Wall clock time and date at job start Wed Apr 1 2020 03:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47049 * 2 1 4 4 N 1.46500 * 109.47249 * 240.00278 * 2 1 3 5 5 C 1.34783 * 120.00140 * 84.99313 * 4 2 1 6 6 O 1.21280 * 119.99587 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99895 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.46834 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47003 * 304.99690 * 8 7 5 10 10 C 1.50693 * 109.47357 * 65.00145 * 8 7 5 11 11 H 1.07997 * 120.00236 * 25.68470 * 10 8 7 12 12 C 1.37878 * 119.99939 * 205.69262 * 10 8 7 13 13 N 1.31510 * 120.00232 * 5.32516 * 12 10 8 14 14 Si 1.86806 * 120.00029 * 185.33567 * 12 10 8 15 15 H 1.48505 * 109.46761 * 359.97438 * 14 12 10 16 16 H 1.48489 * 109.47327 * 119.99631 * 14 12 10 17 17 H 1.48499 * 109.46806 * 239.99815 * 14 12 10 18 18 C 1.50699 * 109.46937 * 185.00032 * 8 7 5 19 19 C 1.38234 * 120.00280 * 303.47470 * 18 8 7 20 20 C 1.38231 * 120.00322 * 179.79201 * 19 18 8 21 21 C 1.38235 * 119.99932 * 0.43263 * 20 19 18 22 22 C 1.38230 * 120.00189 * 359.82240 * 21 20 19 23 23 C 1.38242 * 120.00005 * 123.74537 * 18 8 7 24 24 C 1.50698 * 109.47482 * 119.99927 * 2 1 3 25 25 O 1.21283 * 119.99540 * 92.79017 * 24 2 1 26 26 N 1.34775 * 120.00091 * 272.51720 * 24 2 1 27 27 C 1.47016 * 125.64663 * 4.64371 * 26 24 2 28 28 C 1.54315 * 107.27579 * 180.97076 * 27 26 24 29 29 C 1.55155 * 102.86202 * 22.52750 * 28 27 26 30 30 C 1.47424 * 125.64619 * 184.95950 * 26 24 2 31 31 H 1.08998 * 109.47147 * 304.89461 * 1 2 3 32 32 H 1.08998 * 109.47507 * 64.89679 * 1 2 3 33 33 H 1.09000 * 109.46853 * 184.89431 * 1 2 3 34 34 H 0.97003 * 120.00095 * 265.00365 * 4 2 1 35 35 H 1.09001 * 109.47183 * 300.00283 * 7 5 4 36 36 H 1.08994 * 109.47171 * 60.00314 * 7 5 4 37 37 H 0.96997 * 120.00103 * 180.02562 * 13 12 10 38 38 H 1.07999 * 119.99808 * 359.97438 * 19 18 8 39 39 H 1.08007 * 119.99915 * 180.27405 * 20 19 18 40 40 H 1.08000 * 119.99909 * 179.83413 * 21 20 19 41 41 H 1.08000 * 120.00500 * 180.02562 * 22 21 20 42 42 H 1.07993 * 119.99673 * 359.97438 * 23 18 8 43 43 H 1.08996 * 109.88907 * 300.51741 * 27 26 24 44 44 H 1.09002 * 109.88504 * 61.68515 * 27 26 24 45 45 H 1.09001 * 110.92810 * 264.11270 * 28 27 26 46 46 H 1.09004 * 110.59150 * 140.78552 * 28 27 26 47 47 H 1.09006 * 111.00638 * 206.22781 * 29 28 27 48 48 H 1.09000 * 111.00825 * 82.37709 * 29 28 27 49 49 H 1.09001 * 110.36096 * 274.66729 * 30 26 24 50 50 H 1.08993 * 110.36788 * 36.87956 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8588 1.1587 -2.4115 7 6 2.6488 -0.7287 -3.5878 8 6 2.7008 0.2546 -4.7588 9 1 1.7212 0.7140 -4.8913 10 6 3.7227 1.3243 -4.4716 11 1 4.5468 1.1187 -3.8046 12 6 3.6054 2.5656 -5.0602 13 7 2.5479 2.8510 -5.7881 14 14 4.9487 3.8421 -4.8239 15 1 6.0231 3.2773 -3.9684 16 1 5.5131 4.2171 -6.1452 17 1 4.3773 5.0466 -4.1697 18 6 3.0845 -0.4818 -6.0164 19 6 4.2602 -1.2074 -6.0612 20 6 4.6100 -1.8864 -7.2133 21 6 3.7884 -1.8325 -8.3237 22 6 2.6153 -1.1026 -8.2809 23 6 2.2634 -0.4270 -7.1272 24 6 2.0324 -0.7104 1.2304 25 8 2.2828 -1.8962 1.1862 26 7 2.2087 -0.0267 2.3785 27 6 1.8613 1.3850 2.5970 28 6 2.2627 1.7368 4.0449 29 6 3.3376 0.6677 4.3748 30 6 2.7880 -0.5690 3.6210 31 1 -0.3633 0.5879 0.8429 32 1 -0.3634 0.4360 -0.9306 33 1 -0.3633 -1.0239 0.0877 34 1 2.2490 -1.6317 -1.1527 35 1 3.6479 -1.1212 -3.3987 36 1 1.9759 -1.5505 -3.8326 37 1 2.4656 3.7241 -6.2024 38 1 4.9040 -1.2462 -5.1949 39 1 5.5264 -2.4570 -7.2467 40 1 4.0631 -2.3608 -9.2248 41 1 1.9733 -1.0608 -9.1483 42 1 1.3468 0.1431 -7.0936 43 1 2.4084 2.0144 1.8953 44 1 0.7884 1.5271 2.4670 45 1 1.4102 1.6470 4.7181 46 1 2.6886 2.7391 4.0918 47 1 3.3869 0.4812 5.4477 48 1 4.3127 0.9609 3.9857 49 1 2.0186 -1.0636 4.2138 50 1 3.5948 -1.2649 3.3913 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337068118.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:07 Heat of formation + Delta-G solvation = -71.326022 kcal Electronic energy + Delta-G solvation = -30202.369284 eV Core-core repulsion = 26193.166965 eV Total energy + Delta-G solvation = -4009.202319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.58033 -40.48713 -39.67847 -38.48513 -36.21300 -35.54806 -33.50603 -32.99223 -31.64846 -31.47644 -30.14491 -29.81379 -27.50807 -26.10977 -24.65900 -23.62270 -23.09233 -22.13532 -21.58430 -20.96844 -20.37776 -18.77598 -18.42136 -17.75429 -17.60269 -17.23542 -16.90211 -16.46429 -16.17666 -15.77338 -15.71786 -15.45858 -15.29412 -14.74788 -14.54043 -14.34390 -14.27380 -14.00018 -13.91830 -13.85913 -13.60920 -13.51203 -13.32499 -13.21398 -13.11084 -12.86324 -12.72383 -12.51540 -12.41180 -12.20604 -12.16119 -11.84706 -11.68426 -11.61082 -11.28329 -11.07084 -11.00935 -10.61881 -10.41015 -10.09069 -9.78236 -9.53196 -9.19209 -8.02189 -6.04999 0.78904 0.85029 1.29342 1.36689 1.38047 1.47105 1.69863 1.92433 2.42076 2.46805 3.19329 3.24367 3.36577 3.63382 3.77140 3.94800 3.99133 4.08201 4.18667 4.24941 4.26958 4.36289 4.42312 4.44940 4.55159 4.56249 4.62291 4.63291 4.70492 4.75695 4.82265 4.91753 4.93421 4.95990 4.99976 5.08263 5.10900 5.18429 5.22953 5.34177 5.39552 5.47624 5.52124 5.67656 5.80468 5.84570 5.96609 6.20732 6.28622 6.41140 6.47050 6.65556 6.88597 7.00912 7.49324 7.56735 9.06886 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.002885 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.855445 B = 9701.689412 C =10876.277814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.130 3.870 3 H 0.095 0.905 4 N -0.722 5.722 5 C 0.519 3.481 6 O -0.545 6.545 7 C -0.117 4.117 8 C 0.086 3.914 9 H 0.024 0.976 10 C -0.484 4.484 11 H 0.043 0.957 12 C 0.023 3.977 13 N -0.913 5.913 14 Si 0.934 3.066 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.288 1.288 18 C -0.046 4.046 19 C -0.131 4.131 20 C -0.127 4.127 21 C -0.148 4.148 22 C -0.130 4.130 23 C -0.138 4.138 24 C 0.531 3.469 25 O -0.569 6.569 26 N -0.616 5.616 27 C 0.082 3.918 28 C -0.122 4.122 29 C -0.126 4.126 30 C 0.097 3.903 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.410 0.590 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.254 0.746 38 H 0.116 0.884 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.130 0.870 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.110 0.890 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 -7.298 16.902 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.021 3.979 3 H 0.112 0.888 4 N -0.379 5.379 5 C 0.306 3.694 6 O -0.420 6.420 7 C -0.157 4.157 8 C 0.067 3.933 9 H 0.043 0.957 10 C -0.522 4.522 11 H 0.062 0.938 12 C -0.176 4.176 13 N -0.553 5.553 14 Si 0.761 3.239 15 H -0.192 1.192 16 H -0.209 1.209 17 H -0.214 1.214 18 C -0.047 4.047 19 C -0.149 4.149 20 C -0.145 4.145 21 C -0.165 4.165 22 C -0.148 4.148 23 C -0.156 4.156 24 C 0.319 3.681 25 O -0.448 6.448 26 N -0.349 5.349 27 C -0.040 4.040 28 C -0.160 4.160 29 C -0.164 4.164 30 C -0.025 4.025 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.247 0.753 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.063 0.937 38 H 0.134 0.866 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.148 0.852 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.129 0.871 48 H 0.090 0.910 49 H 0.098 0.902 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.279 -6.942 16.682 18.115 hybrid contribution 0.585 0.809 -0.195 1.017 sum -0.693 -6.133 16.488 17.605 Atomic orbital electron populations 1.22000 0.91610 1.03279 1.03616 1.20693 0.96768 0.97217 0.83197 0.88755 1.45906 1.69052 1.14622 1.08284 1.20995 0.76599 0.87086 0.84687 1.90733 1.49055 1.17229 1.84974 1.21689 1.02274 0.98939 0.92835 1.17575 0.97242 0.90980 0.87518 0.95738 1.20973 1.09057 0.96491 1.25642 0.93839 1.25474 0.96780 0.99768 0.95593 1.70054 1.28417 1.21869 1.34912 0.85873 0.80485 0.79915 0.77594 1.19233 1.20854 1.21444 1.20552 0.94109 0.92891 0.97136 1.21057 0.96395 0.98457 0.99001 1.21361 1.00195 0.99871 0.93041 1.21255 0.95008 1.01076 0.99211 1.21289 0.98102 0.97986 0.97417 1.21078 1.00106 1.00009 0.94408 1.20311 0.77187 0.86523 0.84050 1.90661 1.53132 1.16248 1.84806 1.48575 1.61423 1.13386 1.11558 1.22449 1.01732 0.80279 0.99579 1.22663 0.99781 1.00273 0.93289 1.22807 0.98654 0.93211 1.01753 1.22459 0.98031 0.97783 0.84189 0.89057 0.92302 0.91436 0.75284 0.88801 0.88997 0.93726 0.86559 0.84129 0.83902 0.85168 0.88889 0.91612 0.89657 0.88589 0.88421 0.87139 0.91011 0.90238 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.47 71.98 0.68 -3.02 16 2 C 0.13 3.83 2.48 44.24 0.11 3.94 16 3 H 0.09 3.01 6.61 -2.39 -0.02 3.00 16 4 N -0.72 -24.09 5.06 -446.09 -2.26 -26.35 16 5 C 0.52 21.57 7.54 87.66 0.66 22.23 16 6 O -0.54 -27.78 14.65 -3.03 -0.04 -27.83 16 7 C -0.12 -4.74 4.85 29.85 0.14 -4.59 16 8 C 0.09 4.30 1.62 -12.29 -0.02 4.28 16 9 H 0.02 1.43 7.07 -2.39 -0.02 1.41 16 10 C -0.48 -26.88 6.59 25.60 0.17 -26.71 16 11 H 0.04 2.42 7.82 -2.91 -0.02 2.39 16 12 C 0.02 1.31 5.45 84.66 0.46 1.77 16 13 N -0.91 -55.61 12.91 21.45 0.28 -55.33 16 14 Si 0.93 46.35 29.54 68.60 2.03 48.38 16 15 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 17 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 18 C -0.05 -2.11 4.77 -19.86 -0.09 -2.21 16 19 C -0.13 -5.21 8.92 22.27 0.20 -5.01 16 20 C -0.13 -4.22 10.05 22.27 0.22 -4.00 16 21 C -0.15 -4.73 10.05 22.27 0.22 -4.51 16 22 C -0.13 -4.72 10.05 22.27 0.22 -4.50 16 23 C -0.14 -6.10 9.67 22.27 0.22 -5.89 16 24 C 0.53 14.81 7.04 87.66 0.62 15.43 16 25 O -0.57 -18.91 16.34 -3.04 -0.05 -18.96 16 26 N -0.62 -13.12 3.33 -811.84 -2.70 -15.82 16 27 C 0.08 1.27 6.28 86.73 0.54 1.81 16 28 C -0.12 -1.12 6.95 31.78 0.22 -0.90 16 29 C -0.13 -1.29 7.08 31.99 0.23 -1.06 16 30 C 0.10 1.61 6.89 86.86 0.60 2.21 16 31 H 0.09 1.76 7.39 -2.39 -0.02 1.74 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.41 12.46 7.81 -92.71 -0.72 11.74 16 35 H 0.09 3.47 7.39 -2.39 -0.02 3.46 16 36 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 38 H 0.12 4.41 7.44 -2.91 -0.02 4.39 16 39 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 41 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 42 H 0.09 4.43 7.95 -2.91 -0.02 4.40 16 43 H 0.07 1.17 7.67 -2.39 -0.02 1.15 16 44 H 0.09 1.13 7.39 -2.39 -0.02 1.11 16 45 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 48 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.06 1.24 8.08 -2.39 -0.02 1.23 16 Total: -1.00 -76.65 409.14 2.87 -73.78 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.21 Total: 32.86 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 5.41 Total: -10.73 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -4.68 Total: -97.50 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -0.09 Total: -46.79 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -76.65 2.87 -73.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337068118.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.458 kcal (2) G-P(sol) polarization free energy of solvation -76.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds