Wall clock time and date at job start Wed Apr 1 2020 03:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47496 * 2 1 4 4 C 1.50707 * 109.46881 * 119.99988 * 2 1 3 5 5 O 1.21284 * 120.00131 * 98.13588 * 4 2 1 6 6 N 1.34774 * 119.99809 * 278.13843 * 4 2 1 7 7 C 1.46502 * 120.00184 * 3.27709 * 6 4 2 8 8 C 1.50709 * 109.47207 * 264.53093 * 7 6 4 9 9 H 1.08003 * 119.99784 * 359.97438 * 8 7 6 10 10 C 1.37869 * 120.00067 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00018 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99990 * 0.02562 * 10 8 7 13 13 H 1.48492 * 109.47323 * 89.99751 * 12 10 8 14 14 H 1.48507 * 109.46963 * 209.99580 * 12 10 8 15 15 H 1.48497 * 109.47180 * 329.99261 * 12 10 8 16 16 C 1.39924 * 120.00147 * 183.28082 * 6 4 2 17 17 C 1.38868 * 120.07541 * 173.10470 * 16 6 4 18 18 C 1.38107 * 119.93138 * 180.23185 * 17 16 6 19 19 C 1.38280 * 120.06928 * 359.51187 * 18 17 16 20 20 C 1.38279 * 120.14303 * 0.46210 * 19 18 17 21 21 C 1.38114 * 120.06804 * 359.79850 * 20 19 18 22 22 N 1.46900 * 109.47326 * 239.99783 * 2 1 3 23 23 C 1.48562 * 110.99808 * 57.66914 * 22 2 1 24 24 C 1.54379 * 104.59390 * 159.03970 * 23 22 2 25 25 H 1.09004 * 118.15648 * 115.85322 * 24 23 22 26 26 C 1.57016 * 118.21376 * 273.73968 * 24 23 22 27 27 H 1.08993 * 118.44007 * 344.29408 * 26 24 23 28 28 C 1.52997 * 116.97186 * 198.71305 * 26 24 23 29 29 O 1.42898 * 109.47430 * 116.97735 * 28 26 24 30 30 C 1.53006 * 59.66676 * 91.17362 * 26 24 23 31 31 H 1.08997 * 119.52241 * 112.39779 * 30 26 24 32 32 C 1.48557 * 111.00136 * 173.09154 * 22 2 1 33 33 H 1.09003 * 109.46724 * 53.85945 * 1 2 3 34 34 H 1.08993 * 109.47017 * 173.85624 * 1 2 3 35 35 H 1.09001 * 109.47032 * 293.86514 * 1 2 3 36 36 H 1.08999 * 109.47154 * 24.52592 * 7 6 4 37 37 H 1.08997 * 109.47529 * 144.53136 * 7 6 4 38 38 H 0.97002 * 120.00210 * 180.02562 * 11 10 8 39 39 H 1.08009 * 120.03058 * 359.95184 * 17 16 6 40 40 H 1.08004 * 119.96695 * 179.72765 * 18 17 16 41 41 H 1.08007 * 119.92944 * 180.21768 * 19 18 17 42 42 H 1.08001 * 119.97098 * 179.76453 * 20 19 18 43 43 H 1.08008 * 120.03530 * 179.97438 * 21 20 19 44 44 H 1.08992 * 110.41359 * 277.81937 * 23 22 2 45 45 H 1.08999 * 110.40804 * 40.26634 * 23 22 2 46 46 H 1.09004 * 109.47359 * 236.97658 * 28 26 24 47 47 H 1.09003 * 109.47407 * 356.97380 * 28 26 24 48 48 H 0.96699 * 114.00722 * 179.97438 * 29 28 26 49 49 H 1.09004 * 110.41005 * 319.74007 * 32 22 2 50 50 H 1.08998 * 110.41135 * 82.06306 * 32 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3746 -1.8720 1.1629 6 7 2.1011 -0.0550 2.4061 7 6 1.6207 1.3255 2.5044 8 6 2.7788 2.2741 2.3302 9 1 3.7733 1.8872 2.1634 10 6 2.5687 3.6356 2.3836 11 7 3.5794 4.4634 2.2321 12 14 0.8488 4.3047 2.6728 13 1 0.6176 4.4623 4.1311 14 1 0.7120 5.6238 2.0045 15 1 -0.1505 3.3600 2.1124 16 6 2.6315 -0.6929 3.5329 17 6 2.8360 0.0220 4.7057 18 6 3.3641 -0.6095 5.8146 19 6 3.6798 -1.9547 5.7610 20 6 3.4769 -2.6697 4.5949 21 6 2.9540 -2.0427 3.4809 22 7 2.0198 -0.6925 -1.1994 23 6 1.4979 -0.0522 -2.4342 24 6 2.4733 -0.4971 -3.5451 25 1 2.0860 -1.1224 -4.3495 26 6 3.7740 0.3519 -3.7745 27 1 3.8256 1.3502 -3.3402 28 6 4.4868 0.1803 -5.1174 29 8 4.4705 1.4203 -5.8273 30 6 3.7873 -0.8374 -2.8121 31 1 4.3708 -1.7236 -3.0614 32 6 3.4953 -0.5696 -1.3200 33 1 -0.3633 0.6061 -0.8300 34 1 -0.3633 -1.0217 -0.1100 35 1 -0.3633 0.4158 0.9398 36 1 0.8806 1.5090 1.7255 37 1 1.1658 1.4833 3.4822 38 1 3.4317 5.4213 2.2701 39 1 2.5865 1.0720 4.7491 40 1 3.5275 -0.0529 6.7256 41 1 4.0894 -2.4471 6.6306 42 1 3.7279 -3.7194 4.5550 43 1 2.7961 -2.6016 2.5702 44 1 0.4898 -0.4064 -2.6492 45 1 1.5069 1.0330 -2.3326 46 1 5.5186 -0.1259 -4.9446 47 1 3.9754 -0.5818 -5.7055 48 1 4.9064 1.3857 -6.6898 49 1 3.8169 0.4347 -1.0440 50 1 3.9910 -1.3119 -0.6945 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367779203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:34 Heat of formation + Delta-G solvation = 11.325320 kcal Electronic energy + Delta-G solvation = -31169.599538 eV Core-core repulsion = 27163.981250 eV Total energy + Delta-G solvation = -4005.618288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.65130 -39.62896 -37.87053 -36.84181 -35.40218 -34.74286 -32.68530 -30.99324 -30.32422 -29.34276 -28.41237 -27.84351 -26.94390 -24.34407 -23.06466 -22.63173 -21.71583 -20.77196 -20.43637 -19.95616 -18.79041 -17.47009 -17.19436 -17.07443 -16.54958 -16.10097 -15.67416 -14.99957 -14.87297 -14.74105 -14.47665 -14.08096 -13.89480 -13.67295 -13.52980 -13.25925 -12.89927 -12.77614 -12.69654 -12.55448 -12.43979 -12.15482 -12.10737 -11.77142 -11.66578 -11.40676 -11.27146 -11.15667 -11.06543 -10.96741 -10.82511 -10.57742 -10.50137 -10.40880 -10.02731 -9.83424 -9.59294 -9.29821 -8.85983 -8.67875 -8.34869 -8.18875 -7.22394 -6.33085 -4.37015 1.84870 2.00369 3.08310 3.09773 3.14883 3.18174 3.37929 3.44097 3.80555 4.14860 4.23974 4.46789 4.56455 4.71085 4.84486 4.96828 5.03933 5.09099 5.16862 5.23478 5.30074 5.37749 5.41267 5.45521 5.49210 5.56257 5.63011 5.69584 5.74715 5.83036 5.95570 5.99907 6.01615 6.07573 6.11842 6.14111 6.19616 6.22898 6.30476 6.38942 6.47605 6.65310 6.87585 6.89895 6.99587 7.08790 7.13624 7.20449 7.25674 7.43758 7.77712 7.91019 8.25316 8.67003 8.74497 9.23582 10.78959 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.004016 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.189159 B = 6970.190329 C = 8728.886709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 H 0.090 0.910 4 C 0.527 3.473 5 O -0.519 6.519 6 N -0.530 5.530 7 C 0.195 3.805 8 C -0.545 4.545 9 H 0.080 0.920 10 C 0.082 3.918 11 N -0.883 5.883 12 Si 0.866 3.134 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.263 1.263 16 C 0.169 3.831 17 C -0.143 4.143 18 C -0.105 4.105 19 C -0.161 4.161 20 C -0.109 4.109 21 C -0.179 4.179 22 N -0.485 5.485 23 C 0.061 3.939 24 C -0.157 4.157 25 H 0.118 0.882 26 C -0.129 4.129 27 H 0.113 0.887 28 C 0.110 3.890 29 O -0.570 6.570 30 C -0.142 4.142 31 H 0.115 0.885 32 C 0.058 3.942 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.037 0.963 38 H 0.268 0.732 39 H 0.137 0.863 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.179 0.821 44 H 0.087 0.913 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.048 0.952 48 H 0.379 0.621 49 H 0.053 0.947 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.647 -9.148 -8.430 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.059 4.059 3 H 0.107 0.893 4 C 0.317 3.683 5 O -0.397 6.397 6 N -0.249 5.249 7 C 0.075 3.925 8 C -0.583 4.583 9 H 0.098 0.902 10 C -0.123 4.123 11 N -0.519 5.519 12 Si 0.692 3.308 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.188 1.188 16 C 0.074 3.926 17 C -0.163 4.163 18 C -0.124 4.124 19 C -0.180 4.180 20 C -0.128 4.128 21 C -0.199 4.199 22 N -0.210 5.210 23 C -0.066 4.066 24 C -0.175 4.175 25 H 0.136 0.864 26 C -0.148 4.148 27 H 0.131 0.869 28 C 0.033 3.967 29 O -0.375 6.375 30 C -0.161 4.161 31 H 0.133 0.867 32 C -0.070 4.070 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.155 0.845 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.195 0.805 44 H 0.106 0.894 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.226 0.774 49 H 0.072 0.928 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.977 -9.857 -7.929 12.996 hybrid contribution -0.101 1.417 -0.136 1.427 sum -3.078 -8.439 -8.066 12.073 Atomic orbital electron populations 1.21838 0.92173 1.03095 1.02925 1.21805 0.97170 0.97769 0.89107 0.89280 1.20396 0.77588 0.86314 0.84022 1.90255 1.48493 1.16696 1.84217 1.45654 1.56682 1.15287 1.07322 1.20153 0.96696 0.77225 0.98439 1.21229 0.94955 0.90178 1.51946 0.90187 1.24833 0.96752 0.96630 0.94112 1.69877 1.30679 1.03294 1.48095 0.87004 0.85013 0.79389 0.79401 1.19600 1.20591 1.18774 1.18038 0.95930 0.91740 0.86916 1.21105 1.02330 1.00800 0.92075 1.20858 0.99114 0.94569 0.97833 1.20989 1.04053 0.94795 0.98129 1.21022 0.99481 0.99256 0.93033 1.22745 1.01282 0.93956 1.01885 1.65454 1.05555 1.49941 1.00071 1.22616 0.98247 0.97447 0.88304 1.24193 0.88954 1.03947 1.00443 0.86392 1.23015 0.98868 0.97338 0.95550 0.86903 1.21569 0.98560 0.85571 0.91019 1.86510 1.81855 1.33853 1.35324 1.23413 1.01150 0.98949 0.92579 0.86693 1.22700 0.88827 1.01587 0.93854 0.91452 0.91188 0.91247 0.93571 0.94542 0.92137 0.84526 0.86490 0.87148 0.86773 0.80495 0.89428 0.93101 0.92980 0.93391 0.77434 0.92849 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.45 37.16 0.31 -1.79 16 2 C 0.05 0.93 1.41 -68.86 -0.10 0.83 16 3 H 0.09 1.74 6.73 -51.93 -0.35 1.39 16 4 C 0.53 10.53 6.29 -10.98 -0.07 10.46 16 5 O -0.52 -10.87 12.20 5.55 0.07 -10.80 16 6 N -0.53 -11.09 2.69 -114.73 -0.31 -11.40 16 7 C 0.20 4.22 3.13 -5.19 -0.02 4.20 16 8 C -0.55 -13.89 9.06 -34.44 -0.31 -14.20 16 9 H 0.08 2.34 8.06 -52.48 -0.42 1.91 16 10 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 11 N -0.88 -24.96 13.96 55.43 0.77 -24.19 16 12 Si 0.87 19.05 27.47 -169.99 -4.67 14.39 16 13 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.26 -5.38 6.54 56.52 0.37 -5.01 16 16 C 0.17 3.50 6.47 -83.70 -0.54 2.96 16 17 C -0.14 -2.82 9.03 -39.40 -0.36 -3.17 16 18 C -0.11 -1.79 10.04 -39.61 -0.40 -2.18 16 19 C -0.16 -2.55 10.04 -39.55 -0.40 -2.94 16 20 C -0.11 -1.82 10.04 -39.61 -0.40 -2.22 16 21 C -0.18 -3.47 9.04 -39.39 -0.36 -3.83 16 22 N -0.49 -7.81 4.85 -223.41 -1.08 -8.89 16 23 C 0.06 0.83 5.11 -2.18 -0.01 0.82 16 24 C -0.16 -1.91 6.90 -87.06 -0.60 -2.51 16 25 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 26 C -0.13 -1.62 5.81 -88.44 -0.51 -2.13 16 27 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 28 C 0.11 1.10 7.33 37.16 0.27 1.37 16 29 O -0.57 -6.11 13.66 -35.23 -0.48 -6.59 16 30 C -0.14 -1.84 6.70 -89.23 -0.60 -2.44 16 31 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 32 C 0.06 0.94 5.59 -2.19 -0.01 0.92 16 33 H 0.07 0.86 7.23 -51.93 -0.38 0.48 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.04 6.53 -51.93 -0.34 0.70 16 36 H 0.05 0.95 3.79 -51.93 -0.20 0.75 16 37 H 0.04 0.78 6.27 -51.93 -0.33 0.45 16 38 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.14 2.83 6.15 -52.48 -0.32 2.51 16 40 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.18 3.59 4.55 -56.16 -0.26 3.34 16 44 H 0.09 1.05 7.80 -51.93 -0.40 0.64 16 45 H 0.05 0.72 7.99 -51.93 -0.42 0.31 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.05 0.40 7.95 -51.93 -0.41 -0.01 16 48 H 0.38 2.09 9.12 45.56 0.42 2.50 16 49 H 0.05 0.96 7.86 -51.93 -0.41 0.55 16 50 H 0.09 1.63 7.51 -51.93 -0.39 1.24 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -30.44 392.22 -10.73 -41.17 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -6.75 Total: 14.24 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -4.19 Total: -13.84 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.62 Total: -44.47 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.41 Total: -17.39 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.67 Total: 14.39 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.44 -10.73 -41.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367779203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.494 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds