Wall clock time and date at job start Wed Apr 1 2020 03:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 119.99775 * 2 1 4 4 N 1.46504 * 109.46950 * 125.00115 * 3 2 1 5 5 C 1.46498 * 120.00233 * 86.51077 * 4 3 2 6 6 C 1.50699 * 109.47156 * 84.65231 * 5 4 3 7 7 H 1.08002 * 120.00233 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00191 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99631 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99983 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47307 * 90.00192 * 10 8 6 12 12 H 1.48500 * 109.47011 * 210.00279 * 10 8 6 13 13 H 1.48499 * 109.47159 * 329.99981 * 10 8 6 14 14 C 1.34777 * 120.00000 * 266.51153 * 4 3 2 15 15 O 1.21282 * 119.99682 * 4.20685 * 14 4 3 16 16 C 1.50695 * 120.00168 * 184.21401 * 14 4 3 17 17 H 1.09001 * 109.47076 * 38.82328 * 16 14 4 18 18 C 1.53000 * 109.46925 * 278.82755 * 16 14 4 19 19 N 1.46498 * 109.47281 * 158.82954 * 16 14 4 20 20 C 1.34780 * 120.00091 * 205.00038 * 19 16 14 21 21 O 1.21284 * 119.99582 * 359.97438 * 20 19 16 22 22 C 1.50696 * 120.00272 * 180.02562 * 20 19 16 23 23 C 1.52997 * 109.47476 * 179.97438 * 22 20 19 24 24 C 1.50696 * 109.47554 * 179.97438 * 23 22 20 25 25 C 1.38236 * 120.00291 * 269.73189 * 24 23 22 26 26 C 1.38232 * 120.00515 * 179.76329 * 25 24 23 27 27 C 1.38239 * 119.99442 * 0.50394 * 26 25 24 28 28 C 1.38239 * 120.00187 * 359.74474 * 27 26 25 29 29 C 1.38235 * 119.99919 * 0.02562 * 28 27 26 30 30 H 1.08002 * 120.00341 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00050 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.00389 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47204 * 5.00011 * 3 2 1 34 34 H 1.09000 * 109.46731 * 244.99721 * 3 2 1 35 35 H 1.09000 * 109.47068 * 204.65570 * 5 4 3 36 36 H 1.08998 * 109.46901 * 324.65661 * 5 4 3 37 37 H 0.97003 * 119.99587 * 180.02562 * 9 8 6 38 38 H 1.09005 * 109.47076 * 173.54797 * 18 16 14 39 39 H 1.09004 * 109.47318 * 293.55028 * 18 16 14 40 40 H 1.09001 * 109.47293 * 53.55111 * 18 16 14 41 41 H 0.96998 * 119.99790 * 24.99598 * 19 16 14 42 42 H 1.09006 * 109.46806 * 300.00005 * 22 20 19 43 43 H 1.08998 * 109.47349 * 59.99039 * 22 20 19 44 44 H 1.08997 * 109.46730 * 299.99755 * 23 22 20 45 45 H 1.09007 * 109.46879 * 59.99386 * 23 22 20 46 46 H 1.08005 * 119.99267 * 359.97438 * 25 24 23 47 47 H 1.07993 * 120.00750 * 180.22431 * 26 25 24 48 48 H 1.08000 * 119.99841 * 179.72512 * 27 26 25 49 49 H 1.08001 * 119.99959 * 179.97438 * 28 27 26 50 50 H 1.07997 * 120.00029 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3336 0.7563 0.9919 6 6 5.2588 1.7787 0.3838 7 1 4.8861 2.7594 0.1273 8 6 6.5814 1.4625 0.1558 9 7 7.0353 0.2685 0.4686 10 14 7.7282 2.7301 -0.5973 11 1 8.3631 3.5271 0.4830 12 1 8.7798 2.0394 -1.3861 13 1 6.9536 3.6315 -1.4875 14 6 2.6169 1.8862 2.3008 15 8 1.4833 2.2939 2.4411 16 6 3.6040 1.9994 3.4338 17 1 4.5848 2.2605 3.0363 18 6 3.6917 0.6608 4.1694 19 7 3.1614 3.0403 4.3649 20 6 4.0603 3.6743 5.1437 21 8 5.2355 3.3828 5.0739 22 6 3.6050 4.7446 6.1019 23 6 4.8133 5.2984 6.8596 24 6 4.3582 6.3691 7.8173 25 6 4.3093 7.6883 7.4070 26 6 3.8871 8.6698 8.2841 27 6 3.5237 8.3335 9.5747 28 6 3.5775 7.0150 9.9867 29 6 3.9951 6.0329 9.1081 30 1 -0.5401 -0.9353 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3585 2.1317 0.0896 34 1 2.6212 1.4026 -0.9314 35 1 4.7082 0.4655 1.9734 36 1 4.2868 -0.1207 0.3464 37 1 7.9659 0.0462 0.3086 38 1 4.4863 0.7068 4.9142 39 1 2.7421 0.4548 4.6635 40 1 3.9091 -0.1330 3.4548 41 1 2.2215 3.2731 4.4208 42 1 3.1242 5.5494 5.5458 43 1 2.8955 4.3190 6.8115 44 1 5.2936 4.4934 7.4156 45 1 5.5232 5.7239 6.1501 46 1 4.5977 7.9515 6.4001 47 1 3.8454 9.6999 7.9624 48 1 3.1981 9.1009 10.2613 49 1 3.2939 6.7524 10.9952 50 1 4.0376 5.0029 9.4301 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359382047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:49 Heat of formation + Delta-G solvation = -55.269359 kcal Electronic energy + Delta-G solvation = -29584.189871 eV Core-core repulsion = 25575.683821 eV Total energy + Delta-G solvation = -4008.506050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.53928 -40.51071 -39.87974 -37.26357 -36.19300 -35.07910 -34.96339 -33.97540 -32.04802 -31.73065 -30.26487 -29.35509 -27.47714 -26.13114 -25.15838 -24.09525 -23.41696 -21.96939 -21.26284 -21.02689 -20.15392 -18.76428 -18.53609 -17.85653 -17.63978 -17.10114 -16.83635 -16.56292 -16.28122 -16.15256 -15.81933 -15.77881 -15.35092 -15.02380 -14.71899 -14.41200 -14.26417 -14.24338 -14.03667 -13.94527 -13.73979 -13.55015 -13.43521 -13.19598 -13.06774 -12.79243 -12.76423 -12.61772 -12.52750 -12.22530 -12.19802 -12.01484 -11.87643 -11.71434 -11.69534 -10.99086 -10.91357 -10.61725 -10.35293 -10.14160 -9.78348 -9.58251 -9.55679 -8.23964 -6.37439 0.46212 0.53852 1.27222 1.37549 1.40321 1.46560 1.50602 1.66919 2.01726 2.35647 2.55175 2.92293 3.07573 3.49365 3.66057 3.94270 4.01742 4.02791 4.10061 4.18833 4.21735 4.22658 4.26323 4.29431 4.37063 4.52414 4.58893 4.64333 4.66047 4.70077 4.78591 4.81532 4.85328 4.96020 5.01582 5.06177 5.08747 5.19765 5.22504 5.23986 5.36112 5.60074 5.61832 5.66677 5.68570 5.72127 5.76861 5.85648 6.01011 6.16360 6.47341 6.52885 6.74250 7.12895 7.25075 7.34776 8.81865 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.002628 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.322154 B =10650.373744 C =12390.500247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.182 4.182 3 C 0.142 3.858 4 N -0.587 5.587 5 C 0.244 3.756 6 C -0.549 4.549 7 H 0.051 0.949 8 C 0.024 3.976 9 N -0.916 5.916 10 Si 0.951 3.049 11 H -0.282 1.282 12 H -0.277 1.277 13 H -0.267 1.267 14 C 0.516 3.484 15 O -0.577 6.577 16 C 0.129 3.871 17 H 0.090 0.910 18 C -0.144 4.144 19 N -0.706 5.706 20 C 0.509 3.491 21 O -0.579 6.579 22 C -0.118 4.118 23 C -0.061 4.061 24 C -0.090 4.090 25 C -0.131 4.131 26 C -0.126 4.126 27 C -0.131 4.131 28 C -0.125 4.125 29 C -0.127 4.127 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.040 0.960 36 H 0.026 0.974 37 H 0.268 0.732 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.415 0.585 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.124 0.876 47 H 0.138 0.862 48 H 0.141 0.859 49 H 0.141 0.859 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.778 9.717 14.361 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.201 4.201 3 C 0.020 3.980 4 N -0.316 5.316 5 C 0.123 3.877 6 C -0.588 4.588 7 H 0.069 0.931 8 C -0.177 4.177 9 N -0.554 5.554 10 Si 0.777 3.223 11 H -0.208 1.208 12 H -0.202 1.202 13 H -0.192 1.192 14 C 0.303 3.697 15 O -0.458 6.458 16 C 0.020 3.980 17 H 0.108 0.892 18 C -0.202 4.202 19 N -0.360 5.360 20 C 0.297 3.703 21 O -0.459 6.459 22 C -0.158 4.158 23 C -0.099 4.099 24 C -0.090 4.090 25 C -0.149 4.149 26 C -0.144 4.144 27 C -0.149 4.149 28 C -0.143 4.143 29 C -0.145 4.145 30 H 0.136 0.864 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.253 0.747 42 H 0.129 0.871 43 H 0.138 0.862 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.142 0.858 47 H 0.156 0.844 48 H 0.159 0.841 49 H 0.159 0.841 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.353 9.590 14.327 20.110 hybrid contribution 0.800 0.329 -0.821 1.193 sum -9.553 9.919 13.506 19.289 Atomic orbital electron populations 1.23971 0.95027 1.02781 0.98208 1.23214 0.96790 0.98126 1.02010 1.20537 0.91889 0.96381 0.89219 1.48136 1.15855 1.56585 1.11060 1.19286 0.77147 0.93356 0.97881 1.21639 0.95039 0.99652 1.42453 0.93066 1.25603 0.99380 0.97056 0.95697 1.69985 1.16394 1.21008 1.48049 0.85654 0.78825 0.79329 0.78525 1.20764 1.20168 1.19185 1.20550 0.87942 0.77102 0.84093 1.90552 1.20936 1.51666 1.82693 1.20600 0.97701 0.90748 0.88946 0.89204 1.21994 1.03084 0.94437 1.00733 1.45808 1.12158 1.38364 1.39719 1.21436 0.85323 0.82467 0.81063 1.90735 1.19087 1.66922 1.69138 1.21621 1.00094 0.96573 0.97508 1.20242 0.96356 0.96599 0.96698 1.19892 0.99747 0.94373 0.94994 1.21288 1.00467 0.92721 1.00435 1.21426 0.98894 0.99999 0.94107 1.21486 0.99938 0.97029 0.96471 1.21453 0.99303 0.93104 1.00399 1.21298 0.99557 1.00461 0.93136 0.86410 0.88201 0.87614 0.90323 0.90034 0.94202 0.95633 0.92291 0.91529 0.90465 0.91358 0.74677 0.87133 0.86171 0.90926 0.91744 0.85770 0.84444 0.84088 0.84103 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 14.32 67.78 0.97 -3.22 16 2 C -0.18 -5.69 9.85 25.65 0.25 -5.44 16 3 C 0.14 5.14 5.87 85.63 0.50 5.65 16 4 N -0.59 -24.36 2.44 -830.50 -2.03 -26.39 16 5 C 0.24 11.64 4.72 85.63 0.40 12.04 16 6 C -0.55 -29.11 9.07 25.60 0.23 -28.87 16 7 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 8 C 0.02 1.27 5.46 84.66 0.46 1.73 16 9 N -0.92 -51.39 13.29 21.45 0.28 -51.11 16 10 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 14 C 0.52 20.67 6.91 87.66 0.61 21.28 16 15 O -0.58 -23.26 15.51 -3.04 -0.05 -23.30 16 16 C 0.13 4.93 2.13 44.24 0.09 5.02 16 17 H 0.09 4.20 6.41 -2.39 -0.02 4.19 16 18 C -0.14 -4.93 9.10 71.98 0.65 -4.27 16 19 N -0.71 -22.39 5.04 -446.10 -2.25 -24.64 16 20 C 0.51 15.97 7.79 87.66 0.68 16.65 16 21 O -0.58 -23.66 15.65 -3.04 -0.05 -23.70 16 22 C -0.12 -2.52 5.68 29.85 0.17 -2.35 16 23 C -0.06 -1.38 4.63 29.85 0.14 -1.24 16 24 C -0.09 -1.78 5.13 -19.87 -0.10 -1.88 16 25 C -0.13 -2.46 9.70 22.27 0.22 -2.24 16 26 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 27 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 28 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 29 C -0.13 -2.20 9.70 22.27 0.22 -1.98 16 30 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.10 2.50 7.84 -2.91 -0.02 2.48 16 32 H 0.11 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.08 2.79 7.03 -2.39 -0.02 2.77 16 34 H 0.08 3.01 8.10 -2.39 -0.02 2.99 16 35 H 0.04 1.98 4.66 -2.39 -0.01 1.96 16 36 H 0.03 1.28 8.11 -2.39 -0.02 1.26 16 37 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 38 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.07 2.46 6.38 -2.39 -0.02 2.44 16 41 H 0.42 11.43 7.75 -92.71 -0.72 10.71 16 42 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.07 1.75 8.04 -2.39 -0.02 1.73 16 45 H 0.06 1.66 8.04 -2.38 -0.02 1.64 16 46 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 47 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 48 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 49 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 50 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -66.10 420.45 4.32 -61.78 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: 0.21 Total: 36.15 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 6.17 Total: 5.80 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -3.99 Total: -102.13 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -0.09 Total: -47.01 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -66.10 4.32 -61.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359382047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.515 kcal (2) G-P(sol) polarization free energy of solvation -66.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds