Wall clock time and date at job start Wed Apr 1 2020 04:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 N 1.46901 * 109.47326 * 2 1 4 4 C 1.46905 * 110.99596 * 296.69035 * 3 2 1 5 5 C 1.53007 * 109.46997 * 288.20042 * 4 3 2 6 6 C 1.46892 * 111.00281 * 60.64147 * 3 2 1 7 7 C 1.53005 * 109.47026 * 66.04841 * 6 3 2 8 8 O 1.42905 * 109.47041 * 65.00007 * 7 6 3 9 9 C 1.42895 * 113.99916 * 179.97438 * 8 7 6 10 10 C 1.53073 * 109.43775 * 89.79935 * 9 8 7 11 11 C 1.53192 * 109.29299 * 181.23318 * 10 9 8 12 12 N 1.46922 * 108.89581 * 305.57724 * 11 10 9 13 13 C 1.34779 * 120.63321 * 233.55588 * 12 11 10 14 14 O 1.21283 * 119.99883 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00018 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.47004 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00175 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99662 * 0.02562 * 17 16 15 19 19 C 1.38790 * 120.00261 * 179.97438 * 17 16 15 20 20 N 1.31636 * 120.00015 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00149 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47032 * 90.00508 * 21 19 17 23 23 H 1.48500 * 109.47290 * 210.00210 * 21 19 17 24 24 H 1.48499 * 109.47005 * 330.00094 * 21 19 17 25 25 C 1.46932 * 118.73927 * 53.53524 * 12 11 10 26 26 C 1.53046 * 109.45873 * 209.99811 * 9 8 7 27 27 H 1.09008 * 109.47365 * 181.08207 * 1 2 3 28 28 H 1.09003 * 109.46951 * 301.08109 * 1 2 3 29 29 H 1.08995 * 109.47362 * 61.08222 * 1 2 3 30 30 H 1.09000 * 109.47551 * 239.99951 * 2 1 3 31 31 H 1.09001 * 109.47209 * 119.99820 * 2 1 3 32 32 H 1.08996 * 109.47247 * 48.19958 * 4 3 2 33 33 H 1.09000 * 109.47181 * 168.20150 * 4 3 2 34 34 H 1.08995 * 109.46862 * 59.80535 * 5 4 3 35 35 H 1.09003 * 109.46624 * 179.79916 * 5 4 3 36 36 H 1.08996 * 109.47433 * 299.80130 * 5 4 3 37 37 H 1.08996 * 109.47180 * 306.05213 * 6 3 2 38 38 H 1.09001 * 109.47361 * 186.05101 * 6 3 2 39 39 H 1.09001 * 109.47061 * 305.00318 * 7 6 3 40 40 H 1.08999 * 109.47140 * 184.99916 * 7 6 3 41 41 H 1.08991 * 109.46373 * 329.97343 * 9 8 7 42 42 H 1.08998 * 109.39655 * 61.36262 * 10 9 8 43 43 H 1.09000 * 109.62654 * 301.24586 * 10 9 8 44 44 H 1.09000 * 109.59022 * 185.71836 * 11 10 9 45 45 H 1.09002 * 109.58836 * 65.43454 * 11 10 9 46 46 H 1.08995 * 109.47387 * 300.00327 * 15 13 12 47 47 H 1.09004 * 109.47221 * 60.00456 * 15 13 12 48 48 H 0.97001 * 119.99898 * 179.97438 * 20 19 17 49 49 H 1.08999 * 109.58388 * 66.18220 * 25 12 11 50 50 H 1.08999 * 109.58601 * 186.45962 * 25 12 11 51 51 H 1.09001 * 109.49161 * 58.68259 * 26 9 8 52 52 H 1.08992 * 109.52560 * 298.60138 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6143 2.0866 -1.2254 5 6 2.4193 1.5496 -2.4106 6 6 1.5612 2.1055 1.1952 7 6 2.2061 1.4914 2.4395 8 8 3.6197 1.6961 2.3935 9 6 4.3216 1.1580 3.5159 10 6 4.7260 -0.2880 3.2184 11 6 5.4510 -0.8714 4.4353 12 7 6.5713 0.0106 4.7897 13 6 7.8206 -0.4806 4.9104 14 8 8.0284 -1.6611 4.7254 15 6 8.9593 0.4371 5.2739 16 16 10.4972 -0.5136 5.3575 17 6 11.6266 0.7686 5.7881 18 1 11.2713 1.7803 5.9169 19 6 12.9725 0.4782 5.9627 20 7 13.4054 -0.7551 5.8062 21 14 14.1696 1.8373 6.4199 22 1 14.2561 1.9441 7.8985 23 1 15.5113 1.5219 5.8671 24 1 13.6931 3.1264 5.8574 25 6 6.3040 1.4386 5.0096 26 6 5.5726 1.9975 3.7851 27 1 -0.3634 -1.0275 0.0194 28 1 -0.3633 0.5305 0.8802 29 1 -0.3634 0.4969 -0.8995 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 0.5516 1.9222 -1.4036 33 1 1.8027 3.1542 -1.1120 34 1 2.2335 0.4814 -2.5217 35 1 2.1160 2.0677 -3.3203 36 1 3.4817 1.7172 -2.2340 37 1 0.4768 2.0282 1.2724 38 1 1.8462 3.1548 1.1185 39 1 1.9945 0.4226 2.4684 40 1 1.7990 1.9668 3.3318 41 1 3.6747 1.1789 4.3929 42 1 5.3910 -0.3075 2.3550 43 1 3.8362 -0.8808 3.0064 44 1 5.8301 -1.8643 4.1935 45 1 4.7594 -0.9389 5.2750 46 1 9.0544 1.2156 4.5170 47 1 8.7617 0.8950 6.2432 48 1 14.3461 -0.9579 5.9279 49 1 5.6806 1.5614 5.8952 50 1 7.2458 1.9693 5.1492 51 1 5.2832 3.0312 3.9747 52 1 6.2317 1.9575 2.9180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362691990.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:59 Heat of formation + Delta-G solvation = -79.480025 kcal Electronic energy + Delta-G solvation = -28244.272930 eV Core-core repulsion = 24370.160978 eV Total energy + Delta-G solvation = -3874.111952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.06150 -39.16725 -38.02224 -36.12774 -32.55329 -32.40559 -31.87265 -31.45536 -30.68399 -28.84310 -27.70907 -25.49591 -24.80523 -24.38829 -23.33309 -22.47929 -21.05328 -20.06499 -19.05392 -17.72562 -17.28268 -16.83832 -16.60004 -16.06723 -15.61129 -15.33977 -15.03837 -14.99900 -14.78400 -14.46893 -14.10022 -13.93789 -13.82224 -13.49801 -13.39194 -13.12215 -12.84990 -12.74025 -12.65033 -12.46478 -12.33047 -12.19401 -11.96693 -11.84184 -11.75234 -11.55773 -11.34997 -11.14630 -11.04842 -11.02984 -10.99186 -10.85088 -10.73483 -10.65235 -9.78959 -9.62008 -9.30205 -9.04645 -8.57858 -8.52020 -8.19934 -6.47677 -6.19475 -3.89923 2.95295 3.06066 3.23895 3.27458 3.31903 3.41216 3.54760 3.62506 4.22203 4.49285 4.52393 4.57205 4.65048 4.72809 4.81156 4.86311 4.89117 4.92621 4.97518 5.01401 5.04795 5.06696 5.15473 5.15633 5.17286 5.19111 5.28486 5.36595 5.38895 5.50385 5.54436 5.56222 5.61702 5.62225 5.67718 5.72190 5.73088 5.76084 5.89855 5.96998 5.98885 6.00881 6.14146 6.16364 6.66602 6.71938 6.75247 7.12194 7.57620 7.61816 8.37284 8.58843 9.25744 10.87922 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.001877 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.514808 B =14916.063751 C =15232.700408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.044 3.956 3 N -0.525 5.525 4 C 0.046 3.954 5 C -0.147 4.147 6 C 0.052 3.948 7 C 0.066 3.934 8 O -0.363 6.363 9 C 0.092 3.908 10 C -0.152 4.152 11 C 0.115 3.885 12 N -0.621 5.621 13 C 0.536 3.464 14 O -0.517 6.517 15 C -0.151 4.151 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.112 3.888 26 C -0.130 4.130 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.268 0.732 49 H 0.067 0.933 50 H 0.095 0.905 51 H 0.080 0.920 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.573 7.018 -9.531 31.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.084 4.084 3 N -0.248 5.248 4 C -0.082 4.082 5 C -0.205 4.205 6 C -0.076 4.076 7 C -0.011 4.011 8 O -0.281 6.281 9 C 0.034 3.966 10 C -0.190 4.190 11 C -0.008 4.008 12 N -0.358 5.358 13 C 0.324 3.676 14 O -0.391 6.391 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.012 4.012 26 C -0.169 4.169 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.114 0.886 51 H 0.098 0.902 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -28.478 5.222 -9.944 30.612 hybrid contribution -0.635 2.159 0.694 2.355 sum -29.113 7.381 -9.250 31.426 Atomic orbital electron populations 1.22450 0.98580 1.02483 1.01900 1.22234 0.92435 0.90566 1.03174 1.62189 1.59314 1.01926 1.01412 1.22136 0.97375 0.98442 0.90206 1.21762 1.01355 1.00913 0.96460 1.22191 0.96766 0.98971 0.89637 1.22536 0.82528 0.99414 0.96663 1.88046 1.17554 1.78804 1.43727 1.22049 0.93230 0.92765 0.88531 1.22400 1.00936 0.96230 0.99449 1.21456 0.87873 0.95493 0.95934 1.48132 1.07523 1.08766 1.71367 1.20335 0.82643 0.88792 0.75828 1.90687 1.82941 1.16790 1.48711 1.23557 0.99834 1.02691 1.04061 1.85407 0.93864 1.12870 1.91336 1.22859 0.94736 0.95856 1.54804 0.90935 1.24993 0.97460 0.96300 0.94870 1.70024 1.15825 1.18218 1.46212 0.86169 0.79612 0.81040 0.78685 1.20300 1.20768 1.19680 1.21692 1.01481 0.81218 0.96814 1.21977 0.96210 0.99380 0.99293 0.91965 0.92482 0.92389 0.90409 0.90516 0.94566 0.91036 0.92807 0.92556 0.91635 0.93117 0.89990 0.93331 0.93304 0.92527 0.90399 0.91076 0.88623 0.92036 0.89184 0.89268 0.92208 0.91465 0.88630 0.90160 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.08 9.28 37.15 0.34 -0.74 16 2 C 0.04 0.31 5.70 -3.83 -0.02 0.29 16 3 N -0.52 -4.20 4.62 -234.63 -1.08 -5.28 16 4 C 0.05 0.32 5.56 -3.82 -0.02 0.30 16 5 C -0.15 -1.01 9.96 37.16 0.37 -0.64 16 6 C 0.05 0.37 5.11 -3.83 -0.02 0.35 16 7 C 0.07 0.50 5.80 37.16 0.22 0.72 16 8 O -0.36 -3.77 9.93 -35.23 -0.35 -4.12 16 9 C 0.09 0.90 2.57 -26.67 -0.07 0.83 16 10 C -0.15 -1.61 5.70 -26.59 -0.15 -1.77 16 11 C 0.12 1.43 6.43 -3.71 -0.02 1.41 16 12 N -0.62 -9.01 2.97 -172.77 -0.51 -9.53 16 13 C 0.54 10.41 7.72 -10.98 -0.08 10.32 16 14 O -0.52 -12.03 15.27 5.56 0.08 -11.95 16 15 C -0.15 -3.11 4.50 36.01 0.16 -2.94 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.53 -15.30 9.50 30.94 0.29 -15.00 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 21 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.11 1.24 6.34 -3.71 -0.02 1.21 16 26 C -0.13 -1.32 5.73 -26.61 -0.15 -1.47 16 27 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 28 H 0.06 0.31 6.23 -51.93 -0.32 -0.02 16 29 H 0.06 0.32 6.30 -51.93 -0.33 -0.01 16 30 H 0.08 0.56 6.57 -51.93 -0.34 0.22 16 31 H 0.08 0.57 6.34 -51.93 -0.33 0.24 16 32 H 0.04 0.22 5.92 -51.93 -0.31 -0.09 16 33 H 0.07 0.48 7.81 -51.93 -0.41 0.08 16 34 H 0.05 0.36 6.69 -51.93 -0.35 0.02 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.29 6.00 -51.93 -0.31 -0.02 16 38 H 0.08 0.60 7.86 -51.93 -0.41 0.20 16 39 H 0.05 0.36 6.02 -51.93 -0.31 0.04 16 40 H 0.05 0.31 8.08 -51.93 -0.42 -0.11 16 41 H 0.06 0.48 7.79 -51.93 -0.40 0.07 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 44 H 0.10 1.37 7.00 -51.93 -0.36 1.01 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 1.72 7.69 -51.92 -0.40 1.33 16 47 H 0.09 1.69 7.94 -51.91 -0.41 1.27 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.10 1.08 5.93 -51.93 -0.31 0.77 16 51 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 52 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 412.14 15.07 6.21 6.21 Total: -1.00 -34.46 412.14 -10.49 -44.94 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -9.06 Total: -2.14 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 0.72 Total: -5.14 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: -0.86 Total: -40.40 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.27 Total: -16.07 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.46 -10.49 -44.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362691990.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.537 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds