Wall clock time and date at job start Wed Apr 1 2020 03:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47184 * 2 1 4 4 C 1.45647 * 117.70321 * 89.99229 * 3 2 1 5 5 C 1.52993 * 110.77234 * 158.10472 * 4 3 2 6 6 N 1.47259 * 108.18784 * 46.72541 * 5 4 3 7 7 C 1.34781 * 121.35189 * 118.22616 * 6 5 4 8 8 O 1.21281 * 119.99829 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99850 * 359.97438 * 7 6 5 10 10 C 1.53005 * 109.46928 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.46580 * 55.00437 * 10 9 7 12 12 C 1.50695 * 109.47109 * 294.99887 * 10 9 7 13 13 H 1.07998 * 120.00591 * 334.72742 * 12 10 9 14 14 C 1.37884 * 119.99611 * 154.72051 * 12 10 9 15 15 N 1.31519 * 119.99563 * 184.85397 * 14 12 10 16 16 Si 1.86792 * 120.00007 * 4.86087 * 14 12 10 17 17 H 1.48494 * 109.47565 * 84.63306 * 16 14 12 18 18 H 1.48500 * 109.47169 * 204.63314 * 16 14 12 19 19 H 1.48500 * 109.47439 * 324.62935 * 16 14 12 20 20 C 1.50701 * 109.46701 * 175.00137 * 10 9 7 21 21 C 1.38232 * 120.00310 * 55.27898 * 20 10 9 22 22 C 1.38227 * 119.99963 * 179.74176 * 21 20 10 23 23 C 1.38231 * 120.00281 * 0.52693 * 22 21 20 24 24 C 1.38241 * 119.99985 * 359.74756 * 23 22 21 25 25 C 1.38235 * 119.99683 * 359.97438 * 24 23 22 26 26 C 1.47048 * 117.29800 * 298.49930 * 6 5 4 27 27 H 1.08995 * 109.57226 * 162.55465 * 26 6 5 28 28 C 1.52999 * 109.56862 * 282.91773 * 26 6 5 29 29 C 1.33380 * 117.70733 * 269.97997 * 3 2 1 30 30 O 1.21281 * 118.48675 * 4.31763 * 29 3 2 31 31 H 1.09003 * 109.46756 * 60.00276 * 1 2 3 32 32 H 1.09001 * 109.46806 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47363 * 299.99761 * 1 2 3 34 34 H 1.08995 * 109.47363 * 240.00239 * 2 1 3 35 35 H 1.09004 * 109.47268 * 119.99606 * 2 1 3 36 36 H 1.09007 * 109.21727 * 37.77245 * 4 3 2 37 37 H 1.08995 * 109.22124 * 278.43780 * 4 3 2 38 38 H 1.09004 * 109.71782 * 287.05084 * 5 4 3 39 39 H 1.08999 * 109.72063 * 166.40718 * 5 4 3 40 40 H 1.08997 * 109.47016 * 300.00227 * 9 7 6 41 41 H 1.09003 * 109.47025 * 60.00083 * 9 7 6 42 42 H 0.97000 * 119.99652 * 180.02562 * 15 14 12 43 43 H 1.08005 * 119.99669 * 359.97438 * 21 20 10 44 44 H 1.08006 * 119.99940 * 180.30025 * 22 21 20 45 45 H 1.07999 * 120.00370 * 179.76758 * 23 22 21 46 46 H 1.07996 * 120.00012 * 179.97438 * 24 23 22 47 47 H 1.07998 * 120.00039 * 179.97438 * 25 24 23 48 48 H 1.08999 * 109.47087 * 59.99536 * 28 26 6 49 49 H 1.08998 * 109.47419 * 179.97438 * 28 26 6 50 50 H 1.09002 * 109.46882 * 299.99720 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2439 2.0197 1.2895 5 6 3.2226 3.1876 1.1529 6 7 2.8116 3.9987 -0.0054 7 6 2.4439 5.2876 0.1361 8 8 2.1093 5.9328 -0.8348 9 6 2.4474 5.9267 1.5009 10 6 1.9915 7.3825 1.3835 11 1 1.0213 7.4205 0.8882 12 6 2.9985 8.1606 0.5764 13 1 4.0255 7.8296 0.5302 14 6 2.6087 9.2951 -0.1033 15 7 3.4630 9.9202 -0.8838 16 14 0.8673 9.9443 0.0845 17 1 0.7869 10.8037 1.2928 18 1 0.5041 10.7413 -1.1147 19 1 -0.0737 8.8041 0.2245 20 6 1.8770 7.9855 2.7598 21 6 2.9605 7.9604 3.6178 22 6 2.8571 8.5182 4.8783 23 6 1.6668 9.0915 5.2849 24 6 0.5814 9.1115 4.4290 25 6 0.6866 8.5588 3.1663 26 6 2.8128 3.3436 -1.3219 27 1 2.2127 3.9266 -2.0204 28 6 4.2484 3.2375 -1.8402 29 6 2.2254 1.9658 -1.1809 30 8 1.9261 1.3588 -2.1872 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.6537 1.2876 1.9855 37 1 1.2950 2.3903 1.6773 38 1 4.2313 2.8056 0.9952 39 1 3.1967 3.7968 2.0564 40 1 1.7665 5.3849 2.1574 41 1 3.4551 5.8933 1.9151 42 1 3.1889 10.7186 -1.3617 43 1 3.8891 7.5083 3.3019 44 1 3.7052 8.5030 5.5469 45 1 1.5848 9.5240 6.2711 46 1 -0.3487 9.5590 4.7468 47 1 -0.1614 8.5741 2.4978 48 1 4.8442 2.6495 -1.1422 49 1 4.2475 2.7513 -2.8158 50 1 4.6763 4.2358 -1.9318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356900315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:20 Heat of formation + Delta-G solvation = -32.506519 kcal Electronic energy + Delta-G solvation = -31257.748991 eV Core-core repulsion = 27250.230012 eV Total energy + Delta-G solvation = -4007.518979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.95311 -39.19411 -38.42573 -36.55658 -35.49575 -34.18365 -32.00541 -31.58214 -31.09683 -30.28879 -28.97143 -28.48103 -26.11811 -24.88169 -23.94907 -22.88383 -22.35665 -21.92331 -20.36804 -19.12973 -17.82701 -17.44356 -17.24390 -16.96220 -16.29878 -16.03392 -15.75762 -15.01389 -14.75878 -14.56751 -14.27761 -14.14488 -13.95261 -13.91057 -13.57328 -13.28401 -12.95594 -12.84184 -12.66282 -12.53513 -12.43414 -12.27560 -12.20215 -12.08858 -11.91036 -11.82804 -11.78117 -11.38613 -11.18103 -11.14258 -10.75022 -10.62540 -10.41228 -10.04013 -9.92958 -9.62982 -9.23167 -9.06881 -8.96747 -8.50847 -8.45440 -8.26626 -7.85415 -6.01833 -3.98454 2.02346 2.08590 2.50507 2.69057 3.11220 3.27463 3.38751 3.41902 3.44265 4.26891 4.45513 4.51155 4.52171 4.75131 4.86838 4.95253 5.04554 5.10259 5.16761 5.19959 5.23153 5.32433 5.42891 5.45859 5.48324 5.49617 5.59713 5.62233 5.67766 5.74241 5.82093 5.88119 5.90717 5.97729 5.98862 6.15366 6.17974 6.21048 6.25389 6.43427 6.55170 6.64178 6.75903 6.98162 7.08248 7.18899 7.24784 7.53105 7.64505 7.68147 7.76026 8.00751 8.48245 8.78765 8.96895 9.61190 11.11163 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012278 B = 0.003582 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.874727 B = 7814.844142 C = 8941.455438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 N -0.603 5.603 4 C 0.098 3.902 5 C 0.095 3.905 6 N -0.630 5.630 7 C 0.521 3.479 8 O -0.488 6.488 9 C -0.111 4.111 10 C 0.048 3.952 11 H 0.054 0.946 12 C -0.484 4.484 13 H 0.072 0.928 14 C 0.084 3.916 15 N -0.896 5.896 16 Si 0.867 3.133 17 H -0.272 1.272 18 H -0.293 1.293 19 H -0.263 1.263 20 C -0.038 4.038 21 C -0.108 4.108 22 C -0.124 4.124 23 C -0.150 4.150 24 C -0.121 4.121 25 C -0.142 4.142 26 C 0.132 3.868 27 H 0.128 0.872 28 C -0.149 4.149 29 C 0.518 3.482 30 O -0.545 6.545 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.262 0.738 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.056 0.944 49 H 0.072 0.928 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.473 -17.274 10.234 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.336 5.336 4 C -0.026 4.026 5 C -0.029 4.029 6 N -0.370 5.370 7 C 0.310 3.690 8 O -0.357 6.357 9 C -0.151 4.151 10 C 0.028 3.972 11 H 0.072 0.928 12 C -0.521 4.521 13 H 0.090 0.910 14 C -0.119 4.119 15 N -0.533 5.533 16 Si 0.696 3.304 17 H -0.198 1.198 18 H -0.219 1.219 19 H -0.188 1.188 20 C -0.039 4.039 21 C -0.126 4.126 22 C -0.142 4.142 23 C -0.169 4.169 24 C -0.140 4.140 25 C -0.160 4.160 26 C 0.025 3.975 27 H 0.145 0.855 28 C -0.208 4.208 29 C 0.306 3.694 30 O -0.422 6.422 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.072 0.928 43 H 0.136 0.864 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.075 0.925 49 H 0.091 0.909 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.798 -16.981 9.016 19.310 hybrid contribution -0.847 0.604 0.222 1.064 sum -2.645 -16.377 9.238 18.988 Atomic orbital electron populations 1.22088 0.95778 1.02084 1.02522 1.21524 0.94816 0.82515 1.03075 1.47311 1.65620 1.14622 1.06019 1.21853 1.00385 0.95660 0.84695 1.21995 0.97593 0.92269 0.91065 1.48543 1.70157 1.11906 1.06421 1.20913 0.76085 0.79370 0.92635 1.90775 1.44239 1.60039 1.40692 1.21643 1.02588 0.98334 0.92575 1.18282 0.99694 0.89838 0.89340 0.92763 1.20584 0.95640 1.09018 1.26828 0.90994 1.24864 0.96588 0.96447 0.93970 1.69881 1.35271 1.19453 1.28726 0.87063 0.86476 0.79326 0.77547 1.19783 1.21916 1.18815 1.20757 0.91832 0.95453 0.95834 1.20915 0.98425 1.00239 0.92995 1.21043 0.97112 0.99312 0.96725 1.20862 0.93978 1.02673 0.99348 1.20969 0.98266 1.00216 0.94505 1.21088 0.97960 1.00913 0.96011 1.21184 0.99013 0.89481 0.87776 0.85475 1.21981 0.93711 1.03754 1.01350 1.20443 0.77658 0.88471 0.82844 1.90708 1.51491 1.64213 1.35764 0.92078 0.91714 0.92609 0.89734 0.90600 0.89570 0.91189 0.90509 0.87330 0.91108 0.89494 0.92770 0.86361 0.87123 0.87349 0.87317 0.87274 0.92467 0.90861 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.23 37.16 0.38 -1.11 16 2 C 0.10 0.93 5.88 -4.04 -0.02 0.90 16 3 N -0.60 -6.51 2.81 -174.88 -0.49 -7.00 16 4 C 0.10 0.79 6.57 -4.50 -0.03 0.76 16 5 C 0.09 0.88 6.31 -3.63 -0.02 0.86 16 6 N -0.63 -8.98 2.62 -166.55 -0.44 -9.41 16 7 C 0.52 9.67 7.47 -10.98 -0.08 9.59 16 8 O -0.49 -11.65 14.54 5.56 0.08 -11.57 16 9 C -0.11 -1.90 3.20 -27.88 -0.09 -1.99 16 10 C 0.05 1.05 1.24 -92.92 -0.12 0.93 16 11 H 0.05 1.31 5.26 -51.93 -0.27 1.03 16 12 C -0.48 -12.94 7.19 -34.44 -0.25 -13.19 16 13 H 0.07 2.08 8.05 -52.49 -0.42 1.66 16 14 C 0.08 2.43 5.47 -17.82 -0.10 2.33 16 15 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 16 Si 0.87 22.31 24.76 -169.99 -4.21 18.10 16 17 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 19 H -0.26 -6.48 5.95 56.52 0.34 -6.14 16 20 C -0.04 -0.76 4.30 -104.62 -0.45 -1.21 16 21 C -0.11 -1.94 8.94 -39.59 -0.35 -2.30 16 22 C -0.12 -1.98 10.05 -39.59 -0.40 -2.37 16 23 C -0.15 -2.35 10.05 -39.58 -0.40 -2.75 16 24 C -0.12 -2.05 10.05 -39.58 -0.40 -2.45 16 25 C -0.14 -2.74 8.15 -39.58 -0.32 -3.07 16 26 C 0.13 1.95 3.06 -68.91 -0.21 1.74 16 27 H 0.13 2.22 7.22 -51.93 -0.38 1.85 16 28 C -0.15 -1.95 9.38 37.16 0.35 -1.60 16 29 C 0.52 7.33 6.82 -11.73 -0.08 7.25 16 30 O -0.54 -9.24 16.25 5.56 0.09 -9.15 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.88 7.23 -51.93 -0.38 0.50 16 35 H 0.08 0.46 7.80 -51.93 -0.41 0.06 16 36 H 0.09 0.43 7.85 -51.93 -0.41 0.02 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.62 7.51 -51.93 -0.39 0.23 16 39 H 0.11 0.85 6.03 -51.93 -0.31 0.54 16 40 H 0.07 0.99 7.88 -51.93 -0.41 0.58 16 41 H 0.09 1.34 7.01 -51.93 -0.36 0.98 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 43 H 0.12 2.02 7.37 -52.48 -0.39 1.63 16 44 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 45 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 46 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 47 H 0.11 2.12 6.77 -52.49 -0.36 1.77 16 48 H 0.06 0.63 7.50 -51.93 -0.39 0.25 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 394.31 15.07 5.94 5.94 Total: -1.00 -35.43 394.31 -8.71 -44.15 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.87 Total: 3.52 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -2.59 Total: -7.66 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -0.15 Total: -43.33 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.17 Total: -20.72 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.21 Total: 18.10 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.43 -8.71 -44.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356900315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.639 kcal (2) G-P(sol) polarization free energy of solvation -35.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds