Wall clock time and date at job start Wed Apr 1 2020 03:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47198 * 2 1 4 4 N 1.46502 * 109.46738 * 119.99981 * 2 1 3 5 5 C 1.34777 * 119.99872 * 274.99882 * 4 2 1 6 6 O 1.21280 * 120.00169 * 0.02562 * 5 4 2 7 7 C 1.50705 * 120.00121 * 179.72769 * 5 4 2 8 8 C 1.52995 * 109.47338 * 180.27516 * 7 5 4 9 9 C 1.50696 * 109.47152 * 179.97438 * 8 7 5 10 10 C 1.38239 * 119.99977 * 269.72674 * 9 8 7 11 11 C 1.38233 * 120.00117 * 179.76668 * 10 9 8 12 12 C 1.38239 * 119.99645 * 0.50505 * 11 10 9 13 13 C 1.38231 * 119.99864 * 359.75141 * 12 11 10 14 14 C 1.38231 * 120.00004 * 90.00111 * 9 8 7 15 15 C 1.50696 * 109.47270 * 239.99694 * 2 1 3 16 16 O 1.21277 * 120.00385 * 266.61730 * 15 2 1 17 17 N 1.34780 * 119.99924 * 86.61871 * 15 2 1 18 18 C 1.46499 * 120.00137 * 185.03920 * 17 15 2 19 19 C 1.53001 * 109.46869 * 177.67365 * 18 17 15 20 20 C 1.50691 * 115.55202 * 64.46594 * 19 18 17 21 21 H 1.08008 * 119.99649 * 266.46012 * 20 19 18 22 22 C 1.37877 * 120.00538 * 86.45696 * 20 19 18 23 23 N 1.31513 * 120.00086 * 183.15951 * 22 20 19 24 24 Si 1.86801 * 119.99834 * 3.16451 * 22 20 19 25 25 H 1.48497 * 109.47116 * 84.88092 * 24 22 20 26 26 H 1.48500 * 109.47120 * 204.88129 * 24 22 20 27 27 H 1.48504 * 109.46748 * 324.87946 * 24 22 20 28 28 C 1.52999 * 117.49985 * 278.78755 * 19 18 17 29 29 C 1.53005 * 117.49513 * 210.12956 * 19 18 17 30 30 H 1.09000 * 109.46919 * 58.42107 * 1 2 3 31 31 H 1.09002 * 109.47159 * 178.41618 * 1 2 3 32 32 H 1.08999 * 109.47413 * 298.41816 * 1 2 3 33 33 H 0.96999 * 120.00432 * 95.00627 * 4 2 1 34 34 H 1.08996 * 109.46881 * 300.27759 * 7 5 4 35 35 H 1.09000 * 109.46812 * 60.26994 * 7 5 4 36 36 H 1.08996 * 109.47333 * 299.99966 * 8 7 5 37 37 H 1.09002 * 109.46875 * 60.00135 * 8 7 5 38 38 H 1.08002 * 119.99800 * 359.97438 * 10 9 8 39 39 H 1.07997 * 120.00259 * 180.23439 * 11 10 9 40 40 H 1.07999 * 119.99563 * 179.72154 * 12 11 10 41 41 H 1.08007 * 119.99496 * 179.97438 * 13 12 11 42 42 H 1.08001 * 120.00459 * 0.02562 * 14 9 8 43 43 H 0.97005 * 120.00133 * 5.04667 * 17 15 2 44 44 H 1.09000 * 109.47132 * 297.67333 * 18 17 15 45 45 H 1.09003 * 109.47164 * 57.67408 * 18 17 15 46 46 H 0.97001 * 119.99960 * 179.97438 * 23 22 20 47 47 H 1.09006 * 117.49716 * 0.02562 * 28 19 18 48 48 H 1.08993 * 117.49906 * 145.02097 * 28 19 18 49 49 H 1.08994 * 117.49670 * 214.97899 * 29 19 18 50 50 H 1.09000 * 117.49956 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8581 1.1584 2.4117 7 6 2.6433 -0.7301 3.5892 8 6 2.6895 0.2516 4.7617 9 6 3.1853 -0.4604 5.9939 10 6 2.2862 -1.0709 6.8482 11 6 2.7414 -1.7282 7.9759 12 6 4.0948 -1.7660 8.2548 13 6 4.9934 -1.1509 7.4033 14 6 4.5387 -0.4981 6.2728 15 6 2.0323 -0.7104 -1.2304 16 8 2.2929 -1.8940 -1.1834 17 7 2.1921 -0.0306 -2.3831 18 6 2.5740 -0.7413 -3.6059 19 6 2.6307 0.2462 -4.7731 20 6 3.6830 1.3195 -4.6659 21 1 3.4333 2.2798 -4.2392 22 6 4.9645 1.0758 -5.1124 23 7 5.8981 1.9898 -4.9624 24 14 5.3745 -0.5526 -5.9307 25 1 5.0351 -0.4804 -7.3745 26 1 6.8247 -0.8328 -5.7765 27 1 4.5898 -1.6392 -5.2913 28 6 1.3094 0.6173 -5.4494 29 6 2.3094 -0.2911 -6.1692 30 1 -0.3633 0.5382 -0.8755 31 1 -0.3633 -1.0273 -0.0284 32 1 -0.3634 0.4891 0.9038 33 1 2.2490 -1.6318 1.1527 34 1 1.9695 -1.5523 3.8301 35 1 3.6433 -1.1224 3.4041 36 1 3.3634 1.0738 4.5209 37 1 1.6895 0.6438 4.9468 38 1 1.2284 -1.0373 6.6328 39 1 2.0393 -2.2085 8.6413 40 1 4.4500 -2.2757 9.1382 41 1 6.0508 -1.1801 7.6215 42 1 5.2407 -0.0170 5.6080 43 1 2.0543 0.9294 -2.4031 44 1 3.5538 -1.1989 -3.4691 45 1 1.8379 -1.5160 -3.8208 46 1 6.7998 1.8182 -5.2762 47 1 0.3996 0.1582 -5.0625 48 1 1.2014 1.6377 -5.8170 49 1 2.8588 0.1321 -7.0101 50 1 2.0580 -1.3481 -6.2561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337767238.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:03 Heat of formation + Delta-G solvation = -59.265753 kcal Electronic energy + Delta-G solvation = -28863.439614 eV Core-core repulsion = 24854.760267 eV Total energy + Delta-G solvation = -4008.679346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.47892 -40.49417 -39.90219 -38.77524 -36.09656 -35.13027 -34.96042 -34.23127 -32.16012 -31.73396 -30.28493 -28.55788 -27.32274 -26.07964 -24.51185 -23.42423 -23.35134 -22.00855 -21.39112 -21.26528 -20.91708 -19.01535 -18.41412 -17.73653 -17.48640 -17.13065 -16.94840 -16.77809 -16.37234 -16.12999 -15.88247 -15.74869 -15.38556 -14.94917 -14.78194 -14.53438 -14.47704 -14.28065 -14.10850 -13.98079 -13.85425 -13.64217 -13.38813 -13.28253 -13.10816 -12.79604 -12.69159 -12.67015 -12.19975 -12.17620 -12.00251 -11.88215 -11.71439 -11.58469 -11.09321 -11.01413 -10.96182 -10.67495 -10.40801 -10.18576 -9.96417 -9.78807 -9.58629 -8.30979 -6.37830 0.45747 0.53394 1.33458 1.38402 1.42468 1.47930 1.61434 1.88422 2.35070 2.43164 2.91717 3.03929 3.21197 3.57265 3.72020 3.94378 4.00583 4.01092 4.06025 4.08109 4.18497 4.25675 4.29030 4.35393 4.36603 4.40965 4.51646 4.61455 4.65657 4.66408 4.70384 4.76823 4.82735 4.87293 4.96232 5.08529 5.09758 5.13382 5.21799 5.22173 5.28536 5.32489 5.46226 5.50922 5.61406 5.66645 5.68483 5.75815 6.15970 6.26938 6.45739 6.56276 6.72007 7.13976 7.16793 7.33000 8.83531 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016175 B = 0.001951 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.689686 B =14349.279870 C =15193.998821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.129 3.871 3 H 0.101 0.899 4 N -0.712 5.712 5 C 0.515 3.485 6 O -0.575 6.575 7 C -0.124 4.124 8 C -0.059 4.059 9 C -0.091 4.091 10 C -0.125 4.125 11 C -0.126 4.126 12 C -0.133 4.133 13 C -0.128 4.128 14 C -0.131 4.131 15 C 0.508 3.492 16 O -0.579 6.579 17 N -0.695 5.695 18 C 0.165 3.835 19 C -0.044 4.044 20 C -0.479 4.479 21 H 0.044 0.956 22 C 0.023 3.977 23 N -0.944 5.944 24 Si 0.933 3.067 25 H -0.264 1.264 26 H -0.305 1.305 27 H -0.243 1.243 28 C -0.150 4.150 29 C -0.194 4.194 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.415 0.585 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.125 0.875 43 H 0.411 0.589 44 H 0.036 0.964 45 H 0.065 0.935 46 H 0.264 0.736 47 H 0.106 0.894 48 H 0.085 0.915 49 H 0.077 0.923 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.051 -9.474 21.990 25.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.021 3.979 3 H 0.119 0.881 4 N -0.365 5.365 5 C 0.304 3.696 6 O -0.454 6.454 7 C -0.164 4.164 8 C -0.097 4.097 9 C -0.091 4.091 10 C -0.143 4.143 11 C -0.144 4.144 12 C -0.151 4.151 13 C -0.146 4.146 14 C -0.149 4.149 15 C 0.294 3.706 16 O -0.459 6.459 17 N -0.344 5.344 18 C 0.041 3.959 19 C -0.045 4.045 20 C -0.517 4.517 21 H 0.063 0.937 22 C -0.176 4.176 23 N -0.584 5.584 24 Si 0.759 3.241 25 H -0.189 1.189 26 H -0.233 1.233 27 H -0.166 1.166 28 C -0.187 4.187 29 C -0.232 4.232 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.252 0.748 34 H 0.137 0.863 35 H 0.125 0.875 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.152 0.848 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.143 0.857 43 H 0.247 0.753 44 H 0.054 0.946 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.124 0.876 48 H 0.103 0.897 49 H 0.096 0.904 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.903 -9.429 21.983 25.889 hybrid contribution 1.088 -0.145 -0.829 1.376 sum -8.815 -9.574 21.155 24.837 Atomic orbital electron populations 1.21998 0.90694 1.03508 1.04141 1.20724 0.97203 0.97216 0.82780 0.88112 1.45879 1.67232 1.15052 1.08384 1.21251 0.76401 0.86944 0.85031 1.90700 1.51578 1.17520 1.85650 1.21646 1.04558 0.99741 0.90441 1.20237 1.02476 0.96511 0.90472 1.19930 0.93849 0.98808 0.96529 1.21306 1.00134 0.97984 0.94908 1.21456 0.96297 0.99140 0.97462 1.21476 0.93598 0.99782 1.00202 1.21425 1.00739 0.97746 0.94720 1.21293 0.95346 1.00145 0.98146 1.20886 0.77319 0.87256 0.85148 1.90633 1.52975 1.17041 1.85285 1.45847 1.67665 1.12475 1.08435 1.20912 0.98215 0.93305 0.83430 1.19476 0.97119 0.97339 0.90540 1.20359 0.93151 0.98217 1.39959 0.93743 1.25767 0.96206 0.99529 0.96050 1.70027 1.03080 1.36711 1.48553 0.85999 0.76218 0.81767 0.80124 1.18881 1.23299 1.16599 1.22884 0.92653 0.99623 1.03504 1.23043 1.04917 0.99333 0.95865 0.89704 0.91312 0.90737 0.74753 0.86344 0.87520 0.91471 0.90526 0.84844 0.84187 0.84328 0.84697 0.85740 0.75263 0.94575 0.91668 0.92710 0.87556 0.89686 0.90400 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.47 71.98 0.68 -2.37 16 2 C 0.13 3.40 2.97 44.24 0.13 3.53 16 3 H 0.10 2.85 7.58 -2.38 -0.02 2.83 16 4 N -0.71 -16.89 5.05 -446.09 -2.25 -19.15 16 5 C 0.52 12.20 7.79 87.66 0.68 12.88 16 6 O -0.58 -17.65 15.64 -3.03 -0.05 -17.70 16 7 C -0.12 -2.04 5.68 29.85 0.17 -1.87 16 8 C -0.06 -1.05 4.63 29.85 0.14 -0.91 16 9 C -0.09 -1.51 5.13 -19.87 -0.10 -1.62 16 10 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 11 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 12 C -0.13 -1.73 10.05 22.27 0.22 -1.50 16 13 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 14 C -0.13 -2.17 9.70 22.27 0.22 -1.95 16 15 C 0.51 16.38 7.02 87.66 0.62 16.99 16 16 O -0.58 -21.49 16.04 -3.02 -0.05 -21.54 16 17 N -0.70 -23.86 5.47 -463.06 -2.53 -26.40 16 18 C 0.17 6.39 5.22 86.38 0.45 6.84 16 19 C -0.04 -1.79 0.87 -52.93 -0.05 -1.83 16 20 C -0.48 -24.94 9.19 25.60 0.24 -24.70 16 21 H 0.04 2.56 8.06 -2.91 -0.02 2.53 16 22 C 0.02 1.25 5.47 84.65 0.46 1.72 16 23 N -0.94 -57.22 13.96 21.45 0.30 -56.92 16 24 Si 0.93 43.51 24.70 68.60 1.69 45.21 16 25 H -0.26 -11.66 7.02 99.48 0.70 -10.96 16 26 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16 27 H -0.24 -10.53 6.08 99.48 0.61 -9.92 16 28 C -0.15 -5.05 9.96 30.62 0.30 -4.74 16 29 C -0.19 -7.13 7.56 30.62 0.23 -6.90 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.41 9.09 7.80 -92.71 -0.72 8.37 16 34 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 37 H 0.08 1.41 8.04 -2.39 -0.02 1.39 16 38 H 0.13 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 41 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.12 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.41 13.51 8.34 -92.70 -0.77 12.74 16 44 H 0.04 1.60 6.93 -2.39 -0.02 1.58 16 45 H 0.07 2.29 8.10 -2.39 -0.02 2.27 16 46 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 47 H 0.11 2.94 8.14 -2.38 -0.02 2.92 16 48 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 49 H 0.08 3.09 6.99 -2.39 -0.02 3.08 16 50 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -69.72 415.19 1.51 -68.21 By element: Atomic # 1 Polarization: 40.05 SS G_CDS: -0.66 Total: 39.39 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 5.06 Total: -11.11 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -4.49 Total: -102.47 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -0.10 Total: -39.24 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.69 Total: 45.21 kcal Total: -69.72 1.51 -68.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337767238.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.948 kcal (2) G-P(sol) polarization free energy of solvation -69.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds