Wall clock time and date at job start Wed Apr 1 2020 03:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47319 * 2 1 4 4 C 1.50703 * 109.46965 * 239.99879 * 2 1 3 5 5 O 1.21281 * 120.00282 * 269.29780 * 4 2 1 6 6 N 1.34780 * 119.99556 * 89.29212 * 4 2 1 7 7 C 1.46500 * 120.00208 * 354.96638 * 6 4 2 8 8 C 1.50699 * 109.47084 * 94.76210 * 7 6 4 9 9 H 1.08005 * 119.99847 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99707 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00111 * 359.97438 * 10 8 7 12 12 Si 1.86809 * 119.99713 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46592 * 89.99975 * 12 10 8 14 14 H 1.48496 * 109.46845 * 209.99656 * 12 10 8 15 15 H 1.48498 * 109.46859 * 330.00045 * 12 10 8 16 16 C 1.39925 * 119.99634 * 174.96132 * 6 4 2 17 17 C 1.38872 * 120.07262 * 6.20117 * 16 6 4 18 18 C 1.38114 * 119.93261 * 179.76243 * 17 16 6 19 19 C 1.38289 * 120.06660 * 0.48800 * 18 17 16 20 20 C 1.38284 * 120.14022 * 359.76514 * 19 18 17 21 21 C 1.38113 * 120.07266 * 0.02562 * 20 19 18 22 22 N 1.46901 * 109.47005 * 120.00444 * 2 1 3 23 23 C 1.47053 * 110.99833 * 298.30404 * 22 2 1 24 24 C 1.53679 * 108.88220 * 181.79334 * 23 22 2 25 25 H 1.09001 * 112.54501 * 186.66913 * 24 23 22 26 26 C 1.54716 * 107.84675 * 310.91537 * 24 23 22 27 27 C 1.54554 * 103.81637 * 88.33390 * 26 24 23 28 28 C 1.54716 * 103.82606 * 0.02562 * 27 26 24 29 29 H 1.08992 * 112.16583 * 147.18245 * 28 27 26 30 30 C 1.47051 * 110.99932 * 174.05146 * 22 2 1 31 31 O 1.44646 * 107.28856 * 62.80658 * 24 23 22 32 32 H 1.09001 * 109.47235 * 185.56106 * 1 2 3 33 33 H 1.09009 * 109.46901 * 305.56233 * 1 2 3 34 34 H 1.08993 * 109.47348 * 65.55711 * 1 2 3 35 35 H 1.08997 * 109.46784 * 214.75965 * 7 6 4 36 36 H 1.08998 * 109.47011 * 334.76175 * 7 6 4 37 37 H 0.96993 * 119.99586 * 180.02562 * 11 10 8 38 38 H 1.08005 * 120.03289 * 359.97406 * 17 16 6 39 39 H 1.07994 * 119.96507 * 180.25038 * 18 17 16 40 40 H 1.08000 * 119.92479 * 179.74296 * 19 18 17 41 41 H 1.07998 * 119.96322 * 179.97438 * 20 19 18 42 42 H 1.07996 * 120.03328 * 179.97438 * 21 20 19 43 43 H 1.09004 * 109.56627 * 61.97833 * 23 22 2 44 44 H 1.09000 * 109.67268 * 301.68073 * 23 22 2 45 45 H 1.08997 * 110.56047 * 329.75077 * 26 24 23 46 46 H 1.08997 * 110.67602 * 206.97551 * 26 24 23 47 47 H 1.08998 * 110.55531 * 241.41360 * 27 26 24 48 48 H 1.09004 * 110.68147 * 118.64361 * 27 26 24 49 49 H 1.09005 * 109.57181 * 58.38114 * 30 22 2 50 50 H 1.08998 * 109.56687 * 298.02218 * 30 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.2466 -1.9037 -1.1968 6 7 2.2433 -0.0197 -2.3684 7 6 1.8808 1.3978 -2.4428 8 6 3.0878 2.2423 -2.1249 9 1 4.0305 1.7702 -1.8904 10 6 2.9886 3.6174 -2.1334 11 7 1.8408 4.1922 -2.4194 12 14 4.4846 4.6642 -1.7386 13 1 5.2273 4.9582 -2.9905 14 1 4.0465 5.9374 -1.1124 15 1 5.3692 3.9291 -0.7992 16 6 2.8086 -0.6565 -3.4787 17 6 3.0339 -2.0266 -3.4551 18 6 3.5876 -2.6530 -4.5545 19 6 3.9268 -1.9157 -5.6742 20 6 3.7086 -0.5504 -5.6988 21 6 3.1513 0.0812 -4.6043 22 7 2.0196 -0.6926 1.1994 23 6 1.5815 -0.0028 2.4220 24 6 2.1562 -0.7398 3.6419 25 1 1.7745 -0.3481 4.5848 26 6 1.8537 -2.2474 3.4710 27 6 3.0642 -2.7783 2.6702 28 6 3.9461 -1.5248 2.4587 29 1 5.0087 -1.7670 2.4461 30 6 3.4826 -0.8367 1.1644 31 8 3.5975 -0.6517 3.5577 32 1 -0.3634 -1.0228 0.0996 33 1 -0.3633 0.5977 0.8361 34 1 -0.3634 0.4252 -0.9355 35 1 1.5291 1.6306 -3.4479 36 1 1.0900 1.6088 -1.7231 37 1 1.7712 5.1596 -2.4257 38 1 2.7733 -2.6023 -2.5793 39 1 3.7593 -3.7191 -4.5383 40 1 4.3634 -2.4072 -6.5310 41 1 3.9750 0.0227 -6.5746 42 1 2.9815 1.1476 -4.6241 43 1 0.4927 -0.0063 2.4729 44 1 1.9432 1.0254 2.4128 45 1 0.9305 -2.3913 2.9096 46 1 1.7910 -2.7398 4.4414 47 1 2.7406 -3.1852 1.7122 48 1 3.6035 -3.5330 3.2427 49 1 3.9448 0.1477 1.0887 50 1 3.7692 -1.4435 0.3055 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372625264.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:30 Heat of formation + Delta-G solvation = -18.231444 kcal Electronic energy + Delta-G solvation = -32300.746782 eV Core-core repulsion = 28293.846817 eV Total energy + Delta-G solvation = -4006.899965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.95043 -40.04629 -37.95543 -35.71593 -35.32690 -32.76441 -32.08289 -31.43225 -30.78563 -30.28517 -29.10497 -27.36240 -25.71096 -24.54999 -23.59366 -23.20947 -21.93582 -21.04131 -20.87693 -19.52813 -18.84144 -17.21350 -16.89803 -16.70563 -16.42045 -15.69950 -15.37423 -15.00085 -14.92359 -14.49481 -14.42865 -14.19236 -13.96412 -13.73442 -13.41709 -13.19666 -12.89673 -12.72445 -12.69465 -12.34741 -12.24136 -12.00192 -11.86019 -11.57432 -11.55013 -11.51487 -11.22323 -11.14326 -11.08793 -10.85614 -10.75258 -10.70069 -10.55937 -10.33034 -10.31215 -10.11714 -9.50326 -9.23719 -8.75044 -8.58405 -8.34235 -8.05524 -7.22260 -6.33116 -4.42255 1.85541 2.01099 3.10163 3.14921 3.22681 3.27314 3.48829 3.96802 4.08894 4.22240 4.48837 4.74510 4.85396 4.89482 4.91921 5.00266 5.03526 5.23883 5.39293 5.45378 5.45937 5.52109 5.56972 5.62646 5.70578 5.71682 5.77507 5.87841 5.88852 5.99502 6.05078 6.07106 6.09351 6.10174 6.16331 6.19723 6.24739 6.35171 6.38517 6.53583 6.74069 6.85936 6.88733 6.97386 7.04601 7.11532 7.16152 7.20416 7.28688 7.59322 7.81584 7.82893 8.07615 8.61660 8.75773 9.26449 10.72901 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008608 B = 0.005017 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.091008 B = 5580.233612 C = 7567.495775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.064 3.936 3 H 0.089 0.911 4 C 0.526 3.474 5 O -0.526 6.526 6 N -0.534 5.534 7 C 0.226 3.774 8 C -0.541 4.541 9 H 0.062 0.938 10 C 0.070 3.930 11 N -0.887 5.887 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.283 1.283 15 H -0.272 1.272 16 C 0.169 3.831 17 C -0.182 4.182 18 C -0.110 4.110 19 C -0.162 4.162 20 C -0.106 4.106 21 C -0.143 4.143 22 N -0.508 5.508 23 C 0.027 3.973 24 C 0.073 3.927 25 H 0.113 0.887 26 C -0.132 4.132 27 C -0.134 4.134 28 C 0.075 3.925 29 H 0.112 0.888 30 C 0.023 3.977 31 O -0.374 6.374 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.268 0.732 38 H 0.180 0.820 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.139 0.861 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.083 0.917 46 H 0.061 0.939 47 H 0.090 0.910 48 H 0.061 0.939 49 H 0.044 0.956 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.349 -9.807 5.819 11.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.047 4.047 3 H 0.107 0.893 4 C 0.315 3.685 5 O -0.405 6.405 6 N -0.253 5.253 7 C 0.107 3.893 8 C -0.580 4.580 9 H 0.080 0.920 10 C -0.134 4.134 11 N -0.524 5.524 12 Si 0.723 3.277 13 H -0.203 1.203 14 H -0.209 1.209 15 H -0.197 1.197 16 C 0.073 3.927 17 C -0.202 4.202 18 C -0.129 4.129 19 C -0.181 4.181 20 C -0.125 4.125 21 C -0.163 4.163 22 N -0.234 5.234 23 C -0.101 4.101 24 C 0.015 3.985 25 H 0.130 0.870 26 C -0.170 4.170 27 C -0.172 4.172 28 C 0.018 3.982 29 H 0.129 0.871 30 C -0.105 4.105 31 O -0.293 6.293 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.196 0.804 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.157 0.843 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.102 0.898 46 H 0.080 0.920 47 H 0.108 0.892 48 H 0.079 0.921 49 H 0.062 0.938 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.450 -10.498 6.026 12.191 hybrid contribution 1.102 1.765 -0.235 2.094 sum -0.348 -8.733 5.791 10.485 Atomic orbital electron populations 1.21746 0.92171 1.02726 1.02788 1.21669 0.97113 0.97817 0.88091 0.89348 1.20454 0.77095 0.86711 0.84202 1.90220 1.51804 1.15097 1.83427 1.46033 1.55880 1.13586 1.09842 1.19748 0.97113 0.72897 0.99554 1.21353 0.96300 0.91028 1.49300 0.91997 1.24899 0.96271 0.97715 0.94509 1.69906 1.24156 1.10929 1.47449 0.86511 0.82628 0.79679 0.78888 1.20255 1.20903 1.19712 1.18079 0.95361 0.91697 0.87518 1.22792 1.01743 0.93935 1.01687 1.21019 0.99232 0.99124 0.93490 1.20978 1.04061 0.94433 0.98625 1.20863 0.99364 0.94469 0.97804 1.21143 1.01527 1.01014 0.92651 1.61989 1.11066 1.49919 1.00411 1.22854 1.00946 0.96374 0.89913 1.23428 0.81734 0.95867 0.97494 0.86961 1.22778 0.99884 0.94659 0.99695 1.22802 0.95745 0.97045 1.01604 1.23424 0.99458 0.89487 0.85878 0.87058 1.22930 0.87808 1.00645 0.99137 1.89237 1.21106 1.66624 1.52289 0.91448 0.91634 0.91320 0.93726 0.93282 0.92270 0.80437 0.86874 0.87244 0.86586 0.84350 0.89460 0.93561 0.89804 0.91995 0.89161 0.92072 0.93780 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.55 37.16 0.32 -1.72 16 2 C 0.06 1.11 1.63 -68.86 -0.11 1.00 16 3 H 0.09 1.77 6.49 -51.93 -0.34 1.43 16 4 C 0.53 10.29 5.75 -10.98 -0.06 10.23 16 5 O -0.53 -10.58 11.58 5.56 0.06 -10.51 16 6 N -0.53 -11.17 2.69 -114.74 -0.31 -11.48 16 7 C 0.23 5.12 4.10 -5.19 -0.02 5.10 16 8 C -0.54 -13.48 8.47 -34.44 -0.29 -13.77 16 9 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 10 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -23.29 13.29 55.43 0.74 -22.55 16 12 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 C 0.17 3.47 6.48 -83.69 -0.54 2.93 16 17 C -0.18 -3.47 9.05 -39.39 -0.36 -3.83 16 18 C -0.11 -1.81 10.04 -39.61 -0.40 -2.21 16 19 C -0.16 -2.54 10.04 -39.55 -0.40 -2.94 16 20 C -0.11 -1.79 10.04 -39.61 -0.40 -2.19 16 21 C -0.14 -2.82 9.05 -39.39 -0.36 -3.17 16 22 N -0.51 -7.93 3.37 -226.86 -0.76 -8.70 16 23 C 0.03 0.37 4.69 -3.39 -0.02 0.36 16 24 C 0.07 0.90 4.73 -25.48 -0.12 0.78 16 25 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 26 C -0.13 -1.51 6.24 -25.01 -0.16 -1.67 16 27 C -0.13 -1.67 6.24 -25.01 -0.16 -1.83 16 28 C 0.08 1.06 4.73 -25.44 -0.12 0.94 16 29 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 30 C 0.02 0.38 4.58 -3.36 -0.02 0.36 16 31 O -0.37 -5.62 11.25 -35.23 -0.40 -6.02 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.85 6.79 -51.92 -0.35 0.50 16 34 H 0.07 1.07 7.12 -51.93 -0.37 0.70 16 35 H 0.04 1.07 6.78 -51.93 -0.35 0.72 16 36 H 0.05 1.12 5.28 -51.93 -0.27 0.84 16 37 H 0.27 6.72 8.31 -40.82 -0.34 6.39 16 38 H 0.18 3.52 4.52 -56.27 -0.25 3.27 16 39 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 41 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.14 2.92 6.16 -52.49 -0.32 2.60 16 43 H 0.09 1.03 6.58 -51.93 -0.34 0.68 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.97 7.82 -51.93 -0.41 0.57 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 1.26 7.81 -51.93 -0.41 0.85 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.10 1.72 6.06 -51.93 -0.31 1.40 16 LS Contribution 381.58 15.07 5.75 5.75 Total: -1.00 -27.23 381.58 -10.74 -37.98 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -7.50 Total: 10.34 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -3.30 Total: -9.95 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.34 Total: -42.73 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.33 Total: -16.53 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.23 -10.74 -37.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372625264.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.746 kcal (2) G-P(sol) polarization free energy of solvation -27.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds