Wall clock time and date at job start Wed Apr 1 2020 03:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47198 * 2 1 4 4 N 1.46502 * 109.46738 * 119.99981 * 2 1 3 5 5 C 1.34777 * 119.99872 * 274.99882 * 4 2 1 6 6 O 1.21280 * 120.00169 * 0.02562 * 5 4 2 7 7 C 1.50705 * 120.00121 * 179.72769 * 5 4 2 8 8 C 1.52995 * 109.47338 * 180.27516 * 7 5 4 9 9 C 1.50696 * 109.47152 * 179.97438 * 8 7 5 10 10 C 1.38239 * 119.99977 * 269.72674 * 9 8 7 11 11 C 1.38233 * 120.00117 * 179.76668 * 10 9 8 12 12 C 1.38239 * 119.99645 * 0.50505 * 11 10 9 13 13 C 1.38231 * 119.99864 * 359.75141 * 12 11 10 14 14 C 1.38231 * 120.00004 * 90.00111 * 9 8 7 15 15 C 1.50696 * 109.47270 * 239.99694 * 2 1 3 16 16 O 1.21277 * 120.00385 * 266.61730 * 15 2 1 17 17 N 1.34780 * 119.99924 * 86.61871 * 15 2 1 18 18 C 1.46499 * 120.00137 * 185.03920 * 17 15 2 19 19 C 1.53001 * 109.46869 * 177.67365 * 18 17 15 20 20 C 1.50691 * 115.55202 * 64.46594 * 19 18 17 21 21 H 1.08008 * 119.99649 * 266.46012 * 20 19 18 22 22 C 1.37877 * 120.00538 * 86.45696 * 20 19 18 23 23 N 1.31513 * 120.00086 * 183.15951 * 22 20 19 24 24 Si 1.86801 * 119.99834 * 3.16451 * 22 20 19 25 25 H 1.48497 * 109.47116 * 84.88092 * 24 22 20 26 26 H 1.48500 * 109.47120 * 204.88129 * 24 22 20 27 27 H 1.48504 * 109.46748 * 324.87946 * 24 22 20 28 28 C 1.52999 * 117.49985 * 278.78755 * 19 18 17 29 29 C 1.53005 * 117.49513 * 210.12956 * 19 18 17 30 30 H 1.09000 * 109.46919 * 58.42107 * 1 2 3 31 31 H 1.09002 * 109.47159 * 178.41618 * 1 2 3 32 32 H 1.08999 * 109.47413 * 298.41816 * 1 2 3 33 33 H 0.96999 * 120.00432 * 95.00627 * 4 2 1 34 34 H 1.08996 * 109.46881 * 300.27759 * 7 5 4 35 35 H 1.09000 * 109.46812 * 60.26994 * 7 5 4 36 36 H 1.08996 * 109.47333 * 299.99966 * 8 7 5 37 37 H 1.09002 * 109.46875 * 60.00135 * 8 7 5 38 38 H 1.08002 * 119.99800 * 359.97438 * 10 9 8 39 39 H 1.07997 * 120.00259 * 180.23439 * 11 10 9 40 40 H 1.07999 * 119.99563 * 179.72154 * 12 11 10 41 41 H 1.08007 * 119.99496 * 179.97438 * 13 12 11 42 42 H 1.08001 * 120.00459 * 0.02562 * 14 9 8 43 43 H 0.97005 * 120.00133 * 5.04667 * 17 15 2 44 44 H 1.09000 * 109.47132 * 297.67333 * 18 17 15 45 45 H 1.09003 * 109.47164 * 57.67408 * 18 17 15 46 46 H 0.97001 * 119.99960 * 179.97438 * 23 22 20 47 47 H 1.09006 * 117.49716 * 0.02562 * 28 19 18 48 48 H 1.08993 * 117.49906 * 145.02097 * 28 19 18 49 49 H 1.08994 * 117.49670 * 214.97899 * 29 19 18 50 50 H 1.09000 * 117.49956 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8581 1.1584 2.4117 7 6 2.6433 -0.7301 3.5892 8 6 2.6895 0.2516 4.7617 9 6 3.1853 -0.4604 5.9939 10 6 2.2862 -1.0709 6.8482 11 6 2.7414 -1.7282 7.9759 12 6 4.0948 -1.7660 8.2548 13 6 4.9934 -1.1509 7.4033 14 6 4.5387 -0.4981 6.2728 15 6 2.0323 -0.7104 -1.2304 16 8 2.2929 -1.8940 -1.1834 17 7 2.1921 -0.0306 -2.3831 18 6 2.5740 -0.7413 -3.6059 19 6 2.6307 0.2462 -4.7731 20 6 3.6830 1.3195 -4.6659 21 1 3.4333 2.2798 -4.2392 22 6 4.9645 1.0758 -5.1124 23 7 5.8981 1.9898 -4.9624 24 14 5.3745 -0.5526 -5.9307 25 1 5.0351 -0.4804 -7.3745 26 1 6.8247 -0.8328 -5.7765 27 1 4.5898 -1.6392 -5.2913 28 6 1.3094 0.6173 -5.4494 29 6 2.3094 -0.2911 -6.1692 30 1 -0.3633 0.5382 -0.8755 31 1 -0.3633 -1.0273 -0.0284 32 1 -0.3634 0.4891 0.9038 33 1 2.2490 -1.6318 1.1527 34 1 1.9695 -1.5523 3.8301 35 1 3.6433 -1.1224 3.4041 36 1 3.3634 1.0738 4.5209 37 1 1.6895 0.6438 4.9468 38 1 1.2284 -1.0373 6.6328 39 1 2.0393 -2.2085 8.6413 40 1 4.4500 -2.2757 9.1382 41 1 6.0508 -1.1801 7.6215 42 1 5.2407 -0.0170 5.6080 43 1 2.0543 0.9294 -2.4031 44 1 3.5538 -1.1989 -3.4691 45 1 1.8379 -1.5160 -3.8208 46 1 6.7998 1.8182 -5.2762 47 1 0.3996 0.1582 -5.0625 48 1 1.2014 1.6377 -5.8170 49 1 2.8588 0.1321 -7.0101 50 1 2.0580 -1.3481 -6.2561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337767238.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:04 Heat of formation + Delta-G solvation = -39.328307 kcal Electronic energy + Delta-G solvation = -28862.575061 eV Core-core repulsion = 24854.760267 eV Total energy + Delta-G solvation = -4007.814794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.34910 -39.58511 -38.93530 -37.18697 -35.01083 -34.21809 -33.64456 -32.18711 -31.19240 -31.17166 -29.54092 -26.98214 -25.56381 -25.16053 -23.42944 -22.85629 -21.81620 -21.28170 -20.31964 -20.01213 -19.28063 -17.81467 -17.13636 -16.73243 -16.18405 -15.98513 -15.96493 -15.28200 -15.27623 -15.06133 -14.87884 -14.64597 -14.07731 -13.76652 -13.72008 -13.43907 -13.36459 -13.10514 -12.94326 -12.93071 -12.66650 -12.42527 -12.33963 -12.11061 -12.02447 -11.65825 -11.53146 -11.28115 -11.22513 -11.08522 -10.88239 -10.53943 -10.26420 -9.99140 -9.81359 -9.59103 -9.26408 -9.21043 -9.16017 -8.97995 -8.76288 -8.60231 -8.43797 -6.20718 -4.26076 1.05092 1.11272 2.52893 2.75655 3.03778 3.24298 3.34627 3.37833 3.49750 3.67631 4.34650 4.40556 4.55436 4.70156 4.71984 4.75121 4.84774 4.88135 4.94805 5.04865 5.10066 5.10692 5.15879 5.24294 5.24922 5.34837 5.57201 5.58833 5.59882 5.69328 5.74258 5.79775 5.92817 5.94005 5.99226 6.04536 6.13916 6.17993 6.22926 6.30100 6.35938 6.36930 6.42573 6.63688 6.72121 6.88980 6.96764 7.01698 7.43257 7.61508 7.95617 8.14699 8.35209 8.52658 8.79375 9.41879 10.90404 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016175 B = 0.001951 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.689686 B =14349.279870 C =15193.998821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.109 0.891 4 N -0.713 5.713 5 C 0.515 3.485 6 O -0.541 6.541 7 C -0.133 4.133 8 C -0.066 4.066 9 C -0.081 4.081 10 C -0.117 4.117 11 C -0.120 4.120 12 C -0.127 4.127 13 C -0.119 4.119 14 C -0.116 4.116 15 C 0.505 3.495 16 O -0.555 6.555 17 N -0.693 5.693 18 C 0.156 3.844 19 C -0.018 4.018 20 C -0.493 4.493 21 H 0.079 0.921 22 C 0.080 3.920 23 N -0.892 5.892 24 Si 0.881 3.119 25 H -0.276 1.276 26 H -0.295 1.295 27 H -0.260 1.260 28 C -0.177 4.177 29 C -0.194 4.194 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.410 0.590 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.408 0.592 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.266 0.734 47 H 0.073 0.927 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.139 -7.264 21.236 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.016 3.984 3 H 0.127 0.873 4 N -0.367 5.367 5 C 0.302 3.698 6 O -0.418 6.418 7 C -0.173 4.173 8 C -0.103 4.103 9 C -0.081 4.081 10 C -0.135 4.135 11 C -0.138 4.138 12 C -0.145 4.145 13 C -0.137 4.137 14 C -0.134 4.134 15 C 0.289 3.711 16 O -0.435 6.435 17 N -0.342 5.342 18 C 0.032 3.968 19 C -0.019 4.019 20 C -0.530 4.530 21 H 0.097 0.903 22 C -0.124 4.124 23 N -0.529 5.529 24 Si 0.709 3.291 25 H -0.202 1.202 26 H -0.222 1.222 27 H -0.184 1.184 28 C -0.214 4.214 29 C -0.232 4.232 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.246 0.754 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.243 0.757 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.107 0.893 49 H 0.110 0.890 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.960 -7.203 21.228 23.788 hybrid contribution 0.528 -0.900 -0.662 1.236 sum -7.432 -8.103 20.565 23.320 Atomic orbital electron populations 1.22044 0.92764 1.02940 1.03460 1.20778 0.95735 0.98138 0.83734 0.87279 1.45839 1.67340 1.14857 1.08680 1.20684 0.77325 0.87333 0.84457 1.90713 1.49994 1.15923 1.85123 1.21637 1.03680 0.99639 0.92375 1.20345 1.03146 0.96828 0.90008 1.19940 0.93552 0.98176 0.96433 1.21096 0.99555 0.98051 0.94780 1.21152 0.95757 0.99446 0.97433 1.21158 0.93523 1.00085 0.99704 1.21174 0.99710 0.97896 0.94889 1.21138 0.95171 0.99563 0.97498 1.20444 0.78288 0.87568 0.84811 1.90648 1.52040 1.15907 1.84870 1.45849 1.67498 1.12293 1.08524 1.21180 0.99116 0.93318 0.83140 1.19629 0.96113 0.97259 0.88876 1.20173 0.92197 0.98376 1.42257 0.90290 1.24987 0.95989 0.96510 0.94885 1.69885 1.02637 1.34401 1.45953 0.86846 0.76966 0.84933 0.80319 1.20228 1.22158 1.18447 1.22848 0.92884 0.99698 1.06001 1.22977 1.04864 0.97584 0.97788 0.90782 0.91868 0.91032 0.75360 0.88651 0.88536 0.89934 0.90065 0.86024 0.86166 0.86268 0.86090 0.85877 0.75690 0.91655 0.93543 0.92398 0.90856 0.89316 0.89045 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.47 37.16 0.35 -1.40 16 2 C 0.12 1.69 2.97 -69.08 -0.21 1.49 16 3 H 0.11 1.55 7.58 -51.93 -0.39 1.16 16 4 N -0.71 -8.82 5.05 -54.93 -0.28 -9.10 16 5 C 0.52 6.27 7.79 -10.98 -0.09 6.18 16 6 O -0.54 -8.30 15.64 5.56 0.09 -8.21 16 7 C -0.13 -1.17 5.68 -27.88 -0.16 -1.33 16 8 C -0.07 -0.59 4.63 -27.89 -0.13 -0.72 16 9 C -0.08 -0.70 5.13 -104.63 -0.54 -1.24 16 10 C -0.12 -0.93 9.70 -39.58 -0.38 -1.32 16 11 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 12 C -0.13 -0.94 10.05 -39.58 -0.40 -1.33 16 13 C -0.12 -0.93 10.05 -39.59 -0.40 -1.32 16 14 C -0.12 -0.98 9.70 -39.59 -0.38 -1.37 16 15 C 0.50 8.42 7.02 -10.99 -0.08 8.34 16 16 O -0.56 -10.67 16.04 5.56 0.09 -10.59 16 17 N -0.69 -12.24 5.47 -60.29 -0.33 -12.57 16 18 C 0.16 3.14 5.22 -4.04 -0.02 3.12 16 19 C -0.02 -0.37 0.87 -155.66 -0.14 -0.51 16 20 C -0.49 -12.66 9.19 -34.44 -0.32 -12.98 16 21 H 0.08 2.19 8.06 -52.48 -0.42 1.77 16 22 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 23 N -0.89 -26.11 13.96 55.43 0.77 -25.34 16 24 Si 0.88 21.11 24.70 -169.99 -4.20 16.91 16 25 H -0.28 -6.45 7.02 56.52 0.40 -6.05 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.26 -5.98 6.08 56.52 0.34 -5.64 16 28 C -0.18 -3.26 9.96 -26.69 -0.27 -3.52 16 29 C -0.19 -3.86 7.56 -26.69 -0.20 -4.06 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.41 4.75 7.80 -40.82 -0.32 4.44 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 37 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 41 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.41 6.80 8.34 -40.82 -0.34 6.46 16 44 H 0.07 1.48 6.93 -51.93 -0.36 1.12 16 45 H 0.05 0.89 8.10 -51.93 -0.42 0.47 16 46 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 48 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 49 H 0.09 1.92 6.99 -51.93 -0.36 1.56 16 50 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 415.19 15.07 6.26 6.26 Total: -1.00 -31.78 415.19 -9.59 -41.37 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -8.15 Total: 12.45 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -3.84 Total: -11.18 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.17 Total: -47.01 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.18 Total: -18.79 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.20 Total: 16.91 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.78 -9.59 -41.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337767238.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.037 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds