Wall clock time and date at job start Wed Apr 1 2020 04:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47158 * 2 1 4 4 C 1.46505 * 119.99959 * 270.00317 * 3 2 1 5 5 C 1.50700 * 109.47061 * 269.99640 * 4 3 2 6 6 H 1.08004 * 120.00222 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00127 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99886 * 179.97438 * 7 5 4 9 9 Si 1.86791 * 120.00053 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47443 * 90.00168 * 9 7 5 11 11 H 1.48496 * 109.47352 * 209.99981 * 9 7 5 12 12 H 1.48500 * 109.47182 * 330.00226 * 9 7 5 13 13 C 1.34778 * 119.99997 * 89.99891 * 3 2 1 14 14 O 1.21287 * 119.99639 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00030 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47128 * 179.79955 * 15 13 3 17 17 C 1.46902 * 111.00162 * 287.28031 * 16 15 13 18 18 C 1.53005 * 109.46901 * 158.21669 * 17 16 15 19 19 O 1.42901 * 109.47189 * 67.11541 * 18 17 16 20 20 C 1.42893 * 114.00072 * 179.97438 * 19 18 17 21 21 C 1.46899 * 110.99933 * 163.33018 * 16 15 13 22 22 H 1.09002 * 109.39399 * 174.73351 * 21 16 15 23 23 C 1.52580 * 109.38994 * 294.53566 * 21 16 15 24 24 C 1.52586 * 110.72712 * 190.82604 * 23 21 16 25 25 C 1.53098 * 109.95225 * 289.31986 * 24 23 21 26 26 S 1.81750 * 108.83835 * 63.02980 * 25 24 23 27 27 C 1.53102 * 109.39280 * 55.02819 * 21 16 15 28 28 H 1.09001 * 109.46736 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47153 * 300.00122 * 1 2 3 30 30 H 1.09004 * 109.46761 * 60.00161 * 1 2 3 31 31 H 1.09004 * 109.47058 * 240.00255 * 2 1 3 32 32 H 1.08999 * 109.47446 * 119.99883 * 2 1 3 33 33 H 1.08991 * 109.47361 * 29.99756 * 4 3 2 34 34 H 1.09001 * 109.47058 * 149.99714 * 4 3 2 35 35 H 0.97004 * 120.00170 * 180.02562 * 8 7 5 36 36 H 1.09011 * 109.46962 * 59.80417 * 15 13 3 37 37 H 1.08993 * 109.47431 * 299.80790 * 15 13 3 38 38 H 1.09000 * 109.47467 * 278.21921 * 17 16 15 39 39 H 1.09005 * 109.46781 * 38.22131 * 17 16 15 40 40 H 1.08995 * 109.46583 * 187.11319 * 18 17 16 41 41 H 1.08997 * 109.47195 * 307.11278 * 18 17 16 42 42 H 1.08997 * 109.47074 * 180.02562 * 20 19 18 43 43 H 1.08994 * 109.47245 * 300.00262 * 20 19 18 44 44 H 1.09000 * 109.46964 * 59.99789 * 20 19 18 45 45 H 1.09002 * 109.22871 * 70.50573 * 23 21 16 46 46 H 1.08999 * 109.22644 * 311.14438 * 23 21 16 47 47 H 1.09000 * 109.39047 * 169.17582 * 24 23 21 48 48 H 1.08991 * 109.39093 * 49.47226 * 24 23 21 49 49 H 1.08991 * 109.57944 * 303.21872 * 25 24 23 50 50 H 1.09004 * 109.57558 * 182.82826 * 25 24 23 51 51 H 1.08999 * 109.57335 * 57.01814 * 27 21 16 52 52 H 1.09004 * 109.57495 * 296.63828 * 27 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2310 -1.0958 7 6 4.1493 2.3906 -2.8775 8 7 5.3916 2.1844 -3.2569 9 14 3.0131 3.4360 -3.9287 10 1 3.1156 4.8561 -3.5069 11 1 3.4067 3.3138 -5.3553 12 1 1.6135 2.9693 -3.7596 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9912 1.3064 2.4722 16 7 2.3141 2.2047 3.5888 17 6 3.7668 2.3777 3.7223 18 6 4.0585 3.6742 4.4806 19 8 3.6105 3.5470 5.8316 20 6 3.8375 4.7094 6.6311 21 6 1.7245 1.7183 4.8433 22 1 2.0562 2.3494 5.6678 23 6 0.2030 1.7742 4.7430 24 6 -0.4373 1.5333 6.1069 25 6 -0.2570 0.0695 6.5175 26 16 1.5187 -0.2761 6.6937 27 6 2.1790 0.2779 5.0937 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5817 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1384 35 1 5.7179 2.5755 -4.0824 36 1 2.6186 0.4167 2.5287 37 1 0.9425 1.0157 2.5313 38 1 4.1843 1.5338 4.2715 39 1 4.2194 2.4264 2.7318 40 1 5.1311 3.8677 4.4701 41 1 3.5354 4.5013 4.0007 42 1 3.4703 4.5324 7.6419 43 1 4.9055 4.9240 6.6652 44 1 3.3101 5.5583 6.1959 45 1 -0.1391 1.0094 4.0458 46 1 -0.0966 2.7551 4.3741 47 1 -1.5009 1.7658 6.0535 48 1 0.0357 2.1779 6.8476 49 1 -0.6812 -0.5796 5.7516 50 1 -0.7595 -0.1077 7.4684 51 1 3.2681 0.2370 5.1141 52 1 1.8023 -0.3671 4.2999 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433196568.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:09 Heat of formation + Delta-G solvation = -70.184669 kcal Electronic energy + Delta-G solvation = -30310.322852 eV Core-core repulsion = 26436.613977 eV Total energy + Delta-G solvation = -3873.708875 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.92574 -38.42624 -37.38047 -35.46712 -34.77067 -32.74083 -30.86649 -30.46266 -29.89585 -27.92784 -27.45487 -26.40224 -25.62372 -23.18475 -22.98445 -22.32296 -21.28985 -19.91932 -18.32156 -17.40084 -16.93412 -16.52388 -16.25007 -16.09575 -15.76418 -15.32610 -15.19236 -14.77262 -14.58529 -14.27638 -14.15364 -13.77001 -13.64455 -13.60990 -13.45998 -13.38527 -12.98935 -12.56444 -12.31870 -12.23526 -12.07168 -11.91020 -11.73978 -11.58851 -11.51218 -11.36439 -11.32547 -11.16945 -10.97494 -10.82497 -10.74178 -10.51195 -10.46857 -10.15959 -9.96556 -9.55193 -9.52677 -8.99420 -8.59989 -8.32356 -7.70424 -7.69164 -6.10066 -4.08589 1.60927 2.36042 3.28073 3.34025 3.36103 3.37484 3.56198 3.80704 4.09032 4.38609 4.47006 4.59728 4.69557 4.77835 4.96694 5.01073 5.10426 5.17813 5.22331 5.23934 5.25527 5.26593 5.31764 5.34069 5.39005 5.45845 5.51097 5.54267 5.56549 5.60009 5.61719 5.68699 5.73857 5.84477 5.92436 5.95332 6.00800 6.11891 6.12691 6.29632 6.36726 6.69068 6.92242 7.03209 7.11525 7.21586 7.37485 7.60839 8.28137 8.46276 8.92137 9.03635 9.50785 11.03314 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.003323 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.455257 B = 8424.192294 C = 9666.523781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.522 6.522 15 C 0.029 3.971 16 N -0.503 5.503 17 C 0.058 3.942 18 C 0.070 3.930 19 O -0.389 6.389 20 C 0.032 3.968 21 C 0.080 3.920 22 H 0.127 0.873 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.083 4.083 26 S -0.261 6.261 27 C -0.114 4.114 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.100 0.900 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.037 0.963 44 H 0.040 0.960 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.102 0.898 51 H 0.104 0.896 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.137 -3.444 19.803 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.328 5.328 4 C 0.098 3.902 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.398 6.398 15 C -0.102 4.102 16 N -0.227 5.227 17 C -0.070 4.070 18 C -0.007 4.007 19 O -0.308 6.308 20 C -0.064 4.064 21 C -0.030 4.030 22 H 0.145 0.855 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.231 4.231 26 S -0.036 6.036 27 C -0.264 4.264 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.060 0.940 39 H 0.118 0.882 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.099 0.901 50 H 0.120 0.880 51 H 0.123 0.877 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.516 -2.932 20.456 23.187 hybrid contribution -0.550 0.289 -1.734 1.842 sum -11.067 -2.643 18.722 21.908 Atomic orbital electron populations 1.22236 0.96828 1.01506 1.02224 1.21421 0.93360 0.84052 1.02940 1.47945 1.64617 1.13263 1.07011 1.19609 0.97166 0.93370 0.80096 1.21327 0.95364 1.32808 1.07085 0.90876 1.24851 0.94973 0.95812 0.97359 1.69896 1.15133 1.45026 1.23610 0.86853 0.81483 0.81618 0.79745 1.19925 1.21124 1.19096 1.20174 0.78641 0.87096 0.84653 1.90660 1.44574 1.17667 1.86859 1.22162 1.02423 0.94629 0.90942 1.61881 1.11784 1.46748 1.02238 1.22248 0.87812 0.96057 1.00886 1.22560 0.97794 0.98797 0.81549 1.87812 1.82915 1.37607 1.22513 1.22673 0.99680 0.88600 0.95473 1.22364 0.94411 0.92328 0.93870 0.85519 1.21600 0.94366 1.03424 0.96670 1.21696 1.01461 0.94690 0.97821 1.23476 0.94474 0.99866 1.05322 1.86831 1.07581 1.84070 1.25089 1.24273 1.04553 1.01175 0.96349 0.92040 0.93083 0.92151 0.89743 0.91732 0.95422 0.94630 0.92588 0.92268 0.88455 0.93966 0.88200 0.93114 0.91659 0.90087 0.94448 0.94177 0.92262 0.89845 0.90808 0.90388 0.90055 0.87997 0.87740 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.11 1.60 5.93 -4.04 -0.02 1.58 16 3 N -0.60 -11.81 2.46 -175.06 -0.43 -12.24 16 4 C 0.22 5.24 4.23 -5.19 -0.02 5.22 16 5 C -0.53 -14.91 9.94 -34.44 -0.34 -15.25 16 6 H 0.07 2.26 8.06 -52.48 -0.42 1.84 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 9 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 13 C 0.51 9.94 7.19 -10.99 -0.08 9.86 16 14 O -0.52 -12.32 14.75 5.55 0.08 -12.24 16 15 C 0.03 0.42 2.75 -4.98 -0.01 0.41 16 16 N -0.50 -7.06 3.99 -228.27 -0.91 -7.97 16 17 C 0.06 0.83 4.91 -3.82 -0.02 0.81 16 18 C 0.07 0.94 6.26 37.16 0.23 1.17 16 19 O -0.39 -4.84 7.90 -35.23 -0.28 -5.12 16 20 C 0.03 0.31 11.01 101.05 1.11 1.42 16 21 C 0.08 0.92 1.93 -67.88 -0.13 0.79 16 22 H 0.13 1.61 5.13 -51.93 -0.27 1.35 16 23 C -0.12 -1.23 4.58 -27.16 -0.12 -1.36 16 24 C -0.12 -0.96 5.75 -26.89 -0.15 -1.11 16 25 C -0.08 -0.68 6.46 37.21 0.24 -0.44 16 26 S -0.26 -2.80 22.33 -107.50 -2.40 -5.20 16 27 C -0.11 -1.24 5.01 37.21 0.19 -1.06 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.59 7.22 -51.93 -0.38 0.21 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.06 0.82 6.44 -51.93 -0.33 0.49 16 33 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 34 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.06 0.79 6.49 -51.92 -0.34 0.45 16 37 H 0.10 1.21 5.13 -51.93 -0.27 0.94 16 38 H 0.04 0.56 6.04 -51.93 -0.31 0.25 16 39 H 0.10 1.73 6.52 -51.93 -0.34 1.39 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.58 6.64 -51.93 -0.34 0.23 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 49 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.10 1.22 6.30 -51.93 -0.33 0.89 16 52 H 0.08 0.85 6.92 -51.93 -0.36 0.49 16 LS Contribution 404.10 15.07 6.09 6.09 Total: -1.00 -32.94 404.10 -9.66 -42.60 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -9.07 Total: 1.62 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 1.15 Total: 2.35 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.57 Total: -46.91 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.20 Total: -17.36 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.40 Total: -5.20 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.94 -9.66 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433196568.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.584 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds