Wall clock time and date at job start Wed Apr 1 2020 03:56:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46903 * 109.47174 * 2 1
4 4 C 1.46897 * 111.00245 * 164.18834 * 3 2 1
5 5 C 1.50696 * 109.47040 * 293.95475 * 4 3 2
6 6 C 1.38360 * 119.85463 * 90.00258 * 5 4 3
7 7 C 1.37957 * 120.14489 * 180.02562 * 6 5 4
8 8 C 1.39578 * 119.85503 * 359.97438 * 7 6 5
9 9 C 1.47844 * 120.14543 * 179.97438 * 8 7 6
10 10 O 1.21548 * 120.00111 * 172.53800 * 9 8 7
11 11 N 1.34773 * 119.99931 * 352.52969 * 9 8 7
12 12 C 1.47580 * 134.49281 * 180.56250 * 11 9 8
13 13 C 1.53948 * 86.11781 * 155.35968 * 12 11 9
14 14 O 1.42900 * 113.74583 * 269.15487 * 13 12 11
15 15 C 1.50702 * 113.73965 * 137.95162 * 13 12 11
16 16 H 1.08001 * 119.99901 * 17.32977 * 15 13 12
17 17 C 1.37876 * 120.00027 * 197.32256 * 15 13 12
18 18 N 1.31511 * 120.00356 * 192.73185 * 17 15 13
19 19 Si 1.86803 * 119.99928 * 12.73106 * 17 15 13
20 20 H 1.48503 * 109.47240 * 179.97438 * 19 17 15
21 21 H 1.48504 * 109.47305 * 300.00064 * 19 17 15
22 22 H 1.48505 * 109.47065 * 59.99594 * 19 17 15
23 23 C 1.47816 * 134.45911 * 0.43392 * 11 9 8
24 24 C 1.39574 * 119.70798 * 0.25170 * 8 7 6
25 25 C 1.37960 * 119.85511 * 359.51564 * 24 8 7
26 26 C 1.46896 * 110.99743 * 288.14815 * 3 2 1
27 27 C 1.53006 * 117.49523 * 242.00970 * 26 3 2
28 28 C 1.53002 * 117.49835 * 173.35350 * 26 3 2
29 29 H 1.09001 * 109.47511 * 303.29544 * 1 2 3
30 30 H 1.08997 * 109.47077 * 63.29715 * 1 2 3
31 31 H 1.09007 * 109.46873 * 183.29338 * 1 2 3
32 32 H 1.08990 * 109.47393 * 239.99970 * 2 1 3
33 33 H 1.09003 * 109.46958 * 119.99409 * 2 1 3
34 34 H 1.09002 * 109.47242 * 173.95454 * 4 3 2
35 35 H 1.08997 * 109.46904 * 53.95289 * 4 3 2
36 36 H 1.07998 * 119.92683 * 0.02562 * 6 5 4
37 37 H 1.08007 * 120.07347 * 179.97438 * 7 6 5
38 38 H 1.09003 * 113.77020 * 41.06254 * 12 11 9
39 39 H 1.08994 * 113.77655 * 269.66341 * 12 11 9
40 40 H 0.96691 * 114.00339 * 174.47130 * 14 13 12
41 41 H 0.97006 * 120.00066 * 354.90796 * 18 17 15
42 42 H 1.09004 * 113.76756 * 90.37540 * 23 11 9
43 43 H 1.09001 * 113.83233 * 318.91780 * 23 11 9
44 44 H 1.08002 * 120.06985 * 179.72801 * 24 8 7
45 45 H 1.07993 * 119.92655 * 180.23325 * 25 24 8
46 46 H 1.08995 * 115.55602 * 27.67654 * 26 3 2
47 47 H 1.08999 * 117.49918 * 0.02562 * 27 26 3
48 48 H 1.09000 * 117.49809 * 145.01976 * 27 26 3
49 49 H 1.08996 * 117.49935 * 214.97199 * 28 26 3
50 50 H 1.08997 * 117.49911 * 359.97281 * 28 26 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 3.4392 1.4415 0.3737
5 6 3.5991 1.0048 1.8070
6 6 3.8126 -0.3304 2.1005
7 6 3.9593 -0.7369 3.4106
8 6 3.8923 0.2021 4.4412
9 6 4.0480 -0.2266 5.8475
10 8 4.1253 0.6044 6.7312
11 7 4.1041 -1.5388 6.1497
12 6 4.2396 -2.3067 7.4027
13 6 3.5482 -3.4576 6.6493
14 8 2.1252 -3.4579 6.7799
15 6 4.1624 -4.8089 6.9102
16 1 4.8076 -4.9530 7.7642
17 6 3.9004 -5.8611 6.0587
18 7 4.2213 -7.0871 6.4102
19 14 3.0897 -5.5454 4.4056
20 1 2.9191 -6.8322 3.6841
21 1 1.7613 -4.9164 4.6178
22 1 3.9447 -4.6366 3.6005
23 6 4.0522 -2.7865 5.3588
24 6 3.6719 1.5467 4.1385
25 6 3.5317 1.9407 2.8238
26 6 1.7924 2.0237 -1.3032
27 6 3.0221 2.4881 -2.0863
28 6 2.1037 3.5169 -1.4220
29 1 -0.3634 0.5641 0.8590
30 1 -0.3633 0.4618 -0.9180
31 1 -0.3633 -1.0261 0.0590
32 1 1.8933 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8901
34 1 3.8039 2.4627 0.2622
35 1 4.0121 0.7783 -0.2743
36 1 3.8646 -1.0559 1.3022
37 1 4.1255 -1.7795 3.6384
38 1 3.6518 -1.9068 8.2289
39 1 5.2725 -2.5198 7.6780
40 1 1.6810 -4.1268 6.2412
41 1 4.7082 -7.2437 7.2344
42 1 5.0300 -3.1407 5.0323
43 1 3.3150 -2.7688 4.5561
44 1 3.6147 2.2775 4.9316
45 1 3.3649 2.9813 2.5881
46 1 0.9478 1.6387 -1.8746
47 1 3.9996 2.3194 -1.6346
48 1 2.9863 2.4090 -3.1728
49 1 1.4642 4.1142 -2.0718
50 1 2.4768 4.0255 -0.5330
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000356551566.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:56:09
Heat of formation + Delta-G solvation = 10.096512 kcal
Electronic energy + Delta-G solvation = -30463.733274 eV
Core-core repulsion = 26458.061701 eV
Total energy + Delta-G solvation = -4005.671573 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.78674 -40.68399 -39.60766 -38.73519 -36.09662 -35.46561 -34.66110 -33.40796
-32.09523 -31.05682 -30.06304 -27.77158 -27.22575 -26.27556 -24.11135 -23.54493
-23.22871 -23.00071 -21.70294 -20.67695 -20.52117 -19.94262 -18.49517 -18.08636
-17.54253 -17.17835 -16.87214 -16.74437 -16.31557 -15.86717 -15.72261 -15.46245
-15.23406 -15.02193 -14.72388 -14.67873 -14.57465 -14.22586 -14.03556 -13.98177
-13.78110 -13.70749 -13.16355 -13.00815 -12.82665 -12.53297 -12.46344 -12.43001
-12.18779 -12.12643 -12.04046 -11.96846 -11.77072 -11.42577 -11.30112 -11.17747
-11.13277 -10.89222 -10.33379 -9.99122 -9.97499 -9.67841 -9.05863 -8.83427
-6.60314 -0.24582 0.36084 1.40876 1.47151 1.59925 1.71425 1.79204
2.42435 2.61727 2.89346 2.92791 3.14584 3.19600 3.48593 3.64631
3.73188 3.79059 3.90482 3.94817 4.06243 4.13252 4.17105 4.22871
4.28043 4.31921 4.36716 4.45356 4.49236 4.53165 4.53323 4.64428
4.65810 4.71447 4.80860 4.84233 4.86706 4.93277 5.02019 5.06410
5.12858 5.15584 5.25684 5.29313 5.37637 5.38848 5.50362 5.58757
5.85877 5.90696 6.06417 6.17330 6.39516 6.60994 6.91947 6.98010
7.26063 8.51881
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.013340 B = 0.003048 C = 0.002648
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2098.509942 B = 9185.483754 C =10570.657159
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.040 3.960
3 N -0.511 5.511
4 C 0.092 3.908
5 C -0.050 4.050
6 C -0.118 4.118
7 C -0.106 4.106
8 C -0.146 4.146
9 C 0.566 3.434
10 O -0.593 6.593
11 N -0.627 5.627
12 C 0.123 3.877
13 C 0.193 3.807
14 O -0.573 6.573
15 C -0.620 4.620
16 H 0.033 0.967
17 C -0.008 4.008
18 N -0.919 5.919
19 Si 1.065 2.935
20 H -0.286 1.286
21 H -0.247 1.247
22 H -0.230 1.230
23 C 0.065 3.935
24 C -0.071 4.071
25 C -0.102 4.102
26 C 0.014 3.986
27 C -0.214 4.214
28 C -0.172 4.172
29 H 0.048 0.952
30 H 0.060 0.940
31 H 0.065 0.935
32 H 0.047 0.953
33 H 0.074 0.926
34 H 0.098 0.902
35 H 0.061 0.939
36 H 0.151 0.849
37 H 0.140 0.860
38 H 0.066 0.934
39 H 0.099 0.901
40 H 0.375 0.625
41 H 0.258 0.742
42 H 0.109 0.891
43 H 0.097 0.903
44 H 0.126 0.874
45 H 0.151 0.849
46 H 0.124 0.876
47 H 0.100 0.900
48 H 0.102 0.898
49 H 0.105 0.895
50 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.745 17.017 -22.328 28.323
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.087 4.087
3 N -0.233 5.233
4 C -0.035 4.035
5 C -0.050 4.050
6 C -0.136 4.136
7 C -0.124 4.124
8 C -0.149 4.149
9 C 0.359 3.641
10 O -0.476 6.476
11 N -0.360 5.360
12 C 0.001 3.999
13 C 0.151 3.849
14 O -0.383 6.383
15 C -0.658 4.658
16 H 0.052 0.948
17 C -0.209 4.209
18 N -0.553 5.553
19 Si 0.884 3.116
20 H -0.212 1.212
21 H -0.172 1.172
22 H -0.153 1.153
23 C -0.057 4.057
24 C -0.090 4.090
25 C -0.121 4.121
26 C -0.095 4.095
27 C -0.253 4.253
28 C -0.210 4.210
29 H 0.068 0.932
30 H 0.079 0.921
31 H 0.084 0.916
32 H 0.065 0.935
33 H 0.093 0.907
34 H 0.116 0.884
35 H 0.079 0.921
36 H 0.168 0.832
37 H 0.157 0.843
38 H 0.084 0.916
39 H 0.117 0.883
40 H 0.225 0.775
41 H 0.067 0.933
42 H 0.127 0.873
43 H 0.114 0.886
44 H 0.144 0.856
45 H 0.168 0.832
46 H 0.142 0.858
47 H 0.118 0.882
48 H 0.120 0.880
49 H 0.124 0.876
50 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -4.444 17.618 -22.452 28.884
hybrid contribution 1.300 -0.636 1.642 2.189
sum -3.143 16.982 -20.810 27.043
Atomic orbital electron populations
1.21739 0.94446 1.01903 1.02026 1.22272 0.96665 0.88276 1.01490
1.61879 1.16360 1.17860 1.27243 1.21200 0.89264 1.02567 0.90433
1.20155 0.95878 0.93005 0.95999 1.21261 1.00220 0.96268 0.95853
1.22036 0.97293 1.00094 0.92962 1.19840 1.07899 0.95913 0.91208
1.18580 0.75801 0.80261 0.89497 1.90676 1.54361 1.51881 1.50666
1.49998 1.70323 1.03867 1.11775 1.23239 1.00551 0.87470 0.88617
1.20378 0.79799 0.92791 0.91883 1.86373 1.19851 1.60699 1.71365
1.22268 1.33720 0.96225 1.13568 0.94849 1.27340 0.96066 0.91420
1.06079 1.70948 1.36595 1.21749 1.26046 0.83958 0.77978 0.77559
0.72134 1.21160 1.17178 1.15317 1.24761 1.02809 0.80462 0.97678
1.21294 0.95936 0.93870 0.97899 1.21145 0.99328 1.00976 0.90620
1.22735 0.99570 0.96881 0.90346 1.23628 0.96011 1.05312 1.00376
1.23128 1.03233 0.91874 1.02777 0.93248 0.92087 0.91640 0.93486
0.90727 0.88429 0.92113 0.83163 0.84307 0.91555 0.88335 0.77462
0.93295 0.87340 0.88565 0.85592 0.83168 0.85809 0.88154 0.87983
0.87616 0.88914
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.07 9.94 71.98 0.72 -1.36 16
2 C 0.04 0.60 5.50 86.30 0.47 1.07 16
3 N -0.51 -7.57 4.66 -875.55 -4.08 -11.64 16
4 C 0.09 1.28 3.73 85.56 0.32 1.60 16
5 C -0.05 -0.94 4.94 -19.81 -0.10 -1.04 16
6 C -0.12 -2.43 7.82 22.23 0.17 -2.26 16
7 C -0.11 -2.87 9.10 22.53 0.21 -2.67 16
8 C -0.15 -4.73 5.87 -20.09 -0.12 -4.85 16
9 C 0.57 22.97 7.99 86.79 0.69 23.67 16
10 O -0.59 -27.59 17.10 -3.87 -0.07 -27.66 16
11 N -0.63 -25.35 3.61 -843.02 -3.04 -28.40 16
12 C 0.12 5.31 8.23 86.49 0.71 6.03 16
13 C 0.19 8.56 1.07 -10.88 -0.01 8.54 16
14 O -0.57 -25.74 13.46 -148.98 -2.01 -27.75 16
15 C -0.62 -32.01 9.04 25.60 0.23 -31.78 16
16 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16
17 C -0.01 -0.42 5.45 84.65 0.46 0.05 16
18 N -0.92 -52.43 13.70 21.45 0.29 -52.14 16
19 Si 1.06 40.62 24.62 68.60 1.69 42.31 16
20 H -0.29 -11.39 7.11 99.48 0.71 -10.68 16
21 H -0.25 -8.15 5.75 99.48 0.57 -7.58 16
22 H -0.23 -7.16 6.42 99.48 0.64 -6.53 16
23 C 0.06 2.42 3.21 86.44 0.28 2.69 16
24 C -0.07 -1.99 9.59 22.53 0.22 -1.77 16
25 C -0.10 -2.16 9.68 22.23 0.22 -1.95 16
26 C 0.01 0.16 5.79 44.92 0.26 0.42 16
27 C -0.21 -2.09 9.51 30.62 0.29 -1.79 16
28 C -0.17 -1.82 9.98 30.62 0.31 -1.51 16
29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
30 H 0.06 0.75 6.87 -2.39 -0.02 0.73 16
31 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16
32 H 0.05 0.61 8.05 -2.39 -0.02 0.59 16
33 H 0.07 1.27 5.13 -2.39 -0.01 1.26 16
34 H 0.10 1.18 6.17 -2.39 -0.01 1.17 16
35 H 0.06 0.74 7.62 -2.39 -0.02 0.72 16
36 H 0.15 2.32 7.73 -2.91 -0.02 2.30 16
37 H 0.14 3.80 3.88 -2.91 -0.01 3.79 16
38 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16
39 H 0.10 4.05 8.09 -2.39 -0.02 4.03 16
40 H 0.37 15.09 5.93 -74.06 -0.44 14.65 16
41 H 0.26 15.07 8.73 -92.70 -0.81 14.26 16
42 H 0.11 3.84 8.03 -2.38 -0.02 3.82 16
43 H 0.10 3.16 5.13 -2.39 -0.01 3.14 16
44 H 0.13 3.65 7.67 -2.91 -0.02 3.63 16
45 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16
46 H 0.12 1.33 6.78 -2.39 -0.02 1.32 16
47 H 0.10 0.97 5.90 -2.39 -0.01 0.95 16
48 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16
49 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16
50 H 0.09 1.07 7.69 -2.39 -0.02 1.05 16
Total: -1.00 -67.36 389.11 -1.60 -68.95
By element:
Atomic # 1 Polarization: 42.93 SS G_CDS: 0.29 Total: 43.22 kcal
Atomic # 6 Polarization: -12.22 SS G_CDS: 5.32 Total: -6.90 kcal
Atomic # 7 Polarization: -85.35 SS G_CDS: -6.83 Total: -92.18 kcal
Atomic # 8 Polarization: -53.33 SS G_CDS: -2.07 Total: -55.41 kcal
Atomic # 14 Polarization: 40.62 SS G_CDS: 1.69 Total: 42.31 kcal
Total: -67.36 -1.60 -68.95 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000356551566.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.051 kcal
(2) G-P(sol) polarization free energy of solvation -67.357 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.694 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.598 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.954 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.097 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds