Wall clock time and date at job start Wed Apr 1 2020 03:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47364 * 2 1 4 4 C 1.53007 * 109.46999 * 239.99990 * 2 1 3 5 5 N 1.46505 * 109.46899 * 64.99907 * 4 2 1 6 6 S 1.65597 * 119.99820 * 164.99849 * 5 4 2 7 7 O 1.42093 * 104.27850 * 181.07146 * 6 5 4 8 8 O 1.42101 * 104.27886 * 308.93082 * 6 5 4 9 9 C 1.81398 * 104.44828 * 65.00028 * 6 5 4 10 10 C 1.53007 * 109.47357 * 173.81069 * 9 6 5 11 11 C 1.50701 * 115.54739 * 65.19608 * 10 9 6 12 12 H 1.08005 * 119.99889 * 264.79083 * 11 10 9 13 13 C 1.37874 * 120.00178 * 84.78665 * 11 10 9 14 14 N 1.31511 * 119.99690 * 352.23116 * 13 11 10 15 15 Si 1.86804 * 119.99924 * 172.23497 * 13 11 10 16 16 H 1.48499 * 109.47337 * 89.99773 * 15 13 11 17 17 H 1.48499 * 109.46746 * 210.00260 * 15 13 11 18 18 H 1.48501 * 109.47151 * 329.99474 * 15 13 11 19 19 C 1.52993 * 117.49756 * 279.53009 * 10 9 6 20 20 C 1.52997 * 117.50298 * 210.86639 * 10 9 6 21 21 C 1.53002 * 109.47166 * 120.00217 * 2 1 3 22 22 N 1.46901 * 109.46686 * 294.99728 * 21 2 1 23 23 C 1.46843 * 111.00055 * 294.20736 * 22 21 2 24 24 C 1.53040 * 109.52012 * 174.16154 * 23 22 21 25 25 C 1.53114 * 109.27685 * 59.18289 * 24 23 22 26 26 C 1.53122 * 109.16376 * 302.34516 * 25 24 23 27 27 C 1.46849 * 110.99471 * 169.99886 * 22 21 2 28 28 H 1.08998 * 109.47364 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47192 * 300.00161 * 1 2 3 30 30 H 1.09001 * 109.46977 * 59.99926 * 1 2 3 31 31 H 1.08999 * 109.46854 * 184.99945 * 4 2 1 32 32 H 1.08996 * 109.47260 * 305.00313 * 4 2 1 33 33 H 0.96996 * 120.00068 * 345.00037 * 5 4 2 34 34 H 1.08998 * 109.47248 * 293.81234 * 9 6 5 35 35 H 1.08996 * 109.47066 * 53.81320 * 9 6 5 36 36 H 0.97003 * 119.99358 * 185.02753 * 14 13 11 37 37 H 1.09005 * 117.50304 * 359.97438 * 19 10 9 38 38 H 1.09001 * 117.49869 * 145.01736 * 19 10 9 39 39 H 1.08997 * 117.49732 * 214.98009 * 20 10 9 40 40 H 1.09004 * 117.49709 * 359.97293 * 20 10 9 41 41 H 1.08995 * 109.47010 * 54.99662 * 21 2 1 42 42 H 1.09005 * 109.46855 * 174.99725 * 21 2 1 43 43 H 1.08994 * 109.46782 * 294.17955 * 23 22 21 44 44 H 1.09000 * 109.46299 * 54.15282 * 23 22 21 45 45 H 1.09001 * 109.50345 * 299.24120 * 24 23 22 46 46 H 1.09003 * 109.50304 * 179.12225 * 24 23 22 47 47 H 1.09002 * 109.52590 * 182.43865 * 25 24 23 48 48 H 1.09006 * 109.57636 * 62.28285 * 25 24 23 49 49 H 1.09004 * 109.50008 * 297.71259 * 26 25 24 50 50 H 1.09001 * 109.50500 * 177.59727 * 26 25 24 51 51 H 1.08997 * 109.46499 * 305.85697 * 27 22 21 52 52 H 1.09004 * 109.46216 * 65.82449 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6524 0.0354 -2.4424 6 16 2.3698 -0.2906 -3.8989 7 8 1.7749 0.6353 -4.7976 8 8 3.7627 -0.2497 -3.6204 9 6 1.8486 -1.9832 -4.2914 10 6 2.3249 -2.3503 -5.6983 11 6 3.8191 -2.4241 -5.8801 12 1 4.3602 -1.5686 -6.2567 13 6 4.4953 -3.5837 -5.5655 14 7 3.8655 -4.5701 -4.9657 15 14 6.3063 -3.7535 -5.9912 16 1 7.1296 -3.2602 -4.8580 17 1 6.6225 -5.1815 -6.2480 18 1 6.6063 -2.9539 -7.2060 19 6 1.4936 -1.8458 -6.8795 20 6 1.4663 -3.3290 -6.5020 21 6 2.0400 -0.7213 1.2492 22 7 1.6514 0.0374 2.4456 23 6 2.3293 1.3394 2.4863 24 6 1.7932 2.1585 3.6626 25 6 2.0395 1.3930 4.9655 26 6 1.3640 0.0216 4.8782 27 6 1.9124 -0.7355 3.6666 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.1263 -0.7995 -1.2056 32 1 1.6053 -1.7198 -1.2953 33 1 0.9755 0.7273 -2.3793 34 1 2.2832 -2.6740 -3.5689 35 1 0.7614 -2.0480 -4.2474 36 1 4.3566 -5.3559 -4.6789 37 1 0.6072 -1.2527 -6.6544 38 1 2.0274 -1.5676 -7.7883 39 1 1.9822 -4.0260 -7.1624 40 1 0.5623 -3.7118 -6.0282 41 1 1.6054 -1.7198 1.2951 42 1 3.1264 -0.7995 1.2055 43 1 3.4016 1.1870 2.6086 44 1 2.1426 1.8753 1.5556 45 1 0.7234 2.3232 3.5339 46 1 2.3077 3.1187 3.7019 47 1 1.6206 1.9528 5.8018 48 1 3.1113 1.2622 5.1153 49 1 0.2874 0.1526 4.7687 50 1 1.5717 -0.5449 5.7860 51 1 1.4230 -1.7067 3.5933 52 1 2.9867 -0.8783 3.7834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451083661.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:58 Heat of formation + Delta-G solvation = -66.199446 kcal Electronic energy + Delta-G solvation = -29254.179230 eV Core-core repulsion = 25380.643167 eV Total energy + Delta-G solvation = -3873.536063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.47758 -36.94649 -36.73327 -36.16779 -35.04309 -33.88989 -32.03930 -31.45668 -30.96519 -28.14266 -26.82564 -25.55841 -25.41892 -23.45157 -22.88723 -21.20306 -20.26789 -19.89329 -19.58543 -18.59319 -16.97361 -16.71422 -16.35902 -15.64175 -15.36164 -15.17750 -14.91543 -14.72286 -14.70624 -14.29925 -14.17022 -13.81732 -13.75205 -13.36736 -13.20067 -13.02935 -12.85785 -12.51996 -12.07979 -11.92497 -11.82388 -11.56197 -11.47949 -11.29681 -11.24960 -11.10489 -11.08045 -10.99861 -10.93922 -10.90843 -10.81376 -10.57561 -10.56278 -10.44706 -10.35948 -10.10455 -9.71544 -9.15549 -8.94545 -8.55819 -8.51018 -8.07941 -6.13764 -4.23905 1.11658 3.30685 3.36128 3.41474 3.44938 3.69302 4.37433 4.49928 4.52439 4.56667 4.63598 4.75279 4.86305 4.93327 4.98889 5.06854 5.14676 5.16704 5.21052 5.23453 5.33510 5.37655 5.42563 5.49461 5.53459 5.61244 5.64763 5.64922 5.71711 5.72866 5.82633 5.86583 5.89811 5.95751 5.99864 6.08031 6.11953 6.25207 6.30217 6.33832 6.39111 6.62516 6.73275 6.87324 6.89526 6.99482 7.24251 7.33528 7.39984 7.80780 8.21311 8.81418 9.47031 10.93880 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015458 B = 0.002634 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.943114 B =10628.322160 C =11372.304477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.079 0.921 4 C 0.120 3.880 5 N -1.132 6.132 6 S 2.608 3.392 7 O -0.976 6.976 8 O -0.952 6.952 9 C -0.554 4.554 10 C 0.044 3.956 11 C -0.515 4.515 12 H 0.068 0.932 13 C 0.082 3.918 14 N -0.875 5.875 15 Si 0.891 3.109 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.270 1.270 19 C -0.208 4.208 20 C -0.142 4.142 21 C 0.058 3.942 22 N -0.534 5.534 23 C 0.049 3.951 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.116 4.116 27 C 0.055 3.945 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.408 0.592 34 H 0.133 0.867 35 H 0.099 0.901 36 H 0.263 0.737 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.039 0.961 43 H 0.032 0.968 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.070 0.930 50 H 0.064 0.936 51 H 0.074 0.926 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.420 7.660 18.551 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 H 0.097 0.903 4 C -0.007 4.007 5 N -0.889 5.889 6 S 2.705 3.295 7 O -0.966 6.966 8 O -0.942 6.942 9 C -0.687 4.687 10 C 0.041 3.959 11 C -0.553 4.553 12 H 0.086 0.914 13 C -0.123 4.123 14 N -0.510 5.510 15 Si 0.718 3.282 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.194 1.194 19 C -0.246 4.246 20 C -0.181 4.181 21 C -0.070 4.070 22 N -0.259 5.259 23 C -0.079 4.079 24 C -0.154 4.154 25 C -0.160 4.160 26 C -0.154 4.154 27 C -0.073 4.073 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.241 0.759 34 H 0.151 0.849 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.083 0.917 51 H 0.093 0.907 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.190 8.001 18.086 21.043 hybrid contribution 1.157 -0.788 0.177 1.411 sum -6.033 7.213 18.263 20.542 Atomic orbital electron populations 1.21733 0.94089 1.02063 1.01703 1.21347 0.97257 1.00173 0.92668 0.90316 1.21252 1.00554 0.94560 0.84352 1.55953 1.58006 1.50189 1.24752 1.05082 0.74536 0.77800 0.72077 1.93500 1.78826 1.61081 1.63215 1.93529 1.30722 1.86956 1.82942 1.29971 1.07836 1.21433 1.09445 1.18275 0.93306 1.00718 0.83584 1.20526 0.89193 0.99396 1.46137 0.91382 1.24948 0.98380 0.95123 0.93852 1.69980 1.35881 1.07504 1.37645 0.86586 0.84941 0.77171 0.79517 1.20060 1.21088 1.19441 1.23197 1.02193 0.97772 1.01397 1.22551 1.00263 0.91182 1.04087 1.22124 0.98426 0.97407 0.89079 1.61884 1.58453 1.03706 1.01807 1.22180 0.95738 0.90616 0.99357 1.21576 1.01989 0.97831 0.94001 1.21584 1.00415 0.96314 0.97663 1.21575 1.01029 0.95853 0.96920 1.22080 0.98622 0.96881 0.89741 0.92715 0.91485 0.93107 0.90318 0.91737 0.75862 0.84917 0.88263 0.92772 0.90672 0.89547 0.89609 0.91542 0.90183 0.94258 0.94929 0.90242 0.91118 0.91715 0.91993 0.92400 0.91110 0.91746 0.90711 0.94998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.95 37.16 0.33 -1.00 16 2 C -0.09 -0.99 2.42 -90.61 -0.22 -1.21 16 3 H 0.08 0.84 6.22 -51.93 -0.32 0.51 16 4 C 0.12 1.57 5.52 -4.04 -0.02 1.55 16 5 N -1.13 -16.66 5.76 -10.61 -0.06 -16.73 16 6 S 2.61 52.47 5.19 -107.50 -0.56 51.91 16 7 O -0.98 -21.47 18.08 -57.54 -1.04 -22.51 16 8 O -0.95 -22.67 17.17 -57.54 -0.99 -23.66 16 9 C -0.55 -11.54 5.93 37.16 0.22 -11.32 16 10 C 0.04 1.06 1.32 -155.66 -0.21 0.85 16 11 C -0.52 -14.12 8.18 -34.44 -0.28 -14.40 16 12 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 13 C 0.08 2.23 5.38 -17.82 -0.10 2.13 16 14 N -0.87 -23.93 12.98 55.43 0.72 -23.21 16 15 Si 0.89 21.38 29.55 -169.99 -5.02 16.36 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.21 -4.60 9.96 -26.70 -0.27 -4.87 16 20 C -0.14 -3.23 9.49 -26.69 -0.25 -3.49 16 21 C 0.06 0.57 4.35 -3.82 -0.02 0.55 16 22 N -0.53 -4.86 4.11 -234.67 -0.96 -5.82 16 23 C 0.05 0.43 5.30 -3.83 -0.02 0.41 16 24 C -0.12 -0.86 6.09 -26.65 -0.16 -1.03 16 25 C -0.12 -0.84 6.00 -26.61 -0.16 -1.00 16 26 C -0.12 -0.81 6.09 -26.65 -0.16 -0.98 16 27 C 0.05 0.45 5.46 -3.83 -0.02 0.43 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.64 7.75 -51.93 -0.40 0.23 16 30 H 0.05 0.48 6.90 -51.93 -0.36 0.12 16 31 H 0.08 1.13 7.69 -51.93 -0.40 0.73 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.41 5.12 7.37 -34.47 -0.25 4.87 16 34 H 0.13 2.85 8.14 -51.93 -0.42 2.43 16 35 H 0.10 1.75 8.09 -51.93 -0.42 1.33 16 36 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 39 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.08 0.74 7.99 -51.93 -0.41 0.33 16 42 H 0.04 0.41 8.12 -51.93 -0.42 -0.02 16 43 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.72 6.12 -51.93 -0.32 0.40 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.07 0.58 8.01 -51.93 -0.42 0.17 16 52 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 417.16 15.07 6.29 6.29 Total: -1.00 -32.07 417.16 -12.58 -44.65 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -9.62 Total: 6.08 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: -1.33 Total: -33.37 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: -0.31 Total: -45.75 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -2.03 Total: -46.17 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 52.47 SS G_CDS: -0.56 Total: 51.91 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.07 -12.58 -44.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451083661.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.553 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds