Wall clock time and date at job start Wed Apr 1 2020 04:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47158 * 2 1 4 4 C 1.46505 * 119.99959 * 270.00317 * 3 2 1 5 5 C 1.50700 * 109.47061 * 269.99640 * 4 3 2 6 6 H 1.08004 * 120.00222 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00127 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99886 * 179.97438 * 7 5 4 9 9 Si 1.86791 * 120.00053 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47443 * 90.00168 * 9 7 5 11 11 H 1.48496 * 109.47352 * 209.99981 * 9 7 5 12 12 H 1.48500 * 109.47182 * 330.00226 * 9 7 5 13 13 C 1.34778 * 119.99997 * 89.99891 * 3 2 1 14 14 O 1.21287 * 119.99639 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00030 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47128 * 179.79955 * 15 13 3 17 17 C 1.46902 * 111.00162 * 287.28031 * 16 15 13 18 18 C 1.53005 * 109.46901 * 158.21669 * 17 16 15 19 19 O 1.42901 * 109.47189 * 67.11541 * 18 17 16 20 20 C 1.42893 * 114.00072 * 179.97438 * 19 18 17 21 21 C 1.46899 * 110.99933 * 163.33018 * 16 15 13 22 22 H 1.09002 * 109.39399 * 174.73351 * 21 16 15 23 23 C 1.52580 * 109.38994 * 294.53566 * 21 16 15 24 24 C 1.52586 * 110.72712 * 190.82604 * 23 21 16 25 25 C 1.53098 * 109.95225 * 289.31986 * 24 23 21 26 26 S 1.81750 * 108.83835 * 63.02980 * 25 24 23 27 27 C 1.53102 * 109.39280 * 55.02819 * 21 16 15 28 28 H 1.09001 * 109.46736 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47153 * 300.00122 * 1 2 3 30 30 H 1.09004 * 109.46761 * 60.00161 * 1 2 3 31 31 H 1.09004 * 109.47058 * 240.00255 * 2 1 3 32 32 H 1.08999 * 109.47446 * 119.99883 * 2 1 3 33 33 H 1.08991 * 109.47361 * 29.99756 * 4 3 2 34 34 H 1.09001 * 109.47058 * 149.99714 * 4 3 2 35 35 H 0.97004 * 120.00170 * 180.02562 * 8 7 5 36 36 H 1.09011 * 109.46962 * 59.80417 * 15 13 3 37 37 H 1.08993 * 109.47431 * 299.80790 * 15 13 3 38 38 H 1.09000 * 109.47467 * 278.21921 * 17 16 15 39 39 H 1.09005 * 109.46781 * 38.22131 * 17 16 15 40 40 H 1.08995 * 109.46583 * 187.11319 * 18 17 16 41 41 H 1.08997 * 109.47195 * 307.11278 * 18 17 16 42 42 H 1.08997 * 109.47074 * 180.02562 * 20 19 18 43 43 H 1.08994 * 109.47245 * 300.00262 * 20 19 18 44 44 H 1.09000 * 109.46964 * 59.99789 * 20 19 18 45 45 H 1.09002 * 109.22871 * 70.50573 * 23 21 16 46 46 H 1.08999 * 109.22644 * 311.14438 * 23 21 16 47 47 H 1.09000 * 109.39047 * 169.17582 * 24 23 21 48 48 H 1.08991 * 109.39093 * 49.47226 * 24 23 21 49 49 H 1.08991 * 109.57944 * 303.21872 * 25 24 23 50 50 H 1.09004 * 109.57558 * 182.82826 * 25 24 23 51 51 H 1.08999 * 109.57335 * 57.01814 * 27 21 16 52 52 H 1.09004 * 109.57495 * 296.63828 * 27 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2310 -1.0958 7 6 4.1493 2.3906 -2.8775 8 7 5.3916 2.1844 -3.2569 9 14 3.0131 3.4360 -3.9287 10 1 3.1156 4.8561 -3.5069 11 1 3.4067 3.3138 -5.3553 12 1 1.6135 2.9693 -3.7596 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9912 1.3064 2.4722 16 7 2.3141 2.2047 3.5888 17 6 3.7668 2.3777 3.7223 18 6 4.0585 3.6742 4.4806 19 8 3.6105 3.5470 5.8316 20 6 3.8375 4.7094 6.6311 21 6 1.7245 1.7183 4.8433 22 1 2.0562 2.3494 5.6678 23 6 0.2030 1.7742 4.7430 24 6 -0.4373 1.5333 6.1069 25 6 -0.2570 0.0695 6.5175 26 16 1.5187 -0.2761 6.6937 27 6 2.1790 0.2779 5.0937 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5817 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1384 35 1 5.7179 2.5755 -4.0824 36 1 2.6186 0.4167 2.5287 37 1 0.9425 1.0157 2.5313 38 1 4.1843 1.5338 4.2715 39 1 4.2194 2.4264 2.7318 40 1 5.1311 3.8677 4.4701 41 1 3.5354 4.5013 4.0007 42 1 3.4703 4.5324 7.6419 43 1 4.9055 4.9240 6.6652 44 1 3.3101 5.5583 6.1959 45 1 -0.1391 1.0094 4.0458 46 1 -0.0966 2.7551 4.3741 47 1 -1.5009 1.7658 6.0535 48 1 0.0357 2.1779 6.8476 49 1 -0.6812 -0.5796 5.7516 50 1 -0.7595 -0.1077 7.4684 51 1 3.2681 0.2370 5.1141 52 1 1.8023 -0.3671 4.2999 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433196568.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:08 Heat of formation + Delta-G solvation = -91.903758 kcal Electronic energy + Delta-G solvation = -30311.264662 eV Core-core repulsion = 26436.613977 eV Total energy + Delta-G solvation = -3874.650685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.20939 -39.69265 -38.33938 -36.95503 -35.72521 -34.84706 -32.02232 -31.78524 -31.04087 -29.49850 -28.24374 -27.50079 -26.72058 -24.43966 -24.10235 -23.92512 -22.19173 -21.03447 -19.68801 -19.10339 -18.53143 -17.59814 -17.45979 -17.18967 -16.90866 -16.70743 -16.18438 -16.06524 -15.76587 -15.40735 -15.28323 -14.94997 -14.84419 -14.67449 -14.50211 -14.46725 -14.17324 -14.01980 -13.73652 -13.47292 -13.27422 -13.19483 -12.96476 -12.83838 -12.57302 -12.53059 -12.36468 -12.30280 -12.22165 -12.05687 -12.02228 -11.88727 -11.73856 -11.65673 -11.40260 -10.83140 -10.78488 -10.54454 -10.47881 -9.38405 -9.36044 -8.55349 -8.34090 -6.38487 0.83811 1.31804 1.35727 1.43976 1.61072 1.86131 2.21146 2.30496 2.84060 2.90753 3.00673 3.61318 3.69477 3.81302 3.97380 3.98026 4.06177 4.10935 4.14858 4.24432 4.29433 4.31776 4.39152 4.42588 4.49081 4.55716 4.58210 4.63051 4.63537 4.70857 4.77053 4.80500 4.83362 4.87087 4.90012 4.92768 5.00334 5.01570 5.06937 5.19016 5.25974 5.37130 5.39439 5.47612 5.67651 5.91877 6.07591 6.23847 6.26220 6.62685 6.77355 7.22883 7.50761 8.82806 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.003323 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.455257 B = 8424.192294 C = 9666.523781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.229 3.771 5 C -0.532 4.532 6 H 0.028 0.972 7 C 0.012 3.988 8 N -0.946 5.946 9 Si 0.946 3.054 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.239 1.239 13 C 0.499 3.501 14 O -0.573 6.573 15 C 0.046 3.954 16 N -0.516 5.516 17 C 0.061 3.939 18 C 0.078 3.922 19 O -0.396 6.396 20 C 0.027 3.973 21 C 0.086 3.914 22 H 0.116 0.884 23 C -0.120 4.120 24 C -0.111 4.111 25 C -0.073 4.073 26 S -0.293 6.293 27 C -0.106 4.106 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.016 0.984 35 H 0.268 0.732 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.100 0.900 43 H 0.045 0.955 44 H 0.040 0.960 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.071 0.929 49 H 0.093 0.907 50 H 0.118 0.882 51 H 0.092 0.908 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.381 -4.395 21.050 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.106 3.894 5 C -0.571 4.571 6 H 0.047 0.953 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.769 3.231 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.162 1.162 13 C 0.288 3.712 14 O -0.452 6.452 15 C -0.085 4.085 16 N -0.239 5.239 17 C -0.067 4.067 18 C 0.001 3.999 19 O -0.315 6.315 20 C -0.069 4.069 21 C -0.023 4.023 22 H 0.134 0.866 23 C -0.158 4.158 24 C -0.150 4.150 25 C -0.220 4.220 26 S -0.067 6.067 27 C -0.255 4.255 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.144 0.856 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.118 0.882 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.114 0.886 48 H 0.090 0.910 49 H 0.111 0.889 50 H 0.136 0.864 51 H 0.111 0.889 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.792 -3.934 21.736 26.041 hybrid contribution 0.531 0.559 -2.008 2.151 sum -13.261 -3.375 19.728 24.010 Atomic orbital electron populations 1.22155 0.93907 1.03595 1.02126 1.21743 0.95683 0.81323 1.03660 1.48056 1.64650 1.15041 1.05772 1.19230 0.94623 0.92924 0.82611 1.21561 0.97074 1.31880 1.06588 0.95341 1.25818 0.96638 0.97198 0.98958 1.70048 1.17378 1.46635 1.24518 0.85743 0.80521 0.79043 0.77815 1.20285 1.20079 1.16220 1.21125 0.77248 0.86760 0.86108 1.90629 1.46697 1.20121 1.87714 1.22050 1.04233 0.94061 0.88129 1.61853 1.11385 1.47401 1.03309 1.22094 0.88381 0.97053 0.99141 1.22361 0.97889 0.97499 0.82180 1.87794 1.82993 1.38939 1.21812 1.22867 1.00442 0.87759 0.95863 1.22329 0.95443 0.92473 0.92029 0.86621 1.21590 0.92962 1.03095 0.98179 1.21646 1.02448 0.94638 0.96283 1.23563 0.91940 0.99875 1.06662 1.86981 1.10522 1.84121 1.25090 1.24139 1.03929 1.00652 0.96829 0.88792 0.91986 0.93453 0.91068 0.89108 0.93682 0.96567 0.92339 0.90924 0.85619 0.92857 0.91806 0.92477 0.93662 0.88158 0.93632 0.94086 0.91277 0.91034 0.88636 0.91031 0.88854 0.86353 0.88930 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 10.24 71.98 0.74 -2.62 16 2 C 0.10 2.79 5.93 86.38 0.51 3.30 16 3 N -0.60 -23.88 2.46 -826.15 -2.03 -25.91 16 4 C 0.23 11.08 4.23 85.63 0.36 11.45 16 5 C -0.53 -31.23 9.94 25.60 0.25 -30.98 16 6 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 7 C 0.01 0.70 5.47 84.65 0.46 1.16 16 8 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 9 Si 0.95 44.65 27.47 68.60 1.88 46.54 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 13 C 0.50 19.73 7.19 87.65 0.63 20.36 16 14 O -0.57 -28.15 14.75 -3.05 -0.04 -28.20 16 15 C 0.05 1.26 2.75 85.55 0.24 1.49 16 16 N -0.52 -14.31 3.99 -876.13 -3.49 -17.80 16 17 C 0.06 1.83 4.91 86.30 0.42 2.26 16 18 C 0.08 2.16 6.26 71.98 0.45 2.61 16 19 O -0.40 -9.75 7.90 -148.98 -1.18 -10.93 16 20 C 0.03 0.49 11.01 113.37 1.25 1.74 16 21 C 0.09 1.86 1.93 44.81 0.09 1.95 16 22 H 0.12 2.83 5.13 -2.39 -0.01 2.82 16 23 C -0.12 -2.10 4.58 30.32 0.14 -1.97 16 24 C -0.11 -1.45 5.75 30.49 0.18 -1.27 16 25 C -0.07 -0.92 6.46 72.01 0.46 -0.46 16 26 S -0.29 -5.66 22.33 -56.49 -1.26 -6.92 16 27 C -0.11 -2.12 5.01 72.02 0.36 -1.76 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.18 7.22 -2.39 -0.02 1.16 16 30 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.07 2.21 8.07 -2.38 -0.02 2.19 16 32 H 0.09 2.08 6.44 -2.39 -0.02 2.07 16 33 H 0.05 2.03 7.13 -2.39 -0.02 2.01 16 34 H 0.02 0.85 6.85 -2.39 -0.02 0.84 16 35 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 36 H 0.07 1.83 6.49 -2.38 -0.02 1.81 16 37 H 0.13 2.73 5.13 -2.39 -0.01 2.71 16 38 H 0.05 1.44 6.04 -2.39 -0.01 1.43 16 39 H 0.06 2.37 6.52 -2.38 -0.02 2.35 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 42 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 1.07 6.64 -2.39 -0.02 1.06 16 46 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.07 1.06 8.06 -2.39 -0.02 1.04 16 49 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.09 2.08 6.30 -2.39 -0.02 2.07 16 52 H 0.09 1.62 6.92 -2.39 -0.02 1.60 16 Total: -1.00 -76.11 404.10 1.56 -74.55 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.84 Total: 20.95 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 6.54 Total: 7.25 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -5.22 Total: -103.26 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -1.22 Total: -39.13 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Atomic # 16 Polarization: -5.66 SS G_CDS: -1.26 Total: -6.92 kcal Total: -76.11 1.56 -74.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433196568.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.349 kcal (2) G-P(sol) polarization free energy of solvation -76.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds