Wall clock time and date at job start Wed Apr 1 2020 03:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47332 * 2 1 4 4 C 1.50699 * 109.47236 * 239.99567 * 2 1 3 5 5 O 1.21287 * 119.99921 * 267.24291 * 4 2 1 6 6 N 1.34774 * 119.99941 * 87.24386 * 4 2 1 7 7 C 1.46501 * 119.99800 * 184.84407 * 6 4 2 8 8 C 1.46501 * 119.99972 * 4.83668 * 6 4 2 9 9 C 1.50691 * 109.47565 * 270.00250 * 8 6 4 10 10 H 1.08001 * 119.99960 * 359.97438 * 9 8 6 11 11 C 1.37873 * 120.00410 * 179.97438 * 9 8 6 12 12 N 1.31517 * 120.00271 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99714 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47006 * 90.00061 * 13 11 9 15 15 H 1.48493 * 109.47087 * 209.99810 * 13 11 9 16 16 H 1.48491 * 109.47201 * 330.00215 * 13 11 9 17 17 N 1.46897 * 109.46984 * 119.99977 * 2 1 3 18 18 C 1.46448 * 111.00078 * 299.23848 * 17 2 1 19 19 C 1.50489 * 111.38741 * 291.52737 * 18 17 2 20 20 C 1.38667 * 119.05566 * 158.81028 * 19 18 17 21 21 C 1.37970 * 120.33534 * 179.33486 * 20 19 18 22 22 C 1.38765 * 120.00916 * 0.07018 * 21 20 19 23 23 O 1.35903 * 120.15389 * 180.15486 * 22 21 20 24 24 C 1.38694 * 119.68534 * 0.12202 * 22 21 20 25 25 C 1.38149 * 120.02910 * 359.97438 * 24 22 21 26 26 C 1.50797 * 119.71665 * 179.72757 * 25 24 22 27 27 C 1.52723 * 117.93105 * 312.59166 * 26 25 24 28 28 C 1.52671 * 118.03522 * 21.75062 * 26 25 24 29 29 C 1.47330 * 111.00462 * 175.22126 * 17 2 1 30 30 H 1.08996 * 109.47229 * 187.14366 * 1 2 3 31 31 H 1.08997 * 109.46983 * 307.14861 * 1 2 3 32 32 H 1.09003 * 109.46581 * 67.14363 * 1 2 3 33 33 H 1.09005 * 109.47236 * 84.81665 * 7 6 4 34 34 H 1.09000 * 109.46861 * 204.81186 * 7 6 4 35 35 H 1.08990 * 109.47279 * 324.81432 * 7 6 4 36 36 H 1.09002 * 109.47027 * 30.00864 * 8 6 4 37 37 H 1.09003 * 109.46453 * 150.00102 * 8 6 4 38 38 H 0.97001 * 119.99515 * 180.02562 * 12 11 9 39 39 H 1.09003 * 109.09614 * 52.02709 * 18 17 2 40 40 H 1.09001 * 109.10121 * 171.04880 * 18 17 2 41 41 H 1.08000 * 119.83048 * 359.35824 * 20 19 18 42 42 H 1.07997 * 119.99289 * 180.02562 * 21 20 19 43 43 H 0.96702 * 113.99131 * 90.00815 * 23 22 21 44 44 H 1.07997 * 119.98541 * 179.97438 * 24 22 21 45 45 H 1.08999 * 117.51152 * 215.47244 * 27 26 25 46 46 H 1.08997 * 117.50613 * 0.54501 * 27 26 25 47 47 H 1.08999 * 117.50597 * 359.63545 * 28 26 25 48 48 H 1.09003 * 117.50859 * 144.69425 * 28 26 25 49 49 H 1.08998 * 109.82167 * 176.60412 * 29 17 2 50 50 H 1.08999 * 109.81397 * 297.51124 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.2822 -1.8965 -1.1863 6 7 2.2041 -0.0279 -2.3798 7 6 2.5902 -0.7372 -3.6021 8 6 2.0045 1.4232 -2.4068 9 6 0.5657 1.7264 -2.7362 10 1 -0.1305 0.9189 -2.9086 11 6 0.1379 3.0345 -2.8174 12 7 -1.1180 3.2991 -3.1044 13 14 1.3422 4.4312 -2.5198 14 1 1.9769 4.8198 -3.8049 15 1 0.6180 5.5970 -1.9531 16 1 2.3892 3.9870 -1.5651 17 7 2.0196 -0.6925 1.1994 18 6 1.5650 -0.0180 2.4172 19 6 2.2221 1.3262 2.5780 20 6 1.6197 2.2779 3.3869 21 6 2.2062 3.5141 3.5639 22 6 3.4043 3.8110 2.9299 23 8 3.9863 5.0266 3.1047 24 6 4.0054 2.8610 2.1175 25 6 3.4120 1.6258 1.9427 26 6 4.0685 0.6003 1.0530 27 6 4.5534 1.0525 -0.3228 28 6 5.5647 0.7379 0.7823 29 6 3.4879 -0.8122 1.1777 30 1 -0.3633 -1.0196 0.1278 31 1 -0.3633 0.6206 0.8191 32 1 -0.3632 0.3992 -0.9470 33 1 1.6991 -1.1333 -4.0892 34 1 3.0972 -0.0479 -4.2773 35 1 3.2613 -1.5579 -3.3494 36 1 2.2499 1.8419 -1.4308 37 1 2.6517 1.8647 -3.1647 38 1 -1.4188 4.2196 -3.1619 39 1 0.4844 0.1168 2.3680 40 1 1.8069 -0.6385 3.2801 41 1 0.6868 2.0501 3.8811 42 1 1.7325 4.2510 4.1954 43 1 4.6004 5.0649 3.8506 44 1 4.9376 3.0871 1.6214 45 1 4.4688 0.3420 -1.1450 46 1 4.4079 2.0994 -0.5888 47 1 6.0845 1.5779 1.2430 48 1 6.1455 -0.1796 0.6868 49 1 3.8348 -1.2739 2.1021 50 1 3.7968 -1.4154 0.3240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361568848.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:16 Heat of formation + Delta-G solvation = -22.273894 kcal Electronic energy + Delta-G solvation = -33107.057612 eV Core-core repulsion = 29099.982353 eV Total energy + Delta-G solvation = -4007.075259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.30436 -40.68287 -39.30735 -37.54204 -37.02839 -36.69653 -34.52263 -32.73866 -31.64356 -30.95130 -30.22773 -28.48569 -27.62857 -25.74405 -24.59560 -24.27989 -23.81475 -23.12853 -22.05677 -20.74136 -19.60842 -19.12594 -18.66956 -18.24588 -17.44343 -17.25317 -16.99863 -16.66475 -16.20263 -15.98249 -15.84729 -15.38302 -15.32194 -15.09398 -14.94302 -14.55477 -14.46601 -14.05633 -13.83305 -13.70032 -13.48381 -13.30882 -13.19369 -13.16057 -13.04230 -13.02301 -12.76671 -12.57642 -12.50152 -12.47139 -12.23005 -12.11623 -12.01760 -11.72320 -11.60598 -11.31963 -11.16469 -10.81079 -10.52194 -9.72969 -9.42215 -9.31156 -9.28402 -8.31625 -6.35169 0.18767 0.30102 1.30121 1.35609 1.40561 1.72604 2.20386 2.28359 2.44372 2.83648 3.02226 3.09320 3.21081 3.50377 3.57136 3.68872 3.76889 3.89117 3.92010 4.09611 4.21938 4.24884 4.32130 4.40001 4.47403 4.50165 4.60567 4.62966 4.65534 4.69058 4.71682 4.75718 4.80264 4.84327 4.88867 4.91255 4.93523 4.95553 5.01209 5.09772 5.13713 5.32424 5.36133 5.41507 5.43405 5.55571 5.67027 5.85176 5.92379 6.10020 6.18049 6.58573 6.69944 6.82798 7.25146 7.36850 8.83922 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008860 B = 0.006253 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.555771 B = 4477.102015 C = 5805.944919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.081 3.919 3 H 0.063 0.937 4 C 0.527 3.473 5 O -0.575 6.575 6 N -0.599 5.599 7 C 0.091 3.909 8 C 0.220 3.780 9 C -0.528 4.528 10 H 0.042 0.958 11 C 0.031 3.969 12 N -0.934 5.934 13 Si 0.922 3.078 14 H -0.261 1.261 15 H -0.288 1.288 16 H -0.251 1.251 17 N -0.513 5.513 18 C 0.091 3.909 19 C -0.130 4.130 20 C -0.095 4.095 21 C -0.155 4.155 22 C 0.097 3.903 23 O -0.509 6.509 24 C -0.156 4.156 25 C -0.033 4.033 26 C -0.136 4.136 27 C -0.175 4.175 28 C -0.134 4.134 29 C 0.090 3.910 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.267 0.733 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.152 0.848 42 H 0.145 0.855 43 H 0.409 0.591 44 H 0.131 0.869 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.110 0.890 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.827 -1.169 14.785 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 H 0.081 0.919 4 C 0.316 3.684 5 O -0.456 6.456 6 N -0.330 5.330 7 C -0.052 4.052 8 C 0.098 3.902 9 C -0.566 4.566 10 H 0.060 0.940 11 C -0.169 4.169 12 N -0.574 5.574 13 Si 0.746 3.254 14 H -0.186 1.186 15 H -0.213 1.213 16 H -0.175 1.175 17 N -0.235 5.235 18 C -0.037 4.037 19 C -0.132 4.132 20 C -0.113 4.113 21 C -0.173 4.173 22 C 0.053 3.947 23 O -0.322 6.322 24 C -0.174 4.174 25 C -0.033 4.033 26 C -0.138 4.138 27 C -0.212 4.212 28 C -0.171 4.171 29 C -0.037 4.037 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.130 0.870 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.268 0.732 44 H 0.149 0.851 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.128 0.872 48 H 0.133 0.867 49 H 0.118 0.882 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.292 -1.988 14.250 18.924 hybrid contribution 0.443 1.809 -0.146 1.868 sum 12.735 -0.179 14.104 19.004 Atomic orbital electron populations 1.21789 0.92277 1.02043 1.03549 1.21390 0.96954 0.96139 0.88478 0.91932 1.20464 0.76380 0.86622 0.84959 1.90565 1.53034 1.16356 1.85635 1.47869 1.66691 1.09206 1.09232 1.21597 0.99843 0.97585 0.86156 1.19669 0.95570 0.77199 0.97790 1.21438 0.94640 0.92578 1.47956 0.94022 1.25524 0.96283 1.00824 0.94236 1.70015 1.17082 1.20517 1.49739 0.86099 0.80072 0.79519 0.79727 1.18624 1.21346 1.17489 1.62232 1.10908 1.49493 1.00826 1.21221 1.00272 0.89493 0.92712 1.20647 0.95290 0.98643 0.98594 1.21204 1.00239 0.92218 0.97673 1.21593 0.96367 0.97786 1.01556 1.18515 0.93751 0.84842 0.97579 1.84798 1.63232 1.28177 1.56001 1.21292 1.01713 0.92862 1.01554 1.18722 0.94470 0.93534 0.96570 1.20907 0.98468 0.96657 0.97742 1.23080 1.04956 1.01582 0.91597 1.23086 0.89496 1.04339 1.00165 1.22008 0.85973 0.92096 1.03668 0.92088 0.90814 0.91902 0.94083 0.89552 0.90990 0.94320 0.94240 0.92377 0.88538 0.86964 0.83066 0.83696 0.73209 0.85126 0.89391 0.89861 0.87172 0.86725 0.88196 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 8.75 71.98 0.63 -4.74 16 2 C 0.08 3.03 1.19 44.17 0.05 3.09 16 3 H 0.06 2.52 3.51 -2.39 -0.01 2.51 16 4 C 0.53 21.51 4.45 87.66 0.39 21.90 16 5 O -0.58 -25.30 14.76 -3.05 -0.05 -25.34 16 6 N -0.60 -24.24 2.42 -851.14 -2.06 -26.29 16 7 C 0.09 3.17 10.46 127.77 1.34 4.51 16 8 C 0.22 9.57 3.76 85.63 0.32 9.89 16 9 C -0.53 -27.71 8.26 25.60 0.21 -27.50 16 10 H 0.04 2.49 7.39 -2.91 -0.02 2.47 16 11 C 0.03 1.68 5.47 84.65 0.46 2.14 16 12 N -0.93 -54.93 13.96 21.45 0.30 -54.63 16 13 Si 0.92 41.57 27.47 68.60 1.88 43.46 16 14 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 15 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 16 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 17 N -0.51 -16.15 4.58 -879.92 -4.03 -20.18 16 18 C 0.09 2.30 5.35 85.58 0.46 2.76 16 19 C -0.13 -3.43 5.22 -19.84 -0.10 -3.53 16 20 C -0.09 -2.20 9.66 22.31 0.22 -1.98 16 21 C -0.15 -3.58 9.98 22.33 0.22 -3.36 16 22 C 0.10 2.45 6.71 22.50 0.15 2.60 16 23 O -0.51 -11.10 13.51 -92.46 -1.25 -12.35 16 24 C -0.16 -4.13 8.92 22.36 0.20 -3.93 16 25 C -0.03 -0.91 4.90 -19.87 -0.10 -1.00 16 26 C -0.14 -3.70 1.35 -53.02 -0.07 -3.77 16 27 C -0.18 -5.04 7.18 30.52 0.22 -4.82 16 28 C -0.13 -2.92 9.56 30.51 0.29 -2.63 16 29 C 0.09 2.59 5.24 86.30 0.45 3.05 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.07 2.53 6.64 -2.39 -0.02 2.51 16 32 H 0.06 2.91 5.53 -2.39 -0.01 2.90 16 33 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.09 2.61 7.83 -2.39 -0.02 2.59 16 35 H 0.07 2.35 7.52 -2.39 -0.02 2.33 16 36 H 0.04 1.71 3.92 -2.39 -0.01 1.70 16 37 H 0.04 1.64 7.29 -2.39 -0.02 1.62 16 38 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.10 2.38 6.02 -2.39 -0.01 2.37 16 40 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 42 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 43 H 0.41 4.31 9.06 -74.06 -0.67 3.64 16 44 H 0.13 3.20 6.47 -2.91 -0.02 3.18 16 45 H 0.09 2.78 6.87 -2.39 -0.02 2.76 16 46 H 0.08 2.61 7.91 -2.39 -0.02 2.59 16 47 H 0.11 2.08 6.66 -2.39 -0.02 2.06 16 48 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 49 H 0.10 2.43 8.12 -2.39 -0.02 2.41 16 50 H 0.08 2.51 6.00 -2.39 -0.01 2.49 16 Total: -1.00 -68.45 377.62 0.40 -68.05 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: 0.26 Total: 34.64 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.34 Total: -7.34 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -5.79 Total: -101.11 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -1.29 Total: -37.70 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.88 Total: 43.46 kcal Total: -68.45 0.40 -68.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361568848.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.780 kcal (2) G-P(sol) polarization free energy of solvation -68.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds