Wall clock time and date at job start Wed Apr 1 2020 04:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47140 * 2 1 4 4 C 1.46502 * 119.99562 * 269.99453 * 3 2 1 5 5 C 1.50695 * 109.47408 * 269.99920 * 4 3 2 6 6 H 1.08005 * 120.00134 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00331 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99583 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00205 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47110 * 89.99891 * 9 7 5 11 11 H 1.48495 * 109.47018 * 209.99993 * 9 7 5 12 12 H 1.48501 * 109.47202 * 329.99991 * 9 7 5 13 13 C 1.34767 * 120.00253 * 89.99998 * 3 2 1 14 14 O 1.21285 * 120.00072 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00167 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47264 * 182.15718 * 15 13 3 17 17 C 1.46899 * 111.00020 * 196.98991 * 16 15 13 18 18 C 1.52998 * 109.47179 * 163.67833 * 17 16 15 19 19 O 1.42900 * 109.47377 * 95.01643 * 18 17 16 20 20 C 1.42904 * 114.00027 * 179.25383 * 19 18 17 21 21 C 1.46898 * 110.99875 * 73.03936 * 16 15 13 22 22 H 1.08998 * 109.39011 * 332.41946 * 21 16 15 23 23 C 1.52581 * 109.38835 * 212.62548 * 21 16 15 24 24 C 1.52630 * 110.70459 * 169.07555 * 23 21 16 25 25 C 1.53096 * 109.87028 * 70.81673 * 24 23 21 26 26 S 1.81746 * 108.84307 * 296.93660 * 25 24 23 27 27 C 1.53090 * 109.39469 * 92.22708 * 21 16 15 28 28 H 1.08996 * 109.47287 * 300.00196 * 1 2 3 29 29 H 1.09003 * 109.47064 * 60.00556 * 1 2 3 30 30 H 1.09004 * 109.47569 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47049 * 239.99359 * 2 1 3 32 32 H 1.09006 * 109.46843 * 119.99920 * 2 1 3 33 33 H 1.08995 * 109.47280 * 30.00265 * 4 3 2 34 34 H 1.09003 * 109.47022 * 149.99958 * 4 3 2 35 35 H 0.97006 * 119.99510 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.46890 * 62.16199 * 15 13 3 37 37 H 1.08995 * 109.47514 * 302.16234 * 15 13 3 38 38 H 1.09004 * 109.47205 * 43.67490 * 17 16 15 39 39 H 1.09002 * 109.47091 * 283.67415 * 17 16 15 40 40 H 1.09005 * 109.47094 * 215.01376 * 18 17 16 41 41 H 1.09000 * 109.47499 * 335.01594 * 18 17 16 42 42 H 1.08999 * 109.46952 * 299.99443 * 20 19 18 43 43 H 1.08997 * 109.47183 * 60.00090 * 20 19 18 44 44 H 1.09006 * 109.46891 * 179.97438 * 20 19 18 45 45 H 1.08999 * 109.22721 * 289.49312 * 23 21 16 46 46 H 1.09001 * 109.23078 * 48.85345 * 23 21 16 47 47 H 1.09005 * 109.46087 * 310.67963 * 24 23 21 48 48 H 1.08999 * 109.32363 * 190.87480 * 24 23 21 49 49 H 1.09006 * 109.57340 * 177.13447 * 25 24 23 50 50 H 1.09001 * 109.57942 * 56.75050 * 25 24 23 51 51 H 1.08998 * 109.57884 * 302.98213 * 27 21 16 52 52 H 1.09000 * 109.57796 * 63.23767 * 27 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1271 -3.6172 9 14 5.9136 2.0961 -3.4170 10 1 5.9762 0.8755 -4.2605 11 1 6.3931 3.2636 -4.1993 12 1 6.7737 1.9153 -2.2200 13 6 2.2429 2.0165 1.1671 14 8 2.6477 3.1599 1.1670 15 6 1.9912 1.3064 2.4722 16 7 2.2602 2.2230 3.5882 17 6 2.4211 1.4853 4.8483 18 6 3.0883 2.3893 5.8869 19 8 2.0849 3.0099 6.6930 20 6 2.6053 3.8669 7.7113 21 6 1.2033 3.2368 3.7031 22 1 0.7551 3.4049 2.7239 23 6 1.8065 4.5417 4.2146 24 6 0.8028 5.6849 4.0916 25 6 -0.3221 5.5019 5.1138 26 16 -1.2153 3.9651 4.7349 27 6 0.1291 2.7434 4.6760 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1409 -1.1386 35 1 3.6762 3.5181 -4.4428 36 1 2.6486 0.4401 2.5471 37 1 0.9525 0.9789 2.5133 38 1 3.0434 0.6067 4.6780 39 1 1.4430 1.1725 5.2137 40 1 3.7450 1.7924 6.5198 41 1 3.6724 3.1568 5.3790 42 1 3.2439 3.2901 8.3803 43 1 3.1878 4.6653 7.2516 44 1 1.7810 4.2994 8.2785 45 1 2.0890 4.4208 5.2604 46 1 2.6943 4.7806 3.6291 47 1 0.3810 5.6913 3.0865 48 1 1.3100 6.6317 4.2773 49 1 -1.0086 6.3468 5.0566 50 1 0.1016 5.4405 6.1162 51 1 -0.2624 1.7858 4.3328 52 1 0.5622 2.6260 5.6693 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433196569.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:12 Heat of formation + Delta-G solvation = -84.729355 kcal Electronic energy + Delta-G solvation = -30552.679110 eV Core-core repulsion = 26678.339530 eV Total energy + Delta-G solvation = -3874.339580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.22130 -39.92861 -38.03675 -36.80916 -35.92097 -34.88298 -31.82435 -31.44814 -31.25590 -29.22955 -28.28355 -27.42658 -26.44794 -24.69974 -24.39298 -23.82506 -22.24752 -20.90942 -19.83010 -18.60831 -18.39871 -17.94609 -17.32379 -17.18875 -17.00307 -16.47619 -16.33920 -15.95678 -15.87381 -15.60084 -15.30005 -14.91719 -14.71943 -14.52620 -14.33869 -14.16109 -14.08230 -13.91423 -13.59942 -13.28566 -13.12938 -13.07092 -12.89016 -12.87167 -12.69174 -12.57919 -12.48570 -12.33496 -12.29485 -12.16382 -11.89182 -11.85846 -11.70043 -11.49333 -11.45242 -10.71739 -10.63313 -10.53679 -10.44868 -9.41118 -9.32039 -8.54270 -8.20841 -6.35773 0.87046 1.35910 1.39257 1.49571 1.58767 1.94578 2.23965 2.41318 2.75878 3.05429 3.08416 3.64879 3.78094 3.87292 3.92281 3.97992 4.08416 4.10549 4.25565 4.30121 4.33488 4.35796 4.44394 4.46740 4.49990 4.51267 4.61278 4.64168 4.68490 4.76079 4.79331 4.84885 4.90480 4.93493 4.98049 4.98677 5.01019 5.06164 5.14076 5.23567 5.32361 5.37312 5.39979 5.60317 5.88149 5.96863 6.08804 6.11700 6.27734 6.73147 6.88915 7.31051 7.60750 8.86016 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013384 B = 0.003177 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.614459 B = 8810.796741 C = 9068.948961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 N -0.608 5.608 4 C 0.267 3.733 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.495 3.505 14 O -0.575 6.575 15 C 0.050 3.950 16 N -0.530 5.530 17 C 0.043 3.957 18 C 0.061 3.939 19 O -0.400 6.400 20 C 0.025 3.975 21 C 0.109 3.891 22 H 0.043 0.957 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.060 4.060 26 S -0.310 6.310 27 C -0.104 4.104 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.017 0.983 34 H -0.009 1.009 35 H 0.266 0.734 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.040 0.960 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.045 0.955 47 H 0.046 0.954 48 H 0.087 0.913 49 H 0.112 0.888 50 H 0.099 0.901 51 H 0.094 0.906 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 -5.007 24.423 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.021 4.021 3 N -0.340 5.340 4 C 0.145 3.855 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.283 3.717 14 O -0.454 6.454 15 C -0.081 4.081 16 N -0.255 5.255 17 C -0.084 4.084 18 C -0.016 4.016 19 O -0.320 6.320 20 C -0.071 4.071 21 C -0.001 4.001 22 H 0.061 0.939 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.208 4.208 26 S -0.084 6.084 27 C -0.252 4.252 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.035 0.965 34 H 0.009 0.991 35 H 0.075 0.925 36 H 0.144 0.856 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.113 0.887 45 H 0.117 0.883 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.105 0.895 49 H 0.130 0.870 50 H 0.118 0.882 51 H 0.112 0.888 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.815 -4.273 23.976 25.039 hybrid contribution 1.544 0.239 -0.909 1.808 sum -4.271 -4.035 23.067 23.804 Atomic orbital electron populations 1.22150 0.95043 1.03370 1.01288 1.21711 0.94904 0.81566 1.03939 1.48280 1.64485 1.15083 1.06194 1.18600 0.95130 0.91241 0.80490 1.21715 0.97857 1.31769 1.06401 0.92804 1.25881 1.02414 0.94503 0.96492 1.70071 1.37822 1.34310 1.14829 0.85406 0.78996 0.78146 0.78200 1.18756 1.20779 1.19691 1.21201 0.77457 0.86808 0.86200 1.90635 1.46743 1.20314 1.87741 1.22026 1.02690 0.95488 0.87885 1.61867 1.45176 1.14683 1.03730 1.22505 1.02098 0.96138 0.87658 1.22640 0.90657 0.96227 0.92050 1.87717 1.33695 1.63415 1.47206 1.22873 1.00566 0.93385 0.90278 1.21596 0.89011 0.92880 0.96590 0.93875 1.21649 0.97933 0.92813 1.03045 1.21698 0.96102 0.99650 0.98385 1.23406 0.99603 0.95738 1.02070 1.86813 1.18958 1.08108 1.94523 1.24502 0.96079 0.98394 1.06245 0.92725 0.94571 0.88536 0.91003 0.88014 0.96533 0.99053 0.92516 0.85586 0.90217 0.87408 0.91288 0.90526 0.93120 0.92792 0.94112 0.88728 0.88322 0.93633 0.93530 0.89488 0.86967 0.88227 0.88813 0.84555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 10.21 71.98 0.74 -3.38 16 2 C 0.10 3.08 5.90 86.38 0.51 3.59 16 3 N -0.61 -26.11 2.46 -826.18 -2.03 -28.14 16 4 C 0.27 14.81 5.16 85.63 0.44 15.25 16 5 C -0.54 -31.65 9.39 25.60 0.24 -31.41 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.33 5.46 84.66 0.46 0.80 16 8 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 9 Si 0.97 45.64 29.54 68.60 2.03 47.67 16 10 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 13 C 0.50 20.80 7.10 87.66 0.62 21.42 16 14 O -0.58 -30.32 15.07 -3.04 -0.05 -30.36 16 15 C 0.05 1.38 3.90 85.56 0.33 1.72 16 16 N -0.53 -14.29 3.86 -876.17 -3.38 -17.67 16 17 C 0.04 0.78 5.16 86.30 0.45 1.22 16 18 C 0.06 1.02 5.21 71.98 0.38 1.40 16 19 O -0.40 -6.58 5.96 -148.98 -0.89 -7.47 16 20 C 0.02 0.29 10.55 113.37 1.20 1.49 16 21 C 0.11 3.11 1.31 44.81 0.06 3.16 16 22 H 0.04 1.61 6.68 -2.39 -0.02 1.59 16 23 C -0.12 -3.21 4.26 30.33 0.13 -3.08 16 24 C -0.12 -2.97 5.76 30.50 0.18 -2.79 16 25 C -0.06 -1.24 6.45 72.01 0.46 -0.78 16 26 S -0.31 -7.78 22.33 -56.49 -1.26 -9.04 16 27 C -0.10 -2.41 4.33 72.01 0.31 -2.09 16 28 H 0.05 1.34 7.17 -2.39 -0.02 1.32 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 2.33 8.07 -2.39 -0.02 2.32 16 32 H 0.10 2.29 6.50 -2.38 -0.02 2.27 16 33 H 0.02 0.95 8.07 -2.39 -0.02 0.93 16 34 H -0.01 -0.56 7.42 -2.39 -0.02 -0.58 16 35 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 36 H 0.13 2.77 7.07 -2.38 -0.02 2.75 16 37 H 0.08 1.88 6.70 -2.39 -0.02 1.87 16 38 H 0.11 1.51 7.71 -2.38 -0.02 1.49 16 39 H 0.07 1.13 5.38 -2.39 -0.01 1.12 16 40 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.05 1.07 6.97 -2.39 -0.02 1.06 16 42 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.04 0.50 7.99 -2.39 -0.02 0.48 16 44 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.10 2.27 3.80 -2.39 -0.01 2.26 16 46 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.05 1.42 8.05 -2.38 -0.02 1.40 16 48 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 50 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.09 2.07 7.58 -2.39 -0.02 2.05 16 52 H 0.14 2.87 3.62 -2.39 -0.01 2.86 16 Total: -1.00 -77.88 402.16 2.10 -75.78 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.89 Total: 20.00 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.50 Total: 6.52 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -5.12 Total: -103.09 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.93 Total: -37.83 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: -7.78 SS G_CDS: -1.26 Total: -9.04 kcal Total: -77.88 2.10 -75.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433196569.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.952 kcal (2) G-P(sol) polarization free energy of solvation -77.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds