Wall clock time and date at job start Wed Apr 1 2020 04:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47524 * 2 1 4 4 C 1.46501 * 119.99642 * 275.00155 * 3 2 1 5 5 C 1.50698 * 109.47175 * 293.34991 * 4 3 2 6 6 H 1.08000 * 119.99841 * 4.84523 * 5 4 3 7 7 C 1.37880 * 120.00036 * 184.85302 * 5 4 3 8 8 N 1.31521 * 119.99902 * 5.12642 * 7 5 4 9 9 Si 1.86802 * 119.99831 * 185.13224 * 7 5 4 10 10 H 1.48494 * 109.47097 * 64.99692 * 9 7 5 11 11 H 1.48507 * 109.46725 * 184.99637 * 9 7 5 12 12 H 1.48499 * 109.46865 * 304.99342 * 9 7 5 13 13 S 1.65602 * 120.00216 * 94.99774 * 3 2 1 14 14 O 1.42091 * 106.40256 * 148.04351 * 13 3 2 15 15 O 1.42094 * 106.40259 * 15.11960 * 13 3 2 16 16 N 1.65601 * 107.21490 * 261.58163 * 13 3 2 17 17 C 1.46503 * 119.99864 * 67.76025 * 16 13 3 18 18 H 1.08993 * 109.47179 * 4.32875 * 17 16 13 19 19 C 1.53003 * 109.46834 * 244.32825 * 17 16 13 20 20 C 1.53000 * 109.46988 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47206 * 60.00112 * 20 19 17 22 22 H 1.09001 * 109.46872 * 60.00120 * 21 20 19 23 23 C 1.53000 * 109.47206 * 179.97438 * 21 20 19 24 24 C 1.53002 * 109.47206 * 180.02562 * 23 21 20 25 25 C 1.52997 * 109.46996 * 300.00141 * 24 23 21 26 26 C 1.53000 * 109.47258 * 59.99891 * 25 24 23 27 27 C 1.52997 * 109.46996 * 300.00141 * 21 20 19 28 28 H 1.09001 * 109.47292 * 299.99722 * 27 21 20 29 29 C 1.52995 * 109.47578 * 59.99798 * 27 21 20 30 30 H 1.08995 * 109.47231 * 300.00379 * 1 2 3 31 31 H 1.09001 * 109.46959 * 60.00178 * 1 2 3 32 32 H 1.08993 * 109.47047 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47484 * 239.99561 * 2 1 3 34 34 H 1.09001 * 109.47369 * 120.00171 * 2 1 3 35 35 H 1.09001 * 109.47586 * 53.35553 * 4 3 2 36 36 H 1.09003 * 109.46838 * 173.35080 * 4 3 2 37 37 H 0.96996 * 119.99399 * 179.97438 * 8 7 5 38 38 H 0.97005 * 120.00102 * 247.47647 * 16 13 3 39 39 H 1.09005 * 109.47033 * 300.00336 * 19 17 16 40 40 H 1.08996 * 109.47271 * 60.00253 * 19 17 16 41 41 H 1.09001 * 109.47107 * 300.00375 * 20 19 17 42 42 H 1.08998 * 109.47083 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.47275 * 59.99516 * 23 21 20 44 44 H 1.09002 * 109.47045 * 300.00520 * 23 21 20 45 45 H 1.08998 * 109.46972 * 179.97438 * 24 23 21 46 46 H 1.09001 * 109.46872 * 60.00120 * 24 23 21 47 47 H 1.09005 * 109.46823 * 299.99658 * 25 24 23 48 48 H 1.08996 * 109.47212 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.47083 * 180.02562 * 26 25 24 50 50 H 1.08993 * 109.46988 * 60.00065 * 26 25 24 51 51 H 1.09002 * 109.47365 * 179.97438 * 29 27 21 52 52 H 1.09001 * 109.46871 * 59.99666 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.2456 1.4732 -2.0915 6 1 3.7253 0.5680 -1.7496 7 6 3.6283 2.0475 -3.2852 8 7 3.1171 3.2021 -3.6531 9 14 4.8725 1.1856 -4.3799 10 1 4.2973 -0.0916 -4.8727 11 1 5.2034 2.0580 -5.5353 12 1 6.1060 0.9055 -3.6019 13 16 2.4123 2.1202 1.4287 14 8 3.4717 3.0207 1.1359 15 8 2.5157 1.0877 2.3994 16 7 1.1165 3.0511 1.8725 17 6 -0.1418 2.4138 2.2686 18 1 -0.0121 1.3318 2.2834 19 6 -1.2377 2.7825 1.2665 20 6 -2.5519 2.1176 1.6805 21 6 -2.9519 2.6030 3.0753 22 1 -3.0813 3.6852 3.0601 23 6 -4.2665 1.9385 3.4891 24 6 -4.6668 2.4244 4.8835 25 6 -3.5714 2.0557 5.8860 26 6 -2.2568 2.7202 5.4722 27 6 -1.8560 2.2344 4.0773 28 1 -1.7266 1.1522 4.0925 29 6 -0.5418 2.8993 3.6633 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.2163 2.0710 -1.8111 36 1 2.4179 3.1471 -1.0586 37 1 3.3866 3.6063 -4.4926 38 1 1.1920 4.0182 1.8741 39 1 -1.3673 3.8647 1.2517 40 1 -0.9526 2.4371 0.2728 41 1 -2.4225 1.0354 1.6958 42 1 -3.3327 2.3806 0.9670 43 1 -4.1376 0.8563 3.5040 44 1 -5.0470 2.2014 2.7750 45 1 -5.6036 1.9513 5.1781 46 1 -4.7959 3.5066 4.8680 47 1 -3.4424 0.9735 5.9015 48 1 -3.8563 2.4023 6.8793 49 1 -1.4763 2.4572 6.1862 50 1 -2.3858 3.8024 5.4568 51 1 0.2389 2.6370 4.3775 52 1 -0.6711 3.9815 3.6481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336920771.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:12 Heat of formation + Delta-G solvation = -140.355984 kcal Electronic energy + Delta-G solvation = -30673.060824 eV Core-core repulsion = 26796.309093 eV Total energy + Delta-G solvation = -3876.751731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.87650 -38.39240 -37.78167 -37.32481 -36.90178 -34.68563 -34.18633 -32.92888 -31.53764 -30.13319 -28.76830 -28.52513 -25.01955 -24.22656 -23.30258 -23.09037 -22.54407 -21.06806 -20.59350 -20.12362 -18.91561 -18.51224 -18.12481 -17.43956 -16.84893 -16.19130 -15.99048 -15.80372 -15.43886 -15.27344 -15.07145 -14.68926 -14.63628 -14.53172 -14.28215 -13.89197 -13.74950 -13.63510 -13.48160 -13.36940 -13.20346 -13.06802 -12.84528 -12.75887 -12.72065 -12.65665 -12.48208 -12.29119 -12.23557 -12.06433 -12.00607 -11.90303 -11.72319 -11.69072 -11.60087 -11.40403 -11.18940 -10.82193 -10.67940 -10.58212 -10.24810 -9.75818 -8.20097 -6.31003 -0.32067 1.40579 1.43115 1.50654 2.01755 2.41053 2.60856 3.11446 3.42775 3.64502 3.73309 3.79924 3.93933 4.00856 4.10473 4.21548 4.32316 4.35814 4.41236 4.48129 4.51236 4.56437 4.60001 4.66704 4.70023 4.75204 4.79278 4.80576 4.89725 4.94805 5.03970 5.10437 5.17721 5.19217 5.21116 5.21273 5.26872 5.31809 5.33413 5.39860 5.42441 5.47582 5.48616 5.52006 5.57728 5.60178 5.74671 5.75869 5.88982 6.13576 6.18437 6.78173 7.37477 8.88113 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.003039 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.811111 B = 9211.849878 C = 9693.247266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 N -0.994 5.994 4 C 0.274 3.726 5 C -0.549 4.549 6 H 0.059 0.941 7 C 0.010 3.990 8 N -0.925 5.925 9 Si 0.960 3.040 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.276 1.276 13 S 2.792 3.208 14 O -1.020 7.020 15 O -1.007 7.007 16 N -1.115 6.115 17 C 0.148 3.852 18 H 0.086 0.914 19 C -0.133 4.133 20 C -0.109 4.109 21 C -0.078 4.078 22 H 0.071 0.929 23 C -0.112 4.112 24 C -0.118 4.118 25 C -0.118 4.118 26 C -0.112 4.112 27 C -0.077 4.077 28 H 0.069 0.931 29 C -0.119 4.119 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.020 0.980 36 H 0.018 0.982 37 H 0.267 0.733 38 H 0.420 0.580 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.066 0.934 49 H 0.059 0.941 50 H 0.064 0.936 51 H 0.060 0.940 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.413 -2.322 16.089 24.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.835 5.835 4 C 0.151 3.849 5 C -0.588 4.588 6 H 0.077 0.923 7 C -0.189 4.189 8 N -0.565 5.565 9 Si 0.784 3.216 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.202 1.202 13 S 2.800 3.200 14 O -1.004 7.004 15 O -0.990 6.990 16 N -0.876 5.876 17 C 0.042 3.958 18 H 0.104 0.896 19 C -0.172 4.172 20 C -0.147 4.147 21 C -0.096 4.096 22 H 0.089 0.911 23 C -0.150 4.150 24 C -0.155 4.155 25 C -0.156 4.156 26 C -0.150 4.150 27 C -0.096 4.096 28 H 0.087 0.913 29 C -0.158 4.158 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.255 0.745 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.078 0.922 50 H 0.082 0.918 51 H 0.079 0.921 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.578 -2.492 16.422 24.184 hybrid contribution 0.857 0.419 -1.144 1.489 sum -16.721 -2.073 15.278 22.745 Atomic orbital electron populations 1.22431 0.94620 1.03505 1.02487 1.21357 0.95549 0.81585 1.03252 1.57567 1.81558 1.22640 1.21756 1.18554 0.95687 0.90569 0.80131 1.21776 1.20808 1.10826 1.05415 0.92276 1.25789 0.98440 0.95341 0.99336 1.70029 1.45521 1.17362 1.23554 0.85589 0.79089 0.78850 0.78040 1.18704 1.20589 1.20170 1.01332 0.73242 0.72657 0.72724 1.93559 1.54783 1.66660 1.85430 1.93498 1.86848 1.58550 1.60145 1.55874 1.28292 1.19921 1.83496 1.21060 0.82386 0.97051 0.95314 0.89645 1.22032 0.94821 1.01920 0.98471 1.21568 0.95810 1.00537 0.96810 1.21165 0.94482 1.00439 0.93554 0.91059 1.21566 0.96306 1.00306 0.96808 1.21524 0.98173 1.01133 0.94697 1.21524 0.94656 1.00536 0.98842 1.21566 0.97460 1.00535 0.95439 1.21136 0.93157 1.00100 0.95225 0.91283 1.21941 0.97713 1.01566 0.94597 0.91414 0.92698 0.89487 0.90608 0.90058 0.96179 0.96445 0.92446 0.74496 0.90999 0.92020 0.91424 0.90734 0.91961 0.91499 0.91514 0.92056 0.92138 0.91559 0.92180 0.91766 0.92103 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.60 9.47 71.98 0.68 -3.92 16 2 C 0.11 3.76 6.24 86.38 0.54 4.30 16 3 N -0.99 -41.32 2.92 -519.84 -1.52 -42.84 16 4 C 0.27 13.88 5.48 85.63 0.47 14.35 16 5 C -0.55 -30.77 8.73 25.60 0.22 -30.54 16 6 H 0.06 3.26 7.56 -2.91 -0.02 3.24 16 7 C 0.01 0.59 5.45 84.65 0.46 1.05 16 8 N -0.93 -54.54 13.29 21.45 0.28 -54.26 16 9 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 13 S 2.79 111.96 6.01 -56.49 -0.34 111.62 16 14 O -1.02 -50.59 17.09 -128.00 -2.19 -52.77 16 15 O -1.01 -41.31 15.95 -128.00 -2.04 -43.35 16 16 N -1.11 -33.11 5.44 -169.38 -0.92 -34.03 16 17 C 0.15 3.56 2.36 44.99 0.11 3.67 16 18 H 0.09 2.18 5.37 -2.39 -0.01 2.16 16 19 C -0.13 -2.85 4.67 30.60 0.14 -2.70 16 20 C -0.11 -1.80 5.16 30.60 0.16 -1.64 16 21 C -0.08 -1.13 1.99 -10.79 -0.02 -1.15 16 22 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 23 C -0.11 -1.38 5.20 30.60 0.16 -1.22 16 24 C -0.12 -1.32 5.92 30.59 0.18 -1.14 16 25 C -0.12 -1.41 5.92 30.59 0.18 -1.23 16 26 C -0.11 -1.57 5.21 30.61 0.16 -1.41 16 27 C -0.08 -1.24 1.99 -10.78 -0.02 -1.26 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 C -0.12 -2.35 4.81 30.59 0.15 -2.21 16 30 H 0.07 1.64 3.17 -2.39 -0.01 1.63 16 31 H 0.05 1.57 8.02 -2.39 -0.02 1.56 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 2.79 7.38 -2.39 -0.02 2.77 16 34 H 0.08 2.69 6.87 -2.39 -0.02 2.68 16 35 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.02 0.98 7.28 -2.39 -0.02 0.96 16 37 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 38 H 0.42 11.13 8.96 -96.74 -0.87 10.26 16 39 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.06 1.55 6.90 -2.39 -0.02 1.53 16 41 H 0.07 1.09 7.70 -2.39 -0.02 1.08 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 50 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 52 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -69.82 397.98 -1.11 -70.93 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.02 Total: 23.50 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 3.57 Total: -25.06 kcal Atomic # 7 Polarization: -128.97 SS G_CDS: -2.16 Total: -131.13 kcal Atomic # 8 Polarization: -91.90 SS G_CDS: -4.23 Total: -96.13 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 111.96 SS G_CDS: -0.34 Total: 111.62 kcal Total: -69.82 -1.11 -70.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336920771.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.430 kcal (2) G-P(sol) polarization free energy of solvation -69.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds