Wall clock time and date at job start Wed Apr 1 2020 04:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47524 * 2 1 4 4 C 1.46501 * 119.99642 * 275.00155 * 3 2 1 5 5 C 1.50698 * 109.47175 * 293.34991 * 4 3 2 6 6 H 1.08000 * 119.99841 * 4.84523 * 5 4 3 7 7 C 1.37880 * 120.00036 * 184.85302 * 5 4 3 8 8 N 1.31521 * 119.99902 * 5.12642 * 7 5 4 9 9 Si 1.86802 * 119.99831 * 185.13224 * 7 5 4 10 10 H 1.48494 * 109.47097 * 64.99692 * 9 7 5 11 11 H 1.48507 * 109.46725 * 184.99637 * 9 7 5 12 12 H 1.48499 * 109.46865 * 304.99342 * 9 7 5 13 13 S 1.65602 * 120.00216 * 94.99774 * 3 2 1 14 14 O 1.42091 * 106.40256 * 148.04351 * 13 3 2 15 15 O 1.42094 * 106.40259 * 15.11960 * 13 3 2 16 16 N 1.65601 * 107.21490 * 261.58163 * 13 3 2 17 17 C 1.46503 * 119.99864 * 67.76025 * 16 13 3 18 18 H 1.08993 * 109.47179 * 4.32875 * 17 16 13 19 19 C 1.53003 * 109.46834 * 244.32825 * 17 16 13 20 20 C 1.53000 * 109.46988 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47206 * 60.00112 * 20 19 17 22 22 H 1.09001 * 109.46872 * 60.00120 * 21 20 19 23 23 C 1.53000 * 109.47206 * 179.97438 * 21 20 19 24 24 C 1.53002 * 109.47206 * 180.02562 * 23 21 20 25 25 C 1.52997 * 109.46996 * 300.00141 * 24 23 21 26 26 C 1.53000 * 109.47258 * 59.99891 * 25 24 23 27 27 C 1.52997 * 109.46996 * 300.00141 * 21 20 19 28 28 H 1.09001 * 109.47292 * 299.99722 * 27 21 20 29 29 C 1.52995 * 109.47578 * 59.99798 * 27 21 20 30 30 H 1.08995 * 109.47231 * 300.00379 * 1 2 3 31 31 H 1.09001 * 109.46959 * 60.00178 * 1 2 3 32 32 H 1.08993 * 109.47047 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47484 * 239.99561 * 2 1 3 34 34 H 1.09001 * 109.47369 * 120.00171 * 2 1 3 35 35 H 1.09001 * 109.47586 * 53.35553 * 4 3 2 36 36 H 1.09003 * 109.46838 * 173.35080 * 4 3 2 37 37 H 0.96996 * 119.99399 * 179.97438 * 8 7 5 38 38 H 0.97005 * 120.00102 * 247.47647 * 16 13 3 39 39 H 1.09005 * 109.47033 * 300.00336 * 19 17 16 40 40 H 1.08996 * 109.47271 * 60.00253 * 19 17 16 41 41 H 1.09001 * 109.47107 * 300.00375 * 20 19 17 42 42 H 1.08998 * 109.47083 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.47275 * 59.99516 * 23 21 20 44 44 H 1.09002 * 109.47045 * 300.00520 * 23 21 20 45 45 H 1.08998 * 109.46972 * 179.97438 * 24 23 21 46 46 H 1.09001 * 109.46872 * 60.00120 * 24 23 21 47 47 H 1.09005 * 109.46823 * 299.99658 * 25 24 23 48 48 H 1.08996 * 109.47212 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.47083 * 180.02562 * 26 25 24 50 50 H 1.08993 * 109.46988 * 60.00065 * 26 25 24 51 51 H 1.09002 * 109.47365 * 179.97438 * 29 27 21 52 52 H 1.09001 * 109.46871 * 59.99666 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.2456 1.4732 -2.0915 6 1 3.7253 0.5680 -1.7496 7 6 3.6283 2.0475 -3.2852 8 7 3.1171 3.2021 -3.6531 9 14 4.8725 1.1856 -4.3799 10 1 4.2973 -0.0916 -4.8727 11 1 5.2034 2.0580 -5.5353 12 1 6.1060 0.9055 -3.6019 13 16 2.4123 2.1202 1.4287 14 8 3.4717 3.0207 1.1359 15 8 2.5157 1.0877 2.3994 16 7 1.1165 3.0511 1.8725 17 6 -0.1418 2.4138 2.2686 18 1 -0.0121 1.3318 2.2834 19 6 -1.2377 2.7825 1.2665 20 6 -2.5519 2.1176 1.6805 21 6 -2.9519 2.6030 3.0753 22 1 -3.0813 3.6852 3.0601 23 6 -4.2665 1.9385 3.4891 24 6 -4.6668 2.4244 4.8835 25 6 -3.5714 2.0557 5.8860 26 6 -2.2568 2.7202 5.4722 27 6 -1.8560 2.2344 4.0773 28 1 -1.7266 1.1522 4.0925 29 6 -0.5418 2.8993 3.6633 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.2163 2.0710 -1.8111 36 1 2.4179 3.1471 -1.0586 37 1 3.3866 3.6063 -4.4926 38 1 1.1920 4.0182 1.8741 39 1 -1.3673 3.8647 1.2517 40 1 -0.9526 2.4371 0.2728 41 1 -2.4225 1.0354 1.6958 42 1 -3.3327 2.3806 0.9670 43 1 -4.1376 0.8563 3.5040 44 1 -5.0470 2.2014 2.7750 45 1 -5.6036 1.9513 5.1781 46 1 -4.7959 3.5066 4.8680 47 1 -3.4424 0.9735 5.9015 48 1 -3.8563 2.4023 6.8793 49 1 -1.4763 2.4572 6.1862 50 1 -2.3858 3.8024 5.4568 51 1 0.2389 2.6370 4.3775 52 1 -0.6711 3.9815 3.6481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336920771.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:13 Heat of formation + Delta-G solvation = -119.966285 kcal Electronic energy + Delta-G solvation = -30672.176660 eV Core-core repulsion = 26796.309093 eV Total energy + Delta-G solvation = -3875.867568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.10878 -36.90822 -36.38957 -35.95237 -35.17593 -33.28872 -32.64676 -32.16532 -30.03691 -29.29693 -27.92298 -26.61390 -23.50871 -23.20200 -22.29348 -21.88781 -21.65711 -20.16037 -19.92440 -18.66417 -17.33018 -16.71455 -16.34612 -16.02931 -15.33110 -15.27692 -14.95923 -14.55226 -14.35174 -14.32046 -13.94918 -13.67771 -13.51721 -13.22286 -13.05191 -12.84783 -12.52618 -12.16294 -12.05820 -12.00420 -11.75334 -11.65808 -11.58746 -11.50326 -11.46117 -11.36779 -11.18841 -11.15956 -11.00454 -10.94017 -10.88284 -10.69760 -10.54778 -10.53131 -10.24538 -10.08687 -9.97376 -9.92407 -9.71294 -9.17149 -8.44405 -8.02868 -6.07292 -4.10462 1.26620 3.32015 3.36356 3.39546 3.52332 4.13462 4.38392 4.42809 4.45264 4.53094 4.74627 4.82597 4.98935 5.01703 5.06027 5.11900 5.24143 5.26093 5.27376 5.30608 5.40416 5.40886 5.48883 5.50718 5.54800 5.67650 5.68363 5.75539 5.78686 5.80545 5.85180 5.88586 5.94714 5.97717 6.02840 6.05461 6.10158 6.14208 6.23661 6.30626 6.34371 6.39713 6.47695 6.68184 6.73155 7.19043 7.30279 7.44736 7.66379 7.91509 8.22995 8.91925 9.54056 11.01696 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.003039 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.811111 B = 9211.849878 C = 9693.247266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.117 3.883 3 N -0.989 5.989 4 C 0.257 3.743 5 C -0.529 4.529 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.777 3.223 14 O -0.973 6.973 15 O -0.999 6.999 16 N -1.128 6.128 17 C 0.155 3.845 18 H 0.092 0.908 19 C -0.136 4.136 20 C -0.113 4.113 21 C -0.082 4.082 22 H 0.070 0.930 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.114 4.114 27 C -0.080 4.080 28 H 0.072 0.928 29 C -0.122 4.122 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.024 0.976 36 H 0.045 0.955 37 H 0.264 0.736 38 H 0.411 0.589 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.062 0.938 50 H 0.061 0.939 51 H 0.069 0.931 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.678 -1.504 15.395 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.010 4.010 3 N -0.831 5.831 4 C 0.135 3.865 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 S 2.786 3.214 14 O -0.957 6.957 15 O -0.982 6.982 16 N -0.885 5.885 17 C 0.047 3.953 18 H 0.110 0.890 19 C -0.176 4.176 20 C -0.151 4.151 21 C -0.101 4.101 22 H 0.088 0.912 23 C -0.152 4.152 24 C -0.157 4.157 25 C -0.157 4.157 26 C -0.152 4.152 27 C -0.099 4.099 28 H 0.091 0.909 29 C -0.161 4.161 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.244 0.756 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.080 0.920 51 H 0.087 0.913 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.832 -1.651 15.716 22.369 hybrid contribution 0.355 0.162 -1.009 1.082 sum -15.477 -1.488 14.707 21.403 Atomic orbital electron populations 1.22506 0.97511 1.01596 1.02319 1.21134 0.93071 0.83281 1.03490 1.57684 1.80998 1.21456 1.23006 1.19022 0.96780 0.91800 0.78927 1.21391 1.20098 1.10720 1.04655 0.92004 1.24951 0.96481 0.94703 0.97931 1.69923 1.44160 1.16150 1.23018 0.86572 0.81674 0.79380 0.79895 1.20248 1.21220 1.20051 1.02008 0.73232 0.73115 0.73074 1.93629 1.51755 1.65462 1.84814 1.93516 1.86437 1.58040 1.60245 1.56265 1.28380 1.19742 1.84093 1.20783 0.83412 0.97449 0.93637 0.89044 1.22071 0.94241 1.01406 0.99836 1.21580 0.96923 1.00604 0.96012 1.21205 0.94163 1.00290 0.94424 0.91177 1.21588 0.96895 1.00437 0.96298 1.21530 0.97951 1.00992 0.95197 1.21530 0.95131 1.00694 0.98329 1.21584 0.96965 1.00308 0.96295 1.21155 0.93942 1.00502 0.94316 0.90911 1.21957 0.97000 1.00814 0.96357 0.92610 0.91819 0.92309 0.89445 0.90777 0.95811 0.93701 0.92638 0.75625 0.91463 0.90315 0.91670 0.91639 0.91948 0.92097 0.92346 0.92170 0.92017 0.92319 0.91960 0.92032 0.91255 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 9.47 37.16 0.35 -2.18 16 2 C 0.12 2.05 6.24 -4.04 -0.03 2.02 16 3 N -0.99 -20.22 2.92 -115.66 -0.34 -20.56 16 4 C 0.26 6.32 5.48 -5.19 -0.03 6.29 16 5 C -0.53 -14.57 8.73 -34.44 -0.30 -14.87 16 6 H 0.06 1.68 7.56 -52.49 -0.40 1.28 16 7 C 0.06 1.73 5.45 -17.82 -0.10 1.64 16 8 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 9 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 S 2.78 54.78 6.01 -107.50 -0.65 54.13 16 14 O -0.97 -23.35 17.09 -57.18 -0.98 -24.32 16 15 O -1.00 -20.51 15.95 -57.18 -0.91 -21.42 16 16 N -1.13 -16.76 5.44 -4.89 -0.03 -16.79 16 17 C 0.15 1.93 2.36 -67.93 -0.16 1.77 16 18 H 0.09 1.21 5.37 -51.93 -0.28 0.94 16 19 C -0.14 -1.54 4.67 -26.73 -0.12 -1.66 16 20 C -0.11 -1.05 5.16 -26.73 -0.14 -1.18 16 21 C -0.08 -0.69 1.99 -90.62 -0.18 -0.87 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 23 C -0.11 -0.85 5.20 -26.73 -0.14 -0.99 16 24 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 25 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 26 C -0.11 -0.91 5.21 -26.70 -0.14 -1.05 16 27 C -0.08 -0.72 1.99 -90.60 -0.18 -0.90 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 C -0.12 -1.29 4.81 -26.73 -0.13 -1.42 16 30 H 0.06 0.71 3.17 -51.93 -0.16 0.55 16 31 H 0.06 0.94 8.02 -51.93 -0.42 0.52 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.60 7.38 -51.93 -0.38 1.22 16 34 H 0.07 1.25 6.87 -51.93 -0.36 0.89 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 1.20 7.28 -51.93 -0.38 0.83 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.41 5.43 8.96 -34.47 -0.31 5.13 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.01 6.90 -51.93 -0.36 0.65 16 41 H 0.06 0.60 7.70 -51.93 -0.40 0.20 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 52 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -32.40 397.98 -12.14 -44.54 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -9.34 Total: 2.54 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -1.61 Total: -15.40 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.37 Total: -62.57 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -1.89 Total: -45.75 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 54.78 SS G_CDS: -0.65 Total: 54.13 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.40 -12.14 -44.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336920771.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.428 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds