Wall clock time and date at job start Wed Apr 1 2020 03:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 119.99775 * 2 1 4 4 N 1.46504 * 109.46950 * 125.00115 * 3 2 1 5 5 C 1.46498 * 120.00233 * 86.51077 * 4 3 2 6 6 C 1.50699 * 109.47156 * 84.65231 * 5 4 3 7 7 H 1.08002 * 120.00233 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00191 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99631 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99983 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47307 * 90.00192 * 10 8 6 12 12 H 1.48500 * 109.47011 * 210.00279 * 10 8 6 13 13 H 1.48499 * 109.47159 * 329.99981 * 10 8 6 14 14 C 1.34777 * 120.00000 * 266.51153 * 4 3 2 15 15 O 1.21282 * 119.99682 * 4.20685 * 14 4 3 16 16 C 1.50695 * 120.00168 * 184.21401 * 14 4 3 17 17 H 1.09001 * 109.47076 * 38.82328 * 16 14 4 18 18 C 1.53000 * 109.46925 * 278.82755 * 16 14 4 19 19 N 1.46498 * 109.47281 * 158.82954 * 16 14 4 20 20 C 1.34780 * 120.00091 * 205.00038 * 19 16 14 21 21 O 1.21284 * 119.99582 * 359.97438 * 20 19 16 22 22 C 1.50696 * 120.00272 * 180.02562 * 20 19 16 23 23 C 1.52997 * 109.47476 * 179.97438 * 22 20 19 24 24 C 1.50696 * 109.47554 * 179.97438 * 23 22 20 25 25 C 1.38236 * 120.00291 * 269.73189 * 24 23 22 26 26 C 1.38232 * 120.00515 * 179.76329 * 25 24 23 27 27 C 1.38239 * 119.99442 * 0.50394 * 26 25 24 28 28 C 1.38239 * 120.00187 * 359.74474 * 27 26 25 29 29 C 1.38235 * 119.99919 * 0.02562 * 28 27 26 30 30 H 1.08002 * 120.00341 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00050 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.00389 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47204 * 5.00011 * 3 2 1 34 34 H 1.09000 * 109.46731 * 244.99721 * 3 2 1 35 35 H 1.09000 * 109.47068 * 204.65570 * 5 4 3 36 36 H 1.08998 * 109.46901 * 324.65661 * 5 4 3 37 37 H 0.97003 * 119.99587 * 180.02562 * 9 8 6 38 38 H 1.09005 * 109.47076 * 173.54797 * 18 16 14 39 39 H 1.09004 * 109.47318 * 293.55028 * 18 16 14 40 40 H 1.09001 * 109.47293 * 53.55111 * 18 16 14 41 41 H 0.96998 * 119.99790 * 24.99598 * 19 16 14 42 42 H 1.09006 * 109.46806 * 300.00005 * 22 20 19 43 43 H 1.08998 * 109.47349 * 59.99039 * 22 20 19 44 44 H 1.08997 * 109.46730 * 299.99755 * 23 22 20 45 45 H 1.09007 * 109.46879 * 59.99386 * 23 22 20 46 46 H 1.08005 * 119.99267 * 359.97438 * 25 24 23 47 47 H 1.07993 * 120.00750 * 180.22431 * 26 25 24 48 48 H 1.08000 * 119.99841 * 179.72512 * 27 26 25 49 49 H 1.08001 * 119.99959 * 179.97438 * 28 27 26 50 50 H 1.07997 * 120.00029 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3336 0.7563 0.9919 6 6 5.2588 1.7787 0.3838 7 1 4.8861 2.7594 0.1273 8 6 6.5814 1.4625 0.1558 9 7 7.0353 0.2685 0.4686 10 14 7.7282 2.7301 -0.5973 11 1 8.3631 3.5271 0.4830 12 1 8.7798 2.0394 -1.3861 13 1 6.9536 3.6315 -1.4875 14 6 2.6169 1.8862 2.3008 15 8 1.4833 2.2939 2.4411 16 6 3.6040 1.9994 3.4338 17 1 4.5848 2.2605 3.0363 18 6 3.6917 0.6608 4.1694 19 7 3.1614 3.0403 4.3649 20 6 4.0603 3.6743 5.1437 21 8 5.2355 3.3828 5.0739 22 6 3.6050 4.7446 6.1019 23 6 4.8133 5.2984 6.8596 24 6 4.3582 6.3691 7.8173 25 6 4.3093 7.6883 7.4070 26 6 3.8871 8.6698 8.2841 27 6 3.5237 8.3335 9.5747 28 6 3.5775 7.0150 9.9867 29 6 3.9951 6.0329 9.1081 30 1 -0.5401 -0.9353 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3585 2.1317 0.0896 34 1 2.6212 1.4026 -0.9314 35 1 4.7082 0.4655 1.9734 36 1 4.2868 -0.1207 0.3464 37 1 7.9659 0.0462 0.3086 38 1 4.4863 0.7068 4.9142 39 1 2.7421 0.4548 4.6635 40 1 3.9091 -0.1330 3.4548 41 1 2.2215 3.2731 4.4208 42 1 3.1242 5.5494 5.5458 43 1 2.8955 4.3190 6.8115 44 1 5.2936 4.4934 7.4156 45 1 5.5232 5.7239 6.1501 46 1 4.5977 7.9515 6.4001 47 1 3.8454 9.6999 7.9624 48 1 3.1981 9.1009 10.2613 49 1 3.2939 6.7524 10.9952 50 1 4.0376 5.0029 9.4301 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359382047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:50 Heat of formation + Delta-G solvation = -39.513673 kcal Electronic energy + Delta-G solvation = -29583.506653 eV Core-core repulsion = 25575.683821 eV Total energy + Delta-G solvation = -4007.822832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.10218 -39.47739 -38.72522 -35.69936 -34.73527 -34.01682 -33.45216 -32.24255 -31.07364 -30.79781 -29.30606 -27.47540 -26.00287 -25.05048 -23.49578 -22.75374 -22.57560 -21.11941 -20.02623 -19.70759 -18.65200 -17.39778 -16.83804 -16.60814 -16.26835 -15.84580 -15.72319 -15.19231 -14.98984 -14.90319 -14.62498 -14.35211 -14.02621 -13.74997 -13.58740 -13.32806 -13.18499 -13.04910 -12.79037 -12.72943 -12.46187 -12.08208 -11.97087 -11.88286 -11.59516 -11.43234 -11.25356 -11.16879 -11.14620 -11.03694 -10.92863 -10.80933 -10.72342 -10.16393 -9.78004 -9.64290 -9.37615 -9.11315 -9.05589 -8.86168 -8.74246 -8.54824 -7.85461 -6.19758 -4.27377 1.15676 1.20966 2.51666 2.86949 3.10221 3.25515 3.32474 3.34686 3.38311 3.62197 4.01745 4.34342 4.60188 4.67017 4.80737 4.90753 4.97948 5.05395 5.09622 5.15642 5.23169 5.29199 5.35915 5.36066 5.50959 5.54462 5.60334 5.70421 5.73061 5.81090 5.89139 5.92201 6.04191 6.11489 6.13374 6.27653 6.28345 6.31796 6.32430 6.45557 6.49542 6.62929 6.70317 6.82307 6.89101 7.07471 7.14164 7.40460 7.73210 7.79438 8.00380 8.19915 8.50174 8.69925 8.85626 9.41040 10.87251 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.002628 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.322154 B =10650.373744 C =12390.500247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.157 4.157 3 C 0.143 3.857 4 N -0.584 5.584 5 C 0.228 3.772 6 C -0.543 4.543 7 H 0.061 0.939 8 C 0.068 3.932 9 N -0.888 5.888 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.515 3.485 15 O -0.573 6.573 16 C 0.124 3.876 17 H 0.129 0.871 18 C -0.153 4.153 19 N -0.713 5.713 20 C 0.510 3.490 21 O -0.534 6.534 22 C -0.131 4.131 23 C -0.067 4.067 24 C -0.078 4.078 25 C -0.116 4.116 26 C -0.119 4.119 27 C -0.128 4.128 28 C -0.120 4.120 29 C -0.117 4.117 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.038 0.962 37 H 0.266 0.734 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.405 0.595 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.929 8.617 13.254 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.176 4.176 3 C 0.020 3.980 4 N -0.313 5.313 5 C 0.108 3.892 6 C -0.581 4.581 7 H 0.079 0.921 8 C -0.135 4.135 9 N -0.526 5.526 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.302 3.698 15 O -0.454 6.454 16 C 0.017 3.983 17 H 0.147 0.853 18 C -0.212 4.212 19 N -0.367 5.367 20 C 0.296 3.704 21 O -0.410 6.410 22 C -0.172 4.172 23 C -0.105 4.105 24 C -0.078 4.078 25 C -0.134 4.134 26 C -0.137 4.137 27 C -0.146 4.146 28 C -0.138 4.138 29 C -0.135 4.135 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.241 0.759 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.457 8.478 13.227 17.842 hybrid contribution 0.308 0.632 -0.501 0.864 sum -8.150 9.110 12.725 17.645 Atomic orbital electron populations 1.23733 0.95843 1.01327 1.01805 1.23392 0.96095 0.99411 0.98736 1.20441 0.92246 0.94906 0.90359 1.48159 1.16433 1.56608 1.10100 1.19668 0.76137 0.94398 0.98967 1.21422 0.94337 0.99616 1.42736 0.92106 1.24917 0.97993 0.95478 0.95151 1.69907 1.16019 1.19667 1.46999 0.86512 0.80436 0.81340 0.79344 1.20272 1.21039 1.19825 1.20418 0.87836 0.77452 0.84049 1.90569 1.20796 1.51442 1.82599 1.20845 0.99891 0.89123 0.88457 0.85324 1.22086 1.02076 0.95799 1.01242 1.45842 1.11510 1.38936 1.40378 1.20613 0.86122 0.82383 0.81240 1.90753 1.17074 1.65458 1.67757 1.21613 0.99681 0.97774 0.98087 1.20363 0.96693 0.96529 0.96902 1.19979 0.98522 0.94579 0.94724 1.21140 0.99900 0.92512 0.99885 1.21155 0.99324 0.99319 0.93941 1.21139 1.00778 0.96420 0.96299 1.21146 0.99932 0.93167 0.99562 1.21111 0.99494 0.99551 0.93335 0.88978 0.88696 0.87405 0.90466 0.89305 0.93408 0.94425 0.92424 0.91226 0.92632 0.90379 0.75919 0.88827 0.88887 0.89993 0.89922 0.85910 0.86175 0.86341 0.86204 0.85977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.67 14.32 29.02 0.42 -2.26 16 2 C -0.16 -2.52 9.85 -36.02 -0.35 -2.88 16 3 C 0.14 2.60 5.87 -5.19 -0.03 2.57 16 4 N -0.58 -11.93 2.44 -176.43 -0.43 -12.36 16 5 C 0.23 5.26 4.72 -5.20 -0.02 5.24 16 6 C -0.54 -14.01 9.07 -34.44 -0.31 -14.33 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -24.45 13.29 55.43 0.74 -23.71 16 10 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 C 0.52 10.31 6.91 -10.99 -0.08 10.24 16 15 O -0.57 -11.84 15.51 5.56 0.09 -11.76 16 16 C 0.12 2.34 2.13 -69.09 -0.15 2.19 16 17 H 0.13 2.87 6.41 -51.93 -0.33 2.54 16 18 C -0.15 -2.61 9.10 37.16 0.34 -2.27 16 19 N -0.71 -11.40 5.04 -54.94 -0.28 -11.68 16 20 C 0.51 7.99 7.79 -10.99 -0.09 7.91 16 21 O -0.53 -10.53 15.65 5.55 0.09 -10.44 16 22 C -0.13 -1.47 5.68 -27.89 -0.16 -1.63 16 23 C -0.07 -0.76 4.63 -27.89 -0.13 -0.89 16 24 C -0.08 -0.80 5.13 -104.63 -0.54 -1.34 16 25 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 26 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 27 C -0.13 -1.08 10.05 -39.58 -0.40 -1.47 16 28 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 29 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 30 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.09 1.31 7.84 -52.49 -0.41 0.90 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.08 1.39 7.03 -51.93 -0.37 1.02 16 34 H 0.09 1.61 8.10 -51.93 -0.42 1.18 16 35 H 0.05 1.14 4.66 -51.93 -0.24 0.89 16 36 H 0.04 0.91 8.11 -51.93 -0.42 0.49 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.37 6.38 -51.93 -0.33 1.04 16 41 H 0.40 5.83 7.75 -40.82 -0.32 5.52 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.96 8.04 -51.93 -0.42 0.55 16 45 H 0.08 1.02 8.04 -51.92 -0.42 0.61 16 46 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 47 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 48 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 49 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 50 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 420.45 15.07 6.34 6.34 Total: -1.00 -30.45 420.45 -9.52 -39.97 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -7.87 Total: 10.87 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -3.16 Total: -3.09 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.03 Total: -47.75 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.17 Total: -22.20 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -30.45 -9.52 -39.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359382047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.451 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds