Wall clock time and date at job start Wed Apr 1 2020 03:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47496 * 2 1 4 4 C 1.50707 * 109.46881 * 119.99988 * 2 1 3 5 5 O 1.21284 * 120.00131 * 98.13588 * 4 2 1 6 6 N 1.34774 * 119.99809 * 278.13843 * 4 2 1 7 7 C 1.46502 * 120.00184 * 3.27709 * 6 4 2 8 8 C 1.50709 * 109.47207 * 264.53093 * 7 6 4 9 9 H 1.08003 * 119.99784 * 359.97438 * 8 7 6 10 10 C 1.37869 * 120.00067 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00018 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99990 * 0.02562 * 10 8 7 13 13 H 1.48492 * 109.47323 * 89.99751 * 12 10 8 14 14 H 1.48507 * 109.46963 * 209.99580 * 12 10 8 15 15 H 1.48497 * 109.47180 * 329.99261 * 12 10 8 16 16 C 1.39924 * 120.00147 * 183.28082 * 6 4 2 17 17 C 1.38868 * 120.07541 * 173.10470 * 16 6 4 18 18 C 1.38107 * 119.93138 * 180.23185 * 17 16 6 19 19 C 1.38280 * 120.06928 * 359.51187 * 18 17 16 20 20 C 1.38279 * 120.14303 * 0.46210 * 19 18 17 21 21 C 1.38114 * 120.06804 * 359.79850 * 20 19 18 22 22 N 1.46900 * 109.47326 * 239.99783 * 2 1 3 23 23 C 1.48562 * 110.99808 * 57.66914 * 22 2 1 24 24 C 1.54379 * 104.59390 * 159.03970 * 23 22 2 25 25 H 1.09004 * 118.15648 * 115.85322 * 24 23 22 26 26 C 1.57016 * 118.21376 * 273.73968 * 24 23 22 27 27 H 1.08993 * 118.44007 * 344.29408 * 26 24 23 28 28 C 1.52997 * 116.97186 * 198.71305 * 26 24 23 29 29 O 1.42898 * 109.47430 * 116.97735 * 28 26 24 30 30 C 1.53006 * 59.66676 * 91.17362 * 26 24 23 31 31 H 1.08997 * 119.52241 * 112.39779 * 30 26 24 32 32 C 1.48557 * 111.00136 * 173.09154 * 22 2 1 33 33 H 1.09003 * 109.46724 * 53.85945 * 1 2 3 34 34 H 1.08993 * 109.47017 * 173.85624 * 1 2 3 35 35 H 1.09001 * 109.47032 * 293.86514 * 1 2 3 36 36 H 1.08999 * 109.47154 * 24.52592 * 7 6 4 37 37 H 1.08997 * 109.47529 * 144.53136 * 7 6 4 38 38 H 0.97002 * 120.00210 * 180.02562 * 11 10 8 39 39 H 1.08009 * 120.03058 * 359.95184 * 17 16 6 40 40 H 1.08004 * 119.96695 * 179.72765 * 18 17 16 41 41 H 1.08007 * 119.92944 * 180.21768 * 19 18 17 42 42 H 1.08001 * 119.97098 * 179.76453 * 20 19 18 43 43 H 1.08008 * 120.03530 * 179.97438 * 21 20 19 44 44 H 1.08992 * 110.41359 * 277.81937 * 23 22 2 45 45 H 1.08999 * 110.40804 * 40.26634 * 23 22 2 46 46 H 1.09004 * 109.47359 * 236.97658 * 28 26 24 47 47 H 1.09003 * 109.47407 * 356.97380 * 28 26 24 48 48 H 0.96699 * 114.00722 * 179.97438 * 29 28 26 49 49 H 1.09004 * 110.41005 * 319.74007 * 32 22 2 50 50 H 1.08998 * 110.41135 * 82.06306 * 32 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3746 -1.8720 1.1629 6 7 2.1011 -0.0550 2.4061 7 6 1.6207 1.3255 2.5044 8 6 2.7788 2.2741 2.3302 9 1 3.7733 1.8872 2.1634 10 6 2.5687 3.6356 2.3836 11 7 3.5794 4.4634 2.2321 12 14 0.8488 4.3047 2.6728 13 1 0.6176 4.4623 4.1311 14 1 0.7120 5.6238 2.0045 15 1 -0.1505 3.3600 2.1124 16 6 2.6315 -0.6929 3.5329 17 6 2.8360 0.0220 4.7057 18 6 3.3641 -0.6095 5.8146 19 6 3.6798 -1.9547 5.7610 20 6 3.4769 -2.6697 4.5949 21 6 2.9540 -2.0427 3.4809 22 7 2.0198 -0.6925 -1.1994 23 6 1.4979 -0.0522 -2.4342 24 6 2.4733 -0.4971 -3.5451 25 1 2.0860 -1.1224 -4.3495 26 6 3.7740 0.3519 -3.7745 27 1 3.8256 1.3502 -3.3402 28 6 4.4868 0.1803 -5.1174 29 8 4.4705 1.4203 -5.8273 30 6 3.7873 -0.8374 -2.8121 31 1 4.3708 -1.7236 -3.0614 32 6 3.4953 -0.5696 -1.3200 33 1 -0.3633 0.6061 -0.8300 34 1 -0.3633 -1.0217 -0.1100 35 1 -0.3633 0.4158 0.9398 36 1 0.8806 1.5090 1.7255 37 1 1.1658 1.4833 3.4822 38 1 3.4317 5.4213 2.2701 39 1 2.5865 1.0720 4.7491 40 1 3.5275 -0.0529 6.7256 41 1 4.0894 -2.4471 6.6306 42 1 3.7279 -3.7194 4.5550 43 1 2.7961 -2.6016 2.5702 44 1 0.4898 -0.4064 -2.6492 45 1 1.5069 1.0330 -2.3326 46 1 5.5186 -0.1259 -4.9446 47 1 3.9754 -0.5818 -5.7055 48 1 4.9064 1.3857 -6.6898 49 1 3.8169 0.4347 -1.0440 50 1 3.9910 -1.3119 -0.6945 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367779203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:33 Heat of formation + Delta-G solvation = -9.644537 kcal Electronic energy + Delta-G solvation = -31170.508859 eV Core-core repulsion = 27163.981250 eV Total energy + Delta-G solvation = -4006.527609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.11933 -40.85639 -39.25831 -37.73919 -37.06012 -35.92147 -34.67158 -32.26759 -31.76501 -30.84657 -29.77136 -29.41632 -27.92342 -25.69388 -24.81635 -23.97772 -23.13998 -22.15114 -21.49394 -21.04149 -20.29311 -19.20398 -18.57971 -18.28652 -18.10371 -17.29531 -17.05310 -16.47587 -16.25748 -16.04557 -15.67601 -15.44318 -15.19868 -15.05155 -14.97121 -14.68073 -14.39290 -14.28691 -14.01311 -13.86584 -13.82800 -13.53397 -13.39422 -13.26362 -13.04294 -12.80819 -12.63110 -12.51065 -12.47370 -12.32364 -12.14883 -11.98616 -11.91724 -11.78648 -11.36853 -11.09450 -10.98313 -10.87150 -10.50877 -10.19005 -9.78228 -9.55300 -8.77098 -8.38195 -6.47790 0.39904 0.56591 1.33979 1.34384 1.43869 1.56004 1.91412 2.26254 2.40857 2.71546 2.94235 3.02176 3.13379 3.32413 3.59426 3.70751 3.90673 4.05160 4.11632 4.14717 4.17356 4.19227 4.20196 4.30919 4.35190 4.41593 4.44121 4.45411 4.54050 4.55914 4.63444 4.66947 4.67358 4.70371 4.77918 4.82186 4.83091 4.94603 5.09557 5.14105 5.22991 5.24300 5.28911 5.39847 5.57851 5.62947 5.68540 5.74570 5.80408 6.03694 6.29994 6.45777 6.57108 6.93247 7.08618 7.18573 8.77935 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.004016 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.189159 B = 6970.190329 C = 8728.886709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.057 3.943 3 H 0.060 0.940 4 C 0.520 3.480 5 O -0.533 6.533 6 N -0.538 5.538 7 C 0.207 3.793 8 C -0.539 4.539 9 H 0.023 0.977 10 C 0.026 3.974 11 N -0.936 5.936 12 Si 0.933 3.067 13 H -0.261 1.261 14 H -0.280 1.280 15 H -0.233 1.233 16 C 0.138 3.862 17 C -0.166 4.166 18 C -0.104 4.104 19 C -0.149 4.149 20 C -0.105 4.105 21 C -0.196 4.196 22 N -0.486 5.486 23 C 0.056 3.944 24 C -0.141 4.141 25 H 0.150 0.850 26 C -0.133 4.133 27 H 0.080 0.920 28 C 0.115 3.885 29 O -0.595 6.595 30 C -0.145 4.145 31 H 0.136 0.864 32 C 0.057 3.943 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.270 0.730 39 H 0.118 0.882 40 H 0.144 0.856 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.167 0.833 44 H 0.114 0.886 45 H 0.039 0.961 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.401 0.599 49 H 0.018 0.982 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 -10.921 -8.869 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.055 4.055 3 H 0.078 0.922 4 C 0.311 3.689 5 O -0.412 6.412 6 N -0.258 5.258 7 C 0.086 3.914 8 C -0.577 4.577 9 H 0.042 0.958 10 C -0.174 4.174 11 N -0.575 5.575 12 Si 0.755 3.245 13 H -0.186 1.186 14 H -0.206 1.206 15 H -0.155 1.155 16 C 0.043 3.957 17 C -0.187 4.187 18 C -0.122 4.122 19 C -0.168 4.168 20 C -0.124 4.124 21 C -0.216 4.216 22 N -0.211 5.211 23 C -0.071 4.071 24 C -0.160 4.160 25 H 0.168 0.832 26 C -0.152 4.152 27 H 0.098 0.902 28 C 0.038 3.962 29 O -0.404 6.404 30 C -0.164 4.164 31 H 0.154 0.846 32 C -0.070 4.070 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.164 0.836 43 H 0.183 0.817 44 H 0.132 0.868 45 H 0.057 0.943 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.251 0.749 49 H 0.037 0.963 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.907 -11.659 -8.382 15.175 hybrid contribution 0.677 1.903 0.068 2.021 sum -4.230 -9.756 -8.314 13.499 Atomic orbital electron populations 1.21855 0.89552 1.04209 1.03863 1.21774 0.99155 0.95763 0.88815 0.92203 1.20887 0.77243 0.86392 0.84424 1.90241 1.49129 1.17306 1.84495 1.45689 1.57140 1.14917 1.08070 1.19952 0.95251 0.76989 0.99202 1.21228 0.93900 0.91249 1.51369 0.95817 1.25737 1.01445 0.96665 0.93548 1.70042 1.33617 1.03713 1.50109 0.85925 0.79798 0.78964 0.79836 1.18608 1.20586 1.15548 1.18378 0.97442 0.92666 0.87227 1.21128 1.04208 1.00145 0.93180 1.21228 0.97711 0.95517 0.97757 1.21426 1.02238 0.94128 0.99014 1.21409 0.97871 1.00789 0.92294 1.22734 1.02587 0.93507 1.02735 1.65505 1.05131 1.49869 1.00557 1.22782 0.99933 0.96783 0.87608 1.24352 0.87942 1.03375 1.00308 0.83241 1.23030 0.99889 0.95446 0.96826 0.90215 1.21574 0.99102 0.85890 0.89679 1.86449 1.82473 1.34516 1.36998 1.23334 1.02783 1.00131 0.90127 0.84583 1.22575 0.89340 0.98787 0.96332 0.89009 0.90269 0.91429 0.91888 0.93621 0.92048 0.86445 0.83801 0.83042 0.83644 0.81706 0.86837 0.94302 0.91905 0.90718 0.74876 0.96341 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 8.45 71.98 0.61 -3.31 16 2 C 0.06 2.06 1.41 44.17 0.06 2.12 16 3 H 0.06 2.51 6.73 -2.39 -0.02 2.50 16 4 C 0.52 21.81 6.29 87.66 0.55 22.36 16 5 O -0.53 -23.33 12.20 -3.04 -0.04 -23.37 16 6 N -0.54 -23.67 2.69 -635.29 -1.71 -25.38 16 7 C 0.21 9.24 3.13 85.64 0.27 9.51 16 8 C -0.54 -29.28 9.06 25.60 0.23 -29.04 16 9 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 10 C 0.03 1.41 5.47 84.65 0.46 1.87 16 11 N -0.94 -55.79 13.96 21.44 0.30 -55.49 16 12 Si 0.93 39.47 27.47 68.60 1.88 41.36 16 13 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 14 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 15 H -0.23 -8.63 6.54 99.48 0.65 -7.98 16 16 C 0.14 5.91 6.47 38.15 0.25 6.16 16 17 C -0.17 -6.74 9.03 22.39 0.20 -6.54 16 18 C -0.10 -3.40 10.04 22.25 0.22 -3.17 16 19 C -0.15 -4.33 10.04 22.29 0.22 -4.10 16 20 C -0.11 -3.34 10.04 22.25 0.22 -3.11 16 21 C -0.20 -7.72 9.04 22.39 0.20 -7.52 16 22 N -0.49 -15.98 4.85 -860.73 -4.17 -20.15 16 23 C 0.06 1.46 5.11 86.45 0.44 1.90 16 24 C -0.14 -3.20 6.90 -8.49 -0.06 -3.26 16 25 H 0.15 2.51 8.14 -2.39 -0.02 2.50 16 26 C -0.13 -3.31 5.81 -9.38 -0.05 -3.37 16 27 H 0.08 2.51 8.14 -2.39 -0.02 2.50 16 28 C 0.11 2.07 7.33 71.98 0.53 2.60 16 29 O -0.60 -11.96 13.66 -148.98 -2.03 -13.99 16 30 C -0.14 -3.76 6.70 -9.89 -0.07 -3.83 16 31 H 0.14 2.95 8.14 -2.39 -0.02 2.93 16 32 C 0.06 2.01 5.59 86.45 0.48 2.49 16 33 H 0.09 2.15 7.23 -2.39 -0.02 2.13 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.07 1.94 6.53 -2.39 -0.02 1.93 16 36 H 0.06 2.60 3.79 -2.39 -0.01 2.59 16 37 H 0.05 1.96 6.27 -2.39 -0.01 1.95 16 38 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.12 5.11 6.15 -2.91 -0.02 5.09 16 40 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 41 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 42 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 43 H 0.17 6.92 4.55 -61.22 -0.28 6.64 16 44 H 0.11 2.41 7.80 -2.39 -0.02 2.39 16 45 H 0.04 1.12 7.99 -2.39 -0.02 1.10 16 46 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.07 0.97 7.95 -2.39 -0.02 0.96 16 48 H 0.40 3.68 9.12 -74.06 -0.68 3.00 16 49 H 0.02 0.75 7.86 -2.38 -0.02 0.73 16 50 H 0.07 2.72 7.51 -2.39 -0.02 2.70 16 Total: -1.00 -72.25 392.22 -1.02 -73.28 By element: Atomic # 1 Polarization: 42.01 SS G_CDS: -0.03 Total: 41.98 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 4.78 Total: -18.23 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -5.58 Total: -101.02 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -2.07 Total: -37.36 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 1.88 Total: 41.36 kcal Total: -72.25 -1.02 -73.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367779203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.633 kcal (2) G-P(sol) polarization free energy of solvation -72.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds