Wall clock time and date at job start Wed Apr 1 2020 03:56:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46903 * 109.47174 * 2 1
4 4 C 1.46897 * 111.00245 * 164.18834 * 3 2 1
5 5 C 1.50696 * 109.47040 * 293.95475 * 4 3 2
6 6 C 1.38360 * 119.85463 * 90.00258 * 5 4 3
7 7 C 1.37957 * 120.14489 * 180.02562 * 6 5 4
8 8 C 1.39578 * 119.85503 * 359.97438 * 7 6 5
9 9 C 1.47844 * 120.14543 * 179.97438 * 8 7 6
10 10 O 1.21548 * 120.00111 * 172.53800 * 9 8 7
11 11 N 1.34773 * 119.99931 * 352.52969 * 9 8 7
12 12 C 1.47580 * 134.49281 * 180.56250 * 11 9 8
13 13 C 1.53948 * 86.11781 * 155.35968 * 12 11 9
14 14 O 1.42900 * 113.74583 * 269.15487 * 13 12 11
15 15 C 1.50702 * 113.73965 * 137.95162 * 13 12 11
16 16 H 1.08001 * 119.99901 * 17.32977 * 15 13 12
17 17 C 1.37876 * 120.00027 * 197.32256 * 15 13 12
18 18 N 1.31511 * 120.00356 * 192.73185 * 17 15 13
19 19 Si 1.86803 * 119.99928 * 12.73106 * 17 15 13
20 20 H 1.48503 * 109.47240 * 179.97438 * 19 17 15
21 21 H 1.48504 * 109.47305 * 300.00064 * 19 17 15
22 22 H 1.48505 * 109.47065 * 59.99594 * 19 17 15
23 23 C 1.47816 * 134.45911 * 0.43392 * 11 9 8
24 24 C 1.39574 * 119.70798 * 0.25170 * 8 7 6
25 25 C 1.37960 * 119.85511 * 359.51564 * 24 8 7
26 26 C 1.46896 * 110.99743 * 288.14815 * 3 2 1
27 27 C 1.53006 * 117.49523 * 242.00970 * 26 3 2
28 28 C 1.53002 * 117.49835 * 173.35350 * 26 3 2
29 29 H 1.09001 * 109.47511 * 303.29544 * 1 2 3
30 30 H 1.08997 * 109.47077 * 63.29715 * 1 2 3
31 31 H 1.09007 * 109.46873 * 183.29338 * 1 2 3
32 32 H 1.08990 * 109.47393 * 239.99970 * 2 1 3
33 33 H 1.09003 * 109.46958 * 119.99409 * 2 1 3
34 34 H 1.09002 * 109.47242 * 173.95454 * 4 3 2
35 35 H 1.08997 * 109.46904 * 53.95289 * 4 3 2
36 36 H 1.07998 * 119.92683 * 0.02562 * 6 5 4
37 37 H 1.08007 * 120.07347 * 179.97438 * 7 6 5
38 38 H 1.09003 * 113.77020 * 41.06254 * 12 11 9
39 39 H 1.08994 * 113.77655 * 269.66341 * 12 11 9
40 40 H 0.96691 * 114.00339 * 174.47130 * 14 13 12
41 41 H 0.97006 * 120.00066 * 354.90796 * 18 17 15
42 42 H 1.09004 * 113.76756 * 90.37540 * 23 11 9
43 43 H 1.09001 * 113.83233 * 318.91780 * 23 11 9
44 44 H 1.08002 * 120.06985 * 179.72801 * 24 8 7
45 45 H 1.07993 * 119.92655 * 180.23325 * 25 24 8
46 46 H 1.08995 * 115.55602 * 27.67654 * 26 3 2
47 47 H 1.08999 * 117.49918 * 0.02562 * 27 26 3
48 48 H 1.09000 * 117.49809 * 145.01976 * 27 26 3
49 49 H 1.08996 * 117.49935 * 214.97199 * 28 26 3
50 50 H 1.08997 * 117.49911 * 359.97281 * 28 26 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 3.4392 1.4415 0.3737
5 6 3.5991 1.0048 1.8070
6 6 3.8126 -0.3304 2.1005
7 6 3.9593 -0.7369 3.4106
8 6 3.8923 0.2021 4.4412
9 6 4.0480 -0.2266 5.8475
10 8 4.1253 0.6044 6.7312
11 7 4.1041 -1.5388 6.1497
12 6 4.2396 -2.3067 7.4027
13 6 3.5482 -3.4576 6.6493
14 8 2.1252 -3.4579 6.7799
15 6 4.1624 -4.8089 6.9102
16 1 4.8076 -4.9530 7.7642
17 6 3.9004 -5.8611 6.0587
18 7 4.2213 -7.0871 6.4102
19 14 3.0897 -5.5454 4.4056
20 1 2.9191 -6.8322 3.6841
21 1 1.7613 -4.9164 4.6178
22 1 3.9447 -4.6366 3.6005
23 6 4.0522 -2.7865 5.3588
24 6 3.6719 1.5467 4.1385
25 6 3.5317 1.9407 2.8238
26 6 1.7924 2.0237 -1.3032
27 6 3.0221 2.4881 -2.0863
28 6 2.1037 3.5169 -1.4220
29 1 -0.3634 0.5641 0.8590
30 1 -0.3633 0.4618 -0.9180
31 1 -0.3633 -1.0261 0.0590
32 1 1.8933 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8901
34 1 3.8039 2.4627 0.2622
35 1 4.0121 0.7783 -0.2743
36 1 3.8646 -1.0559 1.3022
37 1 4.1255 -1.7795 3.6384
38 1 3.6518 -1.9068 8.2289
39 1 5.2725 -2.5198 7.6780
40 1 1.6810 -4.1268 6.2412
41 1 4.7082 -7.2437 7.2344
42 1 5.0300 -3.1407 5.0323
43 1 3.3150 -2.7688 4.5561
44 1 3.6147 2.2775 4.9316
45 1 3.3649 2.9813 2.5881
46 1 0.9478 1.6387 -1.8746
47 1 3.9996 2.3194 -1.6346
48 1 2.9863 2.4090 -3.1728
49 1 1.4642 4.1142 -2.0718
50 1 2.4768 4.0255 -0.5330
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000356551566.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:56:10
Heat of formation + Delta-G solvation = 30.884387 kcal
Electronic energy + Delta-G solvation = -30462.831844 eV
Core-core repulsion = 26458.061701 eV
Total energy + Delta-G solvation = -4004.770143 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.41077 -39.68018 -38.48513 -37.32903 -34.83270 -34.32166 -32.67852 -32.45571
-31.05754 -30.00195 -28.66715 -26.39310 -25.79198 -24.79603 -23.34827 -22.80239
-22.38883 -22.07319 -20.15629 -19.85395 -19.13096 -18.02150 -17.15456 -17.06966
-16.26700 -16.20721 -15.69586 -15.32394 -15.06308 -14.72713 -14.58597 -14.24898
-14.05548 -13.83190 -13.61819 -13.53296 -13.30167 -13.08475 -12.89547 -12.69367
-12.33675 -12.29884 -12.03851 -11.99484 -11.89147 -11.75726 -11.48640 -11.43823
-11.30751 -10.95833 -10.80256 -10.78417 -10.66535 -10.48704 -10.06275 -9.55870
-9.46129 -9.05475 -8.96641 -8.86865 -8.52590 -8.43264 -8.06242 -6.77609
-4.51913 0.87622 1.37431 2.98719 3.02252 3.07735 3.19214 3.36829
3.38175 3.67591 4.01669 4.12076 4.43445 4.47582 4.56707 4.61282
4.67211 4.72124 4.81917 4.90752 4.94965 5.00814 5.09728 5.17080
5.23091 5.28821 5.32364 5.36625 5.39555 5.42301 5.55655 5.57758
5.69813 5.73958 5.76815 5.77813 5.84619 5.94293 5.99574 6.02849
6.12295 6.22582 6.26378 6.33963 6.45296 6.53379 6.65997 6.68276
6.78739 6.88699 7.49196 8.03641 8.18947 8.52143 8.55026 8.66166
9.23780 10.58763
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.013340 B = 0.003048 C = 0.002648
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2098.509942 B = 9185.483754 C =10570.657159
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.041 3.959
3 N -0.500 5.500
4 C 0.089 3.911
5 C -0.063 4.063
6 C -0.124 4.124
7 C -0.100 4.100
8 C -0.118 4.118
9 C 0.571 3.429
10 O -0.556 6.556
11 N -0.625 5.625
12 C 0.130 3.870
13 C 0.200 3.800
14 O -0.565 6.565
15 C -0.615 4.615
16 H 0.071 0.929
17 C 0.035 3.965
18 N -0.886 5.886
19 Si 1.038 2.962
20 H -0.277 1.277
21 H -0.278 1.278
22 H -0.274 1.274
23 C 0.049 3.951
24 C -0.063 4.063
25 C -0.109 4.109
26 C 0.023 3.977
27 C -0.222 4.222
28 C -0.171 4.171
29 H 0.064 0.936
30 H 0.051 0.949
31 H 0.060 0.940
32 H 0.037 0.963
33 H 0.085 0.915
34 H 0.086 0.914
35 H 0.049 0.951
36 H 0.124 0.876
37 H 0.143 0.857
38 H 0.075 0.925
39 H 0.093 0.907
40 H 0.367 0.633
41 H 0.275 0.725
42 H 0.099 0.901
43 H 0.073 0.927
44 H 0.134 0.866
45 H 0.126 0.874
46 H 0.119 0.881
47 H 0.099 0.901
48 H 0.093 0.907
49 H 0.096 0.904
50 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.974 15.272 -18.041 23.824
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.086 4.086
3 N -0.222 5.222
4 C -0.037 4.037
5 C -0.064 4.064
6 C -0.143 4.143
7 C -0.119 4.119
8 C -0.121 4.121
9 C 0.361 3.639
10 O -0.437 6.437
11 N -0.358 5.358
12 C 0.009 3.991
13 C 0.159 3.841
14 O -0.373 6.373
15 C -0.653 4.653
16 H 0.089 0.911
17 C -0.173 4.173
18 N -0.519 5.519
19 Si 0.866 3.134
20 H -0.202 1.202
21 H -0.205 1.205
22 H -0.200 1.200
23 C -0.073 4.073
24 C -0.082 4.082
25 C -0.127 4.127
26 C -0.086 4.086
27 C -0.261 4.261
28 C -0.209 4.209
29 H 0.083 0.917
30 H 0.070 0.930
31 H 0.079 0.921
32 H 0.055 0.945
33 H 0.104 0.896
34 H 0.105 0.895
35 H 0.067 0.933
36 H 0.142 0.858
37 H 0.161 0.839
38 H 0.094 0.906
39 H 0.111 0.889
40 H 0.217 0.783
41 H 0.085 0.915
42 H 0.117 0.883
43 H 0.090 0.910
44 H 0.152 0.848
45 H 0.144 0.856
46 H 0.137 0.863
47 H 0.118 0.882
48 H 0.112 0.888
49 H 0.115 0.885
50 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -3.681 15.853 -18.174 24.396
hybrid contribution 1.060 -0.143 0.272 1.103
sum -2.622 15.710 -17.902 23.962
Atomic orbital electron populations
1.21765 0.94576 1.01754 1.02259 1.22274 0.96512 0.88194 1.01616
1.61901 1.16528 1.17755 1.26040 1.21180 0.88855 1.01642 0.92067
1.19839 0.98287 0.93467 0.94808 1.20994 1.01584 0.95276 0.96426
1.22080 0.96724 1.00736 0.92321 1.20018 1.04494 0.94522 0.93073
1.17932 0.76914 0.80936 0.88069 1.90712 1.52660 1.51156 1.49153
1.50023 1.70101 1.03374 1.12297 1.23249 1.00396 0.87332 0.88166
1.20427 0.80162 0.94145 0.89395 1.86389 1.19768 1.60457 1.70710
1.22201 1.34232 0.94149 1.14742 0.91077 1.25819 0.96319 0.92410
1.02748 1.70797 1.34619 1.20177 1.26307 0.84185 0.76432 0.76696
0.76125 1.20211 1.20509 1.19957 1.24889 1.01879 0.81839 0.98711
1.21254 0.95433 0.94792 0.96730 1.20897 1.00558 0.99503 0.91753
1.22678 0.98740 0.96479 0.90731 1.23600 0.96442 1.06112 0.99915
1.23071 1.03021 0.92117 1.02699 0.91681 0.93040 0.92113 0.94490
0.89628 0.89548 0.93321 0.85805 0.83918 0.90624 0.88881 0.78337
0.91487 0.88348 0.90953 0.84792 0.85569 0.86323 0.88248 0.88850
0.88521 0.88479
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.26 9.94 37.16 0.37 -0.89 16
2 C 0.04 0.38 5.50 -3.82 -0.02 0.36 16
3 N -0.50 -4.62 4.66 -228.09 -1.06 -5.68 16
4 C 0.09 0.81 3.73 -4.98 -0.02 0.79 16
5 C -0.06 -0.72 4.94 -104.53 -0.52 -1.23 16
6 C -0.12 -1.53 7.82 -39.64 -0.31 -1.84 16
7 C -0.10 -1.50 9.10 -39.18 -0.36 -1.86 16
8 C -0.12 -1.99 5.87 -104.97 -0.62 -2.60 16
9 C 0.57 11.60 7.99 -12.33 -0.10 11.50 16
10 O -0.56 -12.67 17.10 5.32 0.09 -12.58 16
11 N -0.63 -12.76 3.61 -179.22 -0.65 -13.41 16
12 C 0.13 2.75 8.23 -2.97 -0.02 2.72 16
13 C 0.20 4.47 1.07 -90.84 -0.10 4.37 16
14 O -0.56 -12.93 13.46 -35.23 -0.47 -13.40 16
15 C -0.62 -15.54 9.04 -34.44 -0.31 -15.86 16
16 H 0.07 1.94 8.06 -52.49 -0.42 1.51 16
17 C 0.04 0.90 5.45 -17.82 -0.10 0.80 16
18 N -0.89 -24.60 13.70 55.43 0.76 -23.84 16
19 Si 1.04 21.37 24.62 -169.99 -4.18 17.19 16
20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16
21 H -0.28 -5.20 5.75 56.52 0.33 -4.87 16
22 H -0.27 -4.99 6.42 56.52 0.36 -4.63 16
23 C 0.05 0.97 3.21 -2.84 -0.01 0.96 16
24 C -0.06 -0.92 9.59 -39.19 -0.38 -1.30 16
25 C -0.11 -1.30 9.68 -39.64 -0.38 -1.69 16
26 C 0.02 0.18 5.79 -67.71 -0.39 -0.22 16
27 C -0.22 -1.49 9.51 -26.69 -0.25 -1.75 16
28 C -0.17 -1.18 9.98 -26.69 -0.27 -1.45 16
29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
30 H 0.05 0.39 6.87 -51.93 -0.36 0.03 16
31 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16
32 H 0.04 0.31 8.05 -51.93 -0.42 -0.10 16
33 H 0.09 0.89 5.13 -51.93 -0.27 0.63 16
34 H 0.09 0.71 6.17 -51.93 -0.32 0.39 16
35 H 0.05 0.42 7.62 -51.93 -0.40 0.02 16
36 H 0.12 1.27 7.73 -52.49 -0.41 0.86 16
37 H 0.14 2.20 3.88 -52.48 -0.20 1.99 16
38 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16
39 H 0.09 1.85 8.09 -51.93 -0.42 1.43 16
40 H 0.37 7.73 5.93 45.56 0.27 8.00 16
41 H 0.27 7.63 8.73 -40.82 -0.36 7.27 16
42 H 0.10 1.86 8.03 -51.93 -0.42 1.44 16
43 H 0.07 1.32 5.13 -51.93 -0.27 1.05 16
44 H 0.13 1.95 7.67 -52.49 -0.40 1.54 16
45 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16
46 H 0.12 0.84 6.78 -51.93 -0.35 0.49 16
47 H 0.10 0.68 5.90 -51.93 -0.31 0.37 16
48 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16
49 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16
50 H 0.10 0.71 7.69 -51.93 -0.40 0.31 16
LS Contribution 389.11 15.07 5.86 5.86
Total: -1.00 -29.88 389.11 -10.32 -40.20
By element:
Atomic # 1 Polarization: 21.71 SS G_CDS: -6.89 Total: 14.83 kcal
Atomic # 6 Polarization: -5.38 SS G_CDS: -3.78 Total: -9.16 kcal
Atomic # 7 Polarization: -41.98 SS G_CDS: -0.95 Total: -42.93 kcal
Atomic # 8 Polarization: -25.60 SS G_CDS: -0.38 Total: -25.98 kcal
Atomic # 14 Polarization: 21.37 SS G_CDS: -4.18 Total: 17.19 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -29.88 -10.32 -40.20 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000356551566.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.087 kcal
(2) G-P(sol) polarization free energy of solvation -29.882 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.205 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.884 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds