Wall clock time and date at job start Wed Apr 1 2020 04:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 N 1.46901 * 109.47326 * 2 1 4 4 C 1.46905 * 110.99596 * 296.69035 * 3 2 1 5 5 C 1.53007 * 109.46997 * 288.20042 * 4 3 2 6 6 C 1.46892 * 111.00281 * 60.64147 * 3 2 1 7 7 C 1.53005 * 109.47026 * 66.04841 * 6 3 2 8 8 O 1.42905 * 109.47041 * 65.00007 * 7 6 3 9 9 C 1.42895 * 113.99916 * 179.97438 * 8 7 6 10 10 C 1.53073 * 109.43775 * 89.79935 * 9 8 7 11 11 C 1.53192 * 109.29299 * 181.23318 * 10 9 8 12 12 N 1.46922 * 108.89581 * 305.57724 * 11 10 9 13 13 C 1.34779 * 120.63321 * 233.55588 * 12 11 10 14 14 O 1.21283 * 119.99883 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00018 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.47004 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00175 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99662 * 0.02562 * 17 16 15 19 19 C 1.38790 * 120.00261 * 179.97438 * 17 16 15 20 20 N 1.31636 * 120.00015 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00149 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47032 * 90.00508 * 21 19 17 23 23 H 1.48500 * 109.47290 * 210.00210 * 21 19 17 24 24 H 1.48499 * 109.47005 * 330.00094 * 21 19 17 25 25 C 1.46932 * 118.73927 * 53.53524 * 12 11 10 26 26 C 1.53046 * 109.45873 * 209.99811 * 9 8 7 27 27 H 1.09008 * 109.47365 * 181.08207 * 1 2 3 28 28 H 1.09003 * 109.46951 * 301.08109 * 1 2 3 29 29 H 1.08995 * 109.47362 * 61.08222 * 1 2 3 30 30 H 1.09000 * 109.47551 * 239.99951 * 2 1 3 31 31 H 1.09001 * 109.47209 * 119.99820 * 2 1 3 32 32 H 1.08996 * 109.47247 * 48.19958 * 4 3 2 33 33 H 1.09000 * 109.47181 * 168.20150 * 4 3 2 34 34 H 1.08995 * 109.46862 * 59.80535 * 5 4 3 35 35 H 1.09003 * 109.46624 * 179.79916 * 5 4 3 36 36 H 1.08996 * 109.47433 * 299.80130 * 5 4 3 37 37 H 1.08996 * 109.47180 * 306.05213 * 6 3 2 38 38 H 1.09001 * 109.47361 * 186.05101 * 6 3 2 39 39 H 1.09001 * 109.47061 * 305.00318 * 7 6 3 40 40 H 1.08999 * 109.47140 * 184.99916 * 7 6 3 41 41 H 1.08991 * 109.46373 * 329.97343 * 9 8 7 42 42 H 1.08998 * 109.39655 * 61.36262 * 10 9 8 43 43 H 1.09000 * 109.62654 * 301.24586 * 10 9 8 44 44 H 1.09000 * 109.59022 * 185.71836 * 11 10 9 45 45 H 1.09002 * 109.58836 * 65.43454 * 11 10 9 46 46 H 1.08995 * 109.47387 * 300.00327 * 15 13 12 47 47 H 1.09004 * 109.47221 * 60.00456 * 15 13 12 48 48 H 0.97001 * 119.99898 * 179.97438 * 20 19 17 49 49 H 1.08999 * 109.58388 * 66.18220 * 25 12 11 50 50 H 1.08999 * 109.58601 * 186.45962 * 25 12 11 51 51 H 1.09001 * 109.49161 * 58.68259 * 26 9 8 52 52 H 1.08992 * 109.52560 * 298.60138 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6143 2.0866 -1.2254 5 6 2.4193 1.5496 -2.4106 6 6 1.5612 2.1055 1.1952 7 6 2.2061 1.4914 2.4395 8 8 3.6197 1.6961 2.3935 9 6 4.3216 1.1580 3.5159 10 6 4.7260 -0.2880 3.2184 11 6 5.4510 -0.8714 4.4353 12 7 6.5713 0.0106 4.7897 13 6 7.8206 -0.4806 4.9104 14 8 8.0284 -1.6611 4.7254 15 6 8.9593 0.4371 5.2739 16 16 10.4972 -0.5136 5.3575 17 6 11.6266 0.7686 5.7881 18 1 11.2713 1.7803 5.9169 19 6 12.9725 0.4782 5.9627 20 7 13.4054 -0.7551 5.8062 21 14 14.1696 1.8373 6.4199 22 1 14.2561 1.9441 7.8985 23 1 15.5113 1.5219 5.8671 24 1 13.6931 3.1264 5.8574 25 6 6.3040 1.4386 5.0096 26 6 5.5726 1.9975 3.7851 27 1 -0.3634 -1.0275 0.0194 28 1 -0.3633 0.5305 0.8802 29 1 -0.3634 0.4969 -0.8995 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 0.5516 1.9222 -1.4036 33 1 1.8027 3.1542 -1.1120 34 1 2.2335 0.4814 -2.5217 35 1 2.1160 2.0677 -3.3203 36 1 3.4817 1.7172 -2.2340 37 1 0.4768 2.0282 1.2724 38 1 1.8462 3.1548 1.1185 39 1 1.9945 0.4226 2.4684 40 1 1.7990 1.9668 3.3318 41 1 3.6747 1.1789 4.3929 42 1 5.3910 -0.3075 2.3550 43 1 3.8362 -0.8808 3.0064 44 1 5.8301 -1.8643 4.1935 45 1 4.7594 -0.9389 5.2750 46 1 9.0544 1.2156 4.5170 47 1 8.7617 0.8950 6.2432 48 1 14.3461 -0.9579 5.9279 49 1 5.6806 1.5614 5.8952 50 1 7.2458 1.9693 5.1492 51 1 5.2832 3.0312 3.9747 52 1 6.2317 1.9575 2.9180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362691990.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:59 Heat of formation + Delta-G solvation = -102.368083 kcal Electronic energy + Delta-G solvation = -28245.265430 eV Core-core repulsion = 24370.160978 eV Total energy + Delta-G solvation = -3875.104452 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23271 -39.90568 -38.91966 -37.19503 -34.57962 -33.53162 -32.64917 -32.23835 -31.35284 -30.29563 -28.30064 -27.67165 -25.62656 -25.11160 -24.26979 -23.05734 -22.09786 -20.63157 -20.36358 -19.52279 -18.36238 -17.68419 -17.37902 -16.95162 -16.86390 -16.70011 -16.66061 -15.97983 -15.73665 -15.61119 -15.03665 -14.99694 -14.74181 -14.52293 -14.41565 -14.20651 -13.93821 -13.83344 -13.43007 -13.38916 -13.20194 -13.15735 -12.95751 -12.88680 -12.79961 -12.70472 -12.59336 -12.32992 -12.24272 -12.18431 -11.77998 -11.74368 -11.69675 -11.53289 -11.31157 -11.13665 -10.89890 -10.32278 -10.24612 -9.74139 -9.09224 -8.67104 -8.33939 -6.12498 1.25806 1.43184 1.46178 1.55734 1.57421 2.09682 2.27926 2.72769 3.00077 3.02047 3.25416 3.62728 3.76324 3.90327 3.97444 4.01492 4.07735 4.15013 4.22758 4.25943 4.29523 4.31130 4.37491 4.40052 4.43218 4.44797 4.51329 4.55618 4.58886 4.66863 4.68334 4.74123 4.77529 4.81140 4.86121 4.98316 5.00372 5.06145 5.11826 5.14793 5.15900 5.26152 5.29458 5.42350 5.44453 5.56091 6.18587 6.20363 6.22524 6.26752 6.47324 7.07075 7.13078 8.75322 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.001877 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.514808 B =14916.063751 C =15232.700408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.045 3.955 3 N -0.545 5.545 4 C 0.047 3.953 5 C -0.145 4.145 6 C 0.053 3.947 7 C 0.062 3.938 8 O -0.382 6.382 9 C 0.096 3.904 10 C -0.142 4.142 11 C 0.114 3.886 12 N -0.609 5.609 13 C 0.533 3.467 14 O -0.568 6.568 15 C -0.124 4.124 16 S -0.154 6.154 17 C -0.544 4.544 18 H 0.084 0.916 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.257 1.257 25 C 0.105 3.895 26 C -0.125 4.125 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.111 0.889 48 H 0.271 0.729 49 H 0.101 0.899 50 H 0.094 0.906 51 H 0.102 0.898 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.894 9.647 -8.703 34.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.083 4.083 3 N -0.270 5.270 4 C -0.081 4.081 5 C -0.202 4.202 6 C -0.075 4.075 7 C -0.015 4.015 8 O -0.301 6.301 9 C 0.038 3.962 10 C -0.180 4.180 11 C -0.009 4.009 12 N -0.343 5.343 13 C 0.320 3.680 14 O -0.446 6.446 15 C -0.275 4.275 16 S 0.073 5.927 17 C -0.692 4.692 18 H 0.102 0.898 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.181 1.181 25 C -0.017 4.017 26 C -0.163 4.163 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.111 0.889 46 H 0.123 0.877 47 H 0.129 0.871 48 H 0.080 0.920 49 H 0.119 0.881 50 H 0.112 0.888 51 H 0.121 0.879 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -30.862 7.890 -9.122 33.135 hybrid contribution -0.084 1.352 0.378 1.407 sum -30.946 9.242 -8.744 33.459 Atomic orbital electron populations 1.22370 0.97258 1.02899 1.02111 1.22193 0.93491 0.90105 1.02542 1.62181 1.60191 1.02476 1.02112 1.22137 0.97858 0.98287 0.89783 1.21738 1.00220 1.01030 0.97243 1.22211 0.97629 0.98493 0.89121 1.22716 0.81186 0.99930 0.97671 1.88034 1.19137 1.78810 1.44143 1.22017 0.93436 0.91389 0.89378 1.22307 1.00695 0.97730 0.97306 1.21626 0.87402 0.94000 0.97842 1.48160 1.06230 1.10677 1.69252 1.20153 0.83950 0.87868 0.75983 1.90670 1.83921 1.18627 1.51424 1.23374 0.96413 1.01902 1.05779 1.85603 0.98854 1.16490 1.91729 1.23191 0.95234 0.96048 1.54745 0.89822 1.26152 0.99595 0.99074 0.94454 1.70194 1.16386 1.20804 1.47418 0.84937 0.76539 0.77696 0.78708 1.19205 1.20371 1.18129 1.22010 1.02306 0.78691 0.98653 1.21922 0.95931 1.00733 0.97739 0.91480 0.91978 0.92342 0.91157 0.91081 0.93530 0.91056 0.92972 0.91318 0.93474 0.91491 0.90467 0.93018 0.91407 0.89956 0.93337 0.89246 0.91238 0.88919 0.87654 0.87115 0.92017 0.88122 0.88802 0.87918 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.73 9.28 71.98 0.67 -1.06 16 2 C 0.04 0.58 5.70 86.30 0.49 1.07 16 3 N -0.55 -8.10 4.62 -896.24 -4.14 -12.24 16 4 C 0.05 0.59 5.56 86.30 0.48 1.07 16 5 C -0.14 -1.92 9.96 71.98 0.72 -1.21 16 6 C 0.05 0.64 5.11 86.31 0.44 1.08 16 7 C 0.06 0.78 5.80 71.98 0.42 1.19 16 8 O -0.38 -7.10 9.93 -148.98 -1.48 -8.58 16 9 C 0.10 1.59 2.57 30.63 0.08 1.67 16 10 C -0.14 -2.83 5.70 30.68 0.17 -2.65 16 11 C 0.11 2.67 6.43 86.36 0.56 3.22 16 12 N -0.61 -16.90 2.97 -818.90 -2.44 -19.33 16 13 C 0.53 20.84 7.72 87.66 0.68 21.52 16 14 O -0.57 -27.52 15.27 -3.04 -0.05 -27.57 16 15 C -0.12 -5.07 4.50 71.24 0.32 -4.75 16 16 S -0.15 -8.74 20.57 -56.49 -1.16 -9.90 16 17 C -0.54 -31.40 9.50 67.95 0.65 -30.75 16 18 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 19 C 0.01 0.68 5.49 84.85 0.47 1.15 16 20 N -0.91 -56.61 13.22 21.65 0.29 -56.32 16 21 Si 1.00 43.91 29.55 68.60 2.03 45.93 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 25 C 0.11 2.03 6.34 86.36 0.55 2.58 16 26 C -0.12 -2.22 5.73 30.67 0.18 -2.05 16 27 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.06 0.51 6.23 -2.39 -0.01 0.50 16 29 H 0.06 0.54 6.30 -2.39 -0.02 0.52 16 30 H 0.07 0.99 6.57 -2.39 -0.02 0.97 16 31 H 0.07 0.98 6.34 -2.39 -0.02 0.96 16 32 H 0.05 0.49 5.92 -2.39 -0.01 0.48 16 33 H 0.07 0.89 7.81 -2.39 -0.02 0.87 16 34 H 0.05 0.70 6.69 -2.39 -0.02 0.68 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.59 6.00 -2.39 -0.01 0.57 16 38 H 0.08 1.00 7.86 -2.39 -0.02 0.98 16 39 H 0.05 0.62 6.02 -2.39 -0.01 0.61 16 40 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 41 H 0.08 0.99 7.79 -2.39 -0.02 0.98 16 42 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.09 1.46 7.84 -2.39 -0.02 1.44 16 44 H 0.07 2.04 7.00 -2.39 -0.02 2.02 16 45 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.11 3.97 7.69 -2.40 -0.02 3.95 16 47 H 0.11 4.04 7.94 -2.39 -0.02 4.02 16 48 H 0.27 15.60 8.31 -92.71 -0.77 14.82 16 49 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.09 1.87 5.93 -2.39 -0.01 1.86 16 51 H 0.10 1.41 8.14 -2.39 -0.02 1.40 16 52 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -78.23 412.14 0.80 -77.43 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.89 Total: 18.50 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 6.86 Total: -7.92 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -6.29 Total: -87.90 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -1.53 Total: -36.15 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.90 kcal Total: -78.23 0.80 -77.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362691990.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.937 kcal (2) G-P(sol) polarization free energy of solvation -78.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds