Wall clock time and date at job start Wed Apr 1 2020 03:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47184 * 2 1 4 4 C 1.45647 * 117.70321 * 89.99229 * 3 2 1 5 5 C 1.52993 * 110.77234 * 158.10472 * 4 3 2 6 6 N 1.47259 * 108.18784 * 46.72541 * 5 4 3 7 7 C 1.34781 * 121.35189 * 118.22616 * 6 5 4 8 8 O 1.21281 * 119.99829 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99850 * 359.97438 * 7 6 5 10 10 C 1.53005 * 109.46928 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.46580 * 55.00437 * 10 9 7 12 12 C 1.50695 * 109.47109 * 294.99887 * 10 9 7 13 13 H 1.07998 * 120.00591 * 334.72742 * 12 10 9 14 14 C 1.37884 * 119.99611 * 154.72051 * 12 10 9 15 15 N 1.31519 * 119.99563 * 184.85397 * 14 12 10 16 16 Si 1.86792 * 120.00007 * 4.86087 * 14 12 10 17 17 H 1.48494 * 109.47565 * 84.63306 * 16 14 12 18 18 H 1.48500 * 109.47169 * 204.63314 * 16 14 12 19 19 H 1.48500 * 109.47439 * 324.62935 * 16 14 12 20 20 C 1.50701 * 109.46701 * 175.00137 * 10 9 7 21 21 C 1.38232 * 120.00310 * 55.27898 * 20 10 9 22 22 C 1.38227 * 119.99963 * 179.74176 * 21 20 10 23 23 C 1.38231 * 120.00281 * 0.52693 * 22 21 20 24 24 C 1.38241 * 119.99985 * 359.74756 * 23 22 21 25 25 C 1.38235 * 119.99683 * 359.97438 * 24 23 22 26 26 C 1.47048 * 117.29800 * 298.49930 * 6 5 4 27 27 H 1.08995 * 109.57226 * 162.55465 * 26 6 5 28 28 C 1.52999 * 109.56862 * 282.91773 * 26 6 5 29 29 C 1.33380 * 117.70733 * 269.97997 * 3 2 1 30 30 O 1.21281 * 118.48675 * 4.31763 * 29 3 2 31 31 H 1.09003 * 109.46756 * 60.00276 * 1 2 3 32 32 H 1.09001 * 109.46806 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47363 * 299.99761 * 1 2 3 34 34 H 1.08995 * 109.47363 * 240.00239 * 2 1 3 35 35 H 1.09004 * 109.47268 * 119.99606 * 2 1 3 36 36 H 1.09007 * 109.21727 * 37.77245 * 4 3 2 37 37 H 1.08995 * 109.22124 * 278.43780 * 4 3 2 38 38 H 1.09004 * 109.71782 * 287.05084 * 5 4 3 39 39 H 1.08999 * 109.72063 * 166.40718 * 5 4 3 40 40 H 1.08997 * 109.47016 * 300.00227 * 9 7 6 41 41 H 1.09003 * 109.47025 * 60.00083 * 9 7 6 42 42 H 0.97000 * 119.99652 * 180.02562 * 15 14 12 43 43 H 1.08005 * 119.99669 * 359.97438 * 21 20 10 44 44 H 1.08006 * 119.99940 * 180.30025 * 22 21 20 45 45 H 1.07999 * 120.00370 * 179.76758 * 23 22 21 46 46 H 1.07996 * 120.00012 * 179.97438 * 24 23 22 47 47 H 1.07998 * 120.00039 * 179.97438 * 25 24 23 48 48 H 1.08999 * 109.47087 * 59.99536 * 28 26 6 49 49 H 1.08998 * 109.47419 * 179.97438 * 28 26 6 50 50 H 1.09002 * 109.46882 * 299.99720 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2439 2.0197 1.2895 5 6 3.2226 3.1876 1.1529 6 7 2.8116 3.9987 -0.0054 7 6 2.4439 5.2876 0.1361 8 8 2.1093 5.9328 -0.8348 9 6 2.4474 5.9267 1.5009 10 6 1.9915 7.3825 1.3835 11 1 1.0213 7.4205 0.8882 12 6 2.9985 8.1606 0.5764 13 1 4.0255 7.8296 0.5302 14 6 2.6087 9.2951 -0.1033 15 7 3.4630 9.9202 -0.8838 16 14 0.8673 9.9443 0.0845 17 1 0.7869 10.8037 1.2928 18 1 0.5041 10.7413 -1.1147 19 1 -0.0737 8.8041 0.2245 20 6 1.8770 7.9855 2.7598 21 6 2.9605 7.9604 3.6178 22 6 2.8571 8.5182 4.8783 23 6 1.6668 9.0915 5.2849 24 6 0.5814 9.1115 4.4290 25 6 0.6866 8.5588 3.1663 26 6 2.8128 3.3436 -1.3219 27 1 2.2127 3.9266 -2.0204 28 6 4.2484 3.2375 -1.8402 29 6 2.2254 1.9658 -1.1809 30 8 1.9261 1.3588 -2.1872 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.6537 1.2876 1.9855 37 1 1.2950 2.3903 1.6773 38 1 4.2313 2.8056 0.9952 39 1 3.1967 3.7968 2.0564 40 1 1.7665 5.3849 2.1574 41 1 3.4551 5.8933 1.9151 42 1 3.1889 10.7186 -1.3617 43 1 3.8891 7.5083 3.3019 44 1 3.7052 8.5030 5.5469 45 1 1.5848 9.5240 6.2711 46 1 -0.3487 9.5590 4.7468 47 1 -0.1614 8.5741 2.4978 48 1 4.8442 2.6495 -1.1422 49 1 4.2475 2.7513 -2.8158 50 1 4.6763 4.2358 -1.9318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356900315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:19 Heat of formation + Delta-G solvation = -55.849652 kcal Electronic energy + Delta-G solvation = -31258.761225 eV Core-core repulsion = 27250.230012 eV Total energy + Delta-G solvation = -4008.531213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.04535 -40.57549 -39.77055 -37.66596 -36.62018 -35.83954 -33.81886 -32.80111 -32.08069 -31.60679 -30.26103 -29.49438 -27.86060 -26.00992 -24.84395 -24.34469 -23.45922 -23.18931 -21.70196 -20.54750 -19.08690 -18.82048 -18.55761 -18.35816 -17.48911 -17.06152 -16.92870 -16.58682 -16.14734 -15.83948 -15.69531 -15.43893 -15.18442 -14.90734 -14.76692 -14.65961 -14.41677 -14.07337 -13.92354 -13.75897 -13.69323 -13.51103 -13.38212 -13.21950 -13.15910 -12.91817 -12.84693 -12.64919 -12.63632 -12.41939 -12.10913 -11.88306 -11.87697 -11.78627 -11.46157 -11.24326 -11.05604 -10.74848 -10.49214 -9.87091 -9.63639 -9.60793 -9.28829 -8.23138 -6.18421 0.68200 0.74027 1.28824 1.31729 1.36574 1.39260 1.70803 1.86151 2.00906 2.37222 3.08056 3.21044 3.32206 3.66603 3.86591 4.00590 4.04855 4.10240 4.17758 4.19077 4.29376 4.30173 4.31564 4.40394 4.43543 4.50412 4.53244 4.58196 4.61749 4.66909 4.72295 4.80533 4.84746 4.87984 4.91757 5.00348 5.04979 5.08911 5.23112 5.25979 5.34545 5.39912 5.40901 5.50740 5.70265 5.78141 5.83028 6.02250 6.26795 6.32042 6.35745 6.45282 6.80874 6.96027 7.38581 7.43710 8.93956 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012278 B = 0.003582 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.874727 B = 7814.844142 C = 8941.455438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.595 5.595 4 C 0.094 3.906 5 C 0.083 3.917 6 N -0.621 5.621 7 C 0.516 3.484 8 O -0.559 6.559 9 C -0.103 4.103 10 C 0.049 3.951 11 H 0.027 0.973 12 C -0.457 4.457 13 H 0.039 0.961 14 C 0.020 3.980 15 N -0.952 5.952 16 Si 0.916 3.084 17 H -0.259 1.259 18 H -0.304 1.304 19 H -0.254 1.254 20 C -0.060 4.060 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.141 4.141 24 C -0.125 4.125 25 C -0.163 4.163 26 C 0.128 3.872 27 H 0.086 0.914 28 C -0.140 4.140 29 C 0.518 3.482 30 O -0.583 6.583 31 H 0.023 0.977 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.120 0.880 36 H 0.136 0.864 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.132 0.868 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.257 0.743 43 H 0.123 0.877 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.134 0.866 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.073 0.927 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.535 -19.514 15.606 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.021 4.021 3 N -0.326 5.326 4 C -0.028 4.028 5 C -0.038 4.038 6 N -0.358 5.358 7 C 0.306 3.694 8 O -0.435 6.435 9 C -0.143 4.143 10 C 0.029 3.971 11 H 0.045 0.955 12 C -0.495 4.495 13 H 0.057 0.943 14 C -0.176 4.176 15 N -0.594 5.594 16 Si 0.744 3.256 17 H -0.184 1.184 18 H -0.232 1.232 19 H -0.179 1.179 20 C -0.061 4.061 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.159 4.159 24 C -0.143 4.143 25 C -0.181 4.181 26 C 0.021 3.979 27 H 0.104 0.896 28 C -0.198 4.198 29 C 0.305 3.695 30 O -0.463 6.463 31 H 0.043 0.957 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.154 0.846 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.149 0.851 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.066 0.934 43 H 0.141 0.859 44 H 0.163 0.837 45 H 0.164 0.836 46 H 0.152 0.848 47 H 0.116 0.884 48 H 0.103 0.897 49 H 0.092 0.908 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.861 -19.299 14.493 24.207 hybrid contribution -0.802 1.155 -1.288 1.906 sum -2.663 -18.145 13.205 22.599 Atomic orbital electron populations 1.22062 0.95885 1.03033 1.01126 1.21736 0.94680 0.81322 1.04372 1.47421 1.63980 1.15340 1.05866 1.22153 1.00640 0.96193 0.83829 1.22493 0.99134 0.92485 0.89689 1.48475 1.68515 1.11007 1.07834 1.21284 0.75284 0.80416 0.92434 1.90754 1.47777 1.62273 1.42710 1.21585 1.04637 0.95621 0.92431 1.18122 0.96713 0.92291 0.89957 0.95489 1.20848 0.95122 1.07782 1.25781 0.94278 1.25578 0.99690 0.97639 0.94675 1.70029 1.37163 1.20685 1.31483 0.86273 0.83187 0.78950 0.77216 1.18428 1.23203 1.17860 1.20448 0.93397 0.97065 0.95173 1.21051 0.97812 1.00834 0.93820 1.21437 0.98464 0.97718 0.96054 1.21340 0.93037 1.00987 1.00539 1.21302 1.00021 0.99500 0.93497 1.21170 0.97566 1.02013 0.97385 1.21075 0.99463 0.89784 0.87570 0.89575 1.21884 0.92849 1.02913 1.02184 1.20174 0.77791 0.87796 0.83707 1.90689 1.53358 1.64858 1.37393 0.95745 0.89683 0.91606 0.91481 0.86172 0.84616 0.90638 0.88362 0.85053 0.86952 0.87347 0.93370 0.85946 0.83723 0.83633 0.84772 0.88404 0.89678 0.90818 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 10.23 71.98 0.74 -1.85 16 2 C 0.10 1.51 5.88 86.38 0.51 2.01 16 3 N -0.59 -11.35 2.81 -826.37 -2.32 -13.67 16 4 C 0.09 1.07 6.57 86.54 0.57 1.64 16 5 C 0.08 1.25 6.31 86.23 0.54 1.79 16 6 N -0.62 -17.39 2.62 -799.24 -2.10 -19.49 16 7 C 0.52 19.57 7.47 87.66 0.65 20.23 16 8 O -0.56 -28.67 14.54 -3.03 -0.04 -28.71 16 9 C -0.10 -3.40 3.20 29.85 0.10 -3.31 16 10 C 0.05 2.15 1.24 -12.29 -0.02 2.13 16 11 H 0.03 1.34 5.26 -2.39 -0.01 1.32 16 12 C -0.46 -25.47 7.19 25.60 0.18 -25.29 16 13 H 0.04 2.37 8.05 -2.91 -0.02 2.35 16 14 C 0.02 1.24 5.47 84.66 0.46 1.70 16 15 N -0.95 -62.34 13.96 21.45 0.30 -62.05 16 16 Si 0.92 48.06 24.76 68.60 1.70 49.76 16 17 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.30 -16.33 7.11 99.48 0.71 -15.62 16 19 H -0.25 -12.74 5.95 99.48 0.59 -12.15 16 20 C -0.06 -2.33 4.30 -19.87 -0.09 -2.42 16 21 C -0.12 -3.90 8.94 22.27 0.20 -3.70 16 22 C -0.12 -3.25 10.05 22.27 0.22 -3.02 16 23 C -0.14 -3.70 10.05 22.27 0.22 -3.48 16 24 C -0.13 -3.77 10.05 22.27 0.22 -3.54 16 25 C -0.16 -6.03 8.15 22.27 0.18 -5.85 16 26 C 0.13 3.96 3.06 44.06 0.13 4.10 16 27 H 0.09 3.37 7.22 -2.39 -0.02 3.35 16 28 C -0.14 -3.76 9.38 71.98 0.68 -3.08 16 29 C 0.52 14.68 6.82 87.79 0.60 15.28 16 30 O -0.58 -20.52 16.25 -3.03 -0.05 -20.56 16 31 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 1.29 7.23 -2.39 -0.02 1.27 16 35 H 0.12 0.80 7.80 -2.39 -0.02 0.78 16 36 H 0.14 0.37 7.85 -2.38 -0.02 0.35 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.10 1.14 7.51 -2.39 -0.02 1.12 16 39 H 0.13 1.41 6.03 -2.39 -0.01 1.40 16 40 H 0.11 2.77 7.88 -2.39 -0.02 2.75 16 41 H 0.11 3.11 7.01 -2.39 -0.02 3.09 16 42 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 43 H 0.12 3.88 7.37 -2.91 -0.02 3.86 16 44 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 45 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 46 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 47 H 0.10 3.75 6.77 -2.91 -0.02 3.73 16 48 H 0.08 1.77 7.50 -2.39 -0.02 1.75 16 49 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 50 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -87.30 394.31 4.42 -82.88 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.81 Total: 18.52 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 6.12 Total: -6.68 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -4.12 Total: -95.20 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -0.09 Total: -49.27 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.70 Total: 49.76 kcal Total: -87.30 4.42 -82.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356900315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.027 kcal (2) G-P(sol) polarization free energy of solvation -87.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds