -4.4455 12 8 3.1945 4.6770 -3.4887 13 6 5.8497 4.9007 -3.3532 14 6 6.1116 5.5867 -4.6954 15 6 5.0772 6.5962 -5.1221 16 1 4.2712 6.2998 -5.7769 17 6 5.1598 7.8984 -4.6763 18 7 6.1651 8.2698 -3.9139 19 14 3.8440 9.1348 -5.1552 20 1 2.7579 9.1191 -4.1425 21 1 4.4410 10.4930 -5.2197 22 1 3.2870 8.7752 -6.4839 23 6 6.7857 4.7596 -5.7919 24 6 7.5676 5.8634 -5.0754 25 6 3.9173 2.8876 0.3762 26 1 3.4072 3.3471 1.2228 27 6 5.4297 2.9362 0.6023 28 6 3.4680 1.4312 0.2380 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1942 1.6028 -2.0817 35 1 0.5902 1.9906 -1.4147 36 1 1.5212 4.0138 -0.3341 37 1 1.8114 4.0476 -2.0906 38 1 4.2502 0.9671 -2.0755 39 1 5.7856 1.7008 -2.5974 40 1 5.3520 1.6770 -0.8712 41 1 5.7022 5.6563 -2.5816 42 1 6.7041 4.2762 -3.0915 43 1 6.1857 9.1649 -3.5407 44 1 7.0432 3.7268 -5.5569 45 1 6.4814 4.9459 -6.8219 46 1 7.7773 6.7755 -5.6342 47 1 8.3390 5.5571 -4.3688 48 1 5.6944 3.8749 1.0889 49 1 5.7294 2.1014 1.2360 50 1 5.9430 2.8668 -0.3568 51 1 3.9887 0.9684 -0.6003 52 1 3.7027 0.8902 1.1547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333404878.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:36 Heat of formation + Delta-G solvation = -23.058251 kcal Electronic energy + Delta-G solvation = -31378.714669 eV Core-core repulsion = 27507.049349 eV Total energy + Delta-G solvation = -3871.665320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32300 -38.58676 -38.01217 -37.23637 -36.76465 -34.09038 -33.71295 -33.22329 -30.92652 -29.88708 -28.29046 -27.51945 -26.60344 -24.47730 -23.45127 -22.98939 -21.69177 -21.54415 -21.03809 -19.60617 -18.39027 -18.31470 -17.18220 -16.92773 -16.81643 -16.52335 -16.33796 -15.91572 -15.68592 -15.65481 -15.18704 -14.95497 -14.88449 -14.56181 -14.04705 -13.82146 -13.67872 -13.42095 -13.26062 -13.20981 -13.10979 -12.97215 -12.90057 -12.85944 -12.76218 -12.72631 -12.48445 -12.45129 -12.33240 -12.24460 -12.09480 -11.92142 -11.84904 -11.55048 -11.35152 -11.25152 -11.00985 -10.79406 -10.51469 -10.11571 -9.70826 -9.06569 -8.20709 -6.36084 -0.54009 1.36679 1.40053 1.47813 1.92118 2.38408 2.97464 3.00700 3.07228 3.33541 3.40249 3.58136 3.79497 3.88979 4.01554 4.09623 4.16256 4.24493 4.28803 4.39520 4.43581 4.43740 4.48384 4.52942 4.56823 4.62768 4.67151 4.74906 4.78185 4.82642 4.85586 4.88030 4.95418 4.96599 4.98034 5.01510 5.08766 5.17386 5.20090 5.22723 5.30279 5.37659 5.44038 5.44686 5.48984 5.59910 5.69079 5.80311 6.17325 6.20827 6.27583 6.70291 7.36508 8.86391 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.003894 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.782250 B = 7189.702764 C = 7657.929991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 N -0.541 5.541 4 C 0.062 3.938 5 C -0.150 4.150 6 C 0.155 3.845 7 H 0.072 0.928 8 N -0.993 5.993 9 C 0.054 3.946 10 S 2.619 3.381 11 O -0.993 6.993 12 O -0.982 6.982 13 C -0.553 4.553 14 C 0.010 3.990 15 C -0.531 4.531 16 H 0.046 0.954 17 C 0.044 3.956 18 N -0.891 5.891 19 Si 0.932 3.068 20 H -0.275 1.275 21 H -0.273 1.273 22 H -0.272 1.272 23 C -0.200 4.200 24 C -0.132 4.132 25 C -0.079 4.079 26 H 0.095 0.905 27 C -0.167 4.167 28 C 0.018 3.982 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.026 0.974 33 H 0.089 0.911 34 H 0.018 0.982 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.118 0.882 42 H 0.130 0.870 43 H 0.265 0.735 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.087 0.913 48 H 0.060 0.940 49 H 0.083 0.917 50 H 0.073 0.927 51 H 0.076 0.924 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 -15.917 13.535 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 N -0.266 5.266 4 C -0.066 4.066 5 C -0.189 4.189 6 C 0.049 3.951 7 H 0.090 0.910 8 N -0.832 5.832 9 C -0.089 4.089 10 S 2.717 3.283 11 O -0.984 6.984 12 O -0.972 6.972 13 C -0.685 4.685 14 C 0.007 3.993 15 C -0.569 4.569 16 H 0.064 0.936 17 C -0.159 4.159 18 N -0.528 5.528 19 Si 0.757 3.243 20 H -0.200 1.200 21 H -0.198 1.198 22 H -0.196 1.196 23 C -0.237 4.237 24 C -0.171 4.171 25 C -0.099 4.099 26 H 0.113 0.887 27 C -0.224 4.224 28 C -0.108 4.108 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.036 0.964 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.150 0.850 41 H 0.137 0.863 42 H 0.149 0.851 43 H 0.074 0.926 44 H 0.116 0.884 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.079 0.921 49 H 0.102 0.898 50 H 0.091 0.909 51 H 0.093 0.907 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.282 -15.623 13.269 20.758 hybrid contribution 0.083 1.049 -0.926 1.402 sum -3.199 -14.574 12.343 19.364 Atomic orbital electron populations 1.21788 0.94682 1.02091 1.01877 1.22117 0.96430 0.88248 1.01038 1.61994 1.14773 1.15902 1.33896 1.21940 1.00336 0.93955 0.90341 1.22289 0.96189 0.96859 1.03547 1.20993 0.90818 0.96974 0.86326 0.91034 1.57485 1.66068 1.30725 1.28933 1.22698 0.96861 0.83179 1.06184 1.04660 0.76869 0.73883 0.72871 1.93448 1.87891 1.56891 1.60129 1.93447 1.46347 1.71668 1.85768 1.29920 1.19471 1.12704 1.06410 1.18416 0.94645 0.97235 0.88967 1.20696 1.10345 0.94372 1.31458 0.93611 1.25479 0.96550 0.99133 0.94728 1.70053 1.29700 1.20066 1.32938 0.85943 0.80166 0.78968 0.79174 1.20037 1.19797 1.19644 1.23240 1.06718 0.95970 0.97747 1.22462 0.94551 0.97643 1.02432 1.21288 0.97550 0.95623 0.95418 0.88710 1.22238 0.93763 1.03415 1.03012 1.23217 0.87658 0.96531 1.03438 0.91023 0.92068 0.93751 0.95539 0.89284 0.96387 0.90685 0.89534 0.91187 0.92747 0.91152 0.84991 0.86340 0.85132 0.92572 0.88398 0.90215 0.91526 0.89431 0.92059 0.89794 0.90865 0.90697 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.84 71.98 0.71 -1.61 16 2 C 0.05 0.82 5.68 86.30 0.49 1.31 16 3 N -0.54 -11.03 4.66 -896.34 -4.17 -15.20 16 4 C 0.06 1.61 5.08 86.33 0.44 2.05 16 5 C -0.15 -4.35 5.58 30.65 0.17 -4.18 16 6 C 0.15 4.15 2.36 45.07 0.11 4.26 16 7 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 8 N -0.99 -28.84 2.24 -516.97 -1.16 -30.00 16 9 C 0.05 1.20 6.89 127.77 0.88 2.08 16 10 S 2.62 105.09 5.10 -56.49 -0.29 104.80 16 11 O -0.99 -43.23 17.00 -127.65 -2.17 -45.40 16 12 O -0.98 -46.56 14.65 -127.65 -1.87 -48.43 16 13 C -0.55 -22.68 6.03 71.98 0.43 -22.24 16 14 C 0.01 0.46 1.39 -52.93 -0.07 0.39 16 15 C -0.53 -29.75 8.25 25.60 0.21 -29.53 16 16 H 0.05 2.68 7.81 -2.91 -0.02 2.65 16 17 C 0.04 2.42 5.42 84.65 0.46 2.88 16 18 N -0.89 -49.22 12.69 21.45 0.27 -48.95 16 19 Si 0.93 44.46 29.54 68.60 2.03 46.49 16 20 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 23 C -0.20 -8.72 9.96 30.62 0.30 -8.42 16 24 C -0.13 -5.99 9.19 30.62 0.28 -5.71 16 25 C -0.08 -1.49 2.63 -10.74 -0.03 -1.51 16 26 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 27 C -0.17 -2.56 8.26 71.98 0.59 -1.97 16 28 C 0.02 0.32 4.15 86.32 0.36 0.67 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.04 0.80 6.43 -2.39 -0.02 0.78 16 32 H 0.03 0.47 8.12 -2.39 -0.02 0.45 16 33 H 0.09 1.19 7.99 -2.39 -0.02 1.17 16 34 H 0.02 0.52 6.66 -2.38 -0.02 0.50 16 35 H 0.07 1.87 6.21 -2.39 -0.01 1.86 16 36 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.07 2.53 5.72 -2.39 -0.01 2.51 16 38 H 0.05 1.21 5.99 -2.39 -0.01 1.19 16 39 H 0.07 1.53 7.63 -2.38 -0.02 1.52 16 40 H 0.13 2.08 2.93 -2.39 -0.01 2.07 16 41 H 0.12 5.11 8.14 -2.39 -0.02 5.09 16 42 H 0.13 4.32 8.09 -2.39 -0.02 4.30 16 43 H 0.27 13.90 8.32 -92.71 -0.77 13.13 16 44 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 45 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 46 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 47 H 0.09 3.52 8.14 -2.38 -0.02 3.50 16 48 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.08 0.89 7.94 -2.38 -0.02 0.87 16 50 H 0.07 1.21 4.99 -2.39 -0.01 1.20 16 51 H 0.08 1.30 3.13 -2.73 -0.01 1.29 16 52 H 0.09 1.22 8.01 -2.39 -0.02 1.20 16 Total: -1.00 -68.68 393.45 -1.13 -69.81 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.90 Total: 28.41 kcal Atomic # 6 Polarization: -66.86 SS G_CDS: 5.34 Total: -61.53 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -5.06 Total: -94.15 kcal Atomic # 8 Polarization: -89.79 SS G_CDS: -4.04 Total: -93.83 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 105.09 SS G_CDS: -0.29 Total: 104.80 kcal Total: -68.68 -1.13 -69.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333404878.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.748 kcal (2) G-P(sol) polarization free energy of solvation -68.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds