Wall clock time and date at job start Wed Apr 1 2020 03:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47364 * 2 1 4 4 C 1.53007 * 109.46999 * 239.99990 * 2 1 3 5 5 N 1.46505 * 109.46899 * 64.99907 * 4 2 1 6 6 S 1.65597 * 119.99820 * 164.99849 * 5 4 2 7 7 O 1.42093 * 104.27850 * 181.07146 * 6 5 4 8 8 O 1.42101 * 104.27886 * 308.93082 * 6 5 4 9 9 C 1.81398 * 104.44828 * 65.00028 * 6 5 4 10 10 C 1.53007 * 109.47357 * 173.81069 * 9 6 5 11 11 C 1.50701 * 115.54739 * 65.19608 * 10 9 6 12 12 H 1.08005 * 119.99889 * 264.79083 * 11 10 9 13 13 C 1.37874 * 120.00178 * 84.78665 * 11 10 9 14 14 N 1.31511 * 119.99690 * 352.23116 * 13 11 10 15 15 Si 1.86804 * 119.99924 * 172.23497 * 13 11 10 16 16 H 1.48499 * 109.47337 * 89.99773 * 15 13 11 17 17 H 1.48499 * 109.46746 * 210.00260 * 15 13 11 18 18 H 1.48501 * 109.47151 * 329.99474 * 15 13 11 19 19 C 1.52993 * 117.49756 * 279.53009 * 10 9 6 20 20 C 1.52997 * 117.50298 * 210.86639 * 10 9 6 21 21 C 1.53002 * 109.47166 * 120.00217 * 2 1 3 22 22 N 1.46901 * 109.46686 * 294.99728 * 21 2 1 23 23 C 1.46843 * 111.00055 * 294.20736 * 22 21 2 24 24 C 1.53040 * 109.52012 * 174.16154 * 23 22 21 25 25 C 1.53114 * 109.27685 * 59.18289 * 24 23 22 26 26 C 1.53122 * 109.16376 * 302.34516 * 25 24 23 27 27 C 1.46849 * 110.99471 * 169.99886 * 22 21 2 28 28 H 1.08998 * 109.47364 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47192 * 300.00161 * 1 2 3 30 30 H 1.09001 * 109.46977 * 59.99926 * 1 2 3 31 31 H 1.08999 * 109.46854 * 184.99945 * 4 2 1 32 32 H 1.08996 * 109.47260 * 305.00313 * 4 2 1 33 33 H 0.96996 * 120.00068 * 345.00037 * 5 4 2 34 34 H 1.08998 * 109.47248 * 293.81234 * 9 6 5 35 35 H 1.08996 * 109.47066 * 53.81320 * 9 6 5 36 36 H 0.97003 * 119.99358 * 185.02753 * 14 13 11 37 37 H 1.09005 * 117.50304 * 359.97438 * 19 10 9 38 38 H 1.09001 * 117.49869 * 145.01736 * 19 10 9 39 39 H 1.08997 * 117.49732 * 214.98009 * 20 10 9 40 40 H 1.09004 * 117.49709 * 359.97293 * 20 10 9 41 41 H 1.08995 * 109.47010 * 54.99662 * 21 2 1 42 42 H 1.09005 * 109.46855 * 174.99725 * 21 2 1 43 43 H 1.08994 * 109.46782 * 294.17955 * 23 22 21 44 44 H 1.09000 * 109.46299 * 54.15282 * 23 22 21 45 45 H 1.09001 * 109.50345 * 299.24120 * 24 23 22 46 46 H 1.09003 * 109.50304 * 179.12225 * 24 23 22 47 47 H 1.09002 * 109.52590 * 182.43865 * 25 24 23 48 48 H 1.09006 * 109.57636 * 62.28285 * 25 24 23 49 49 H 1.09004 * 109.50008 * 297.71259 * 26 25 24 50 50 H 1.09001 * 109.50500 * 177.59727 * 26 25 24 51 51 H 1.08997 * 109.46499 * 305.85697 * 27 22 21 52 52 H 1.09004 * 109.46216 * 65.82449 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6524 0.0354 -2.4424 6 16 2.3698 -0.2906 -3.8989 7 8 1.7749 0.6353 -4.7976 8 8 3.7627 -0.2497 -3.6204 9 6 1.8486 -1.9832 -4.2914 10 6 2.3249 -2.3503 -5.6983 11 6 3.8191 -2.4241 -5.8801 12 1 4.3602 -1.5686 -6.2567 13 6 4.4953 -3.5837 -5.5655 14 7 3.8655 -4.5701 -4.9657 15 14 6.3063 -3.7535 -5.9912 16 1 7.1296 -3.2602 -4.8580 17 1 6.6225 -5.1815 -6.2480 18 1 6.6063 -2.9539 -7.2060 19 6 1.4936 -1.8458 -6.8795 20 6 1.4663 -3.3290 -6.5020 21 6 2.0400 -0.7213 1.2492 22 7 1.6514 0.0374 2.4456 23 6 2.3293 1.3394 2.4863 24 6 1.7932 2.1585 3.6626 25 6 2.0395 1.3930 4.9655 26 6 1.3640 0.0216 4.8782 27 6 1.9124 -0.7355 3.6666 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.1263 -0.7995 -1.2056 32 1 1.6053 -1.7198 -1.2953 33 1 0.9755 0.7273 -2.3793 34 1 2.2832 -2.6740 -3.5689 35 1 0.7614 -2.0480 -4.2474 36 1 4.3566 -5.3559 -4.6789 37 1 0.6072 -1.2527 -6.6544 38 1 2.0274 -1.5676 -7.7883 39 1 1.9822 -4.0260 -7.1624 40 1 0.5623 -3.7118 -6.0282 41 1 1.6054 -1.7198 1.2951 42 1 3.1264 -0.7995 1.2055 43 1 3.4016 1.1870 2.6086 44 1 2.1426 1.8753 1.5556 45 1 0.7234 2.3232 3.5339 46 1 2.3077 3.1187 3.7019 47 1 1.6206 1.9528 5.8018 48 1 3.1113 1.2622 5.1153 49 1 0.2874 0.1526 4.7687 50 1 1.5717 -0.5449 5.7860 51 1 1.4230 -1.7067 3.5933 52 1 2.9867 -0.8783 3.7834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451083661.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:57 Heat of formation + Delta-G solvation = -87.019520 kcal Electronic energy + Delta-G solvation = -29255.082056 eV Core-core repulsion = 25380.643167 eV Total energy + Delta-G solvation = -3874.438889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.18326 -38.55828 -38.04347 -37.70985 -36.76431 -34.77514 -34.08325 -32.29569 -31.63786 -29.83567 -27.62242 -27.48832 -26.44537 -24.10372 -23.61892 -22.98394 -21.57508 -20.97623 -20.52202 -20.15861 -18.42663 -18.32475 -17.66136 -16.80773 -16.77564 -16.59790 -16.22500 -15.83536 -15.78929 -15.43415 -15.29806 -15.09272 -14.85992 -14.47700 -14.14694 -13.99746 -13.74600 -13.72883 -13.61786 -13.20260 -13.12016 -12.97687 -12.89390 -12.86668 -12.85525 -12.68337 -12.43176 -12.21395 -12.10250 -12.04681 -11.91996 -11.83993 -11.72477 -11.55175 -11.52455 -11.22122 -11.05281 -10.86838 -10.54972 -10.45519 -9.85475 -9.24186 -8.19383 -6.33563 -0.48559 1.37853 1.40302 1.48757 2.05781 2.39322 2.90166 2.98192 3.08002 3.39359 3.48046 3.80368 3.87771 3.94577 3.98760 4.03503 4.08799 4.13737 4.32245 4.35195 4.45560 4.50465 4.53421 4.56902 4.59751 4.63262 4.66812 4.72517 4.78736 4.85311 4.88198 4.93410 4.98652 4.98919 5.02845 5.09816 5.10441 5.21415 5.23048 5.26418 5.32232 5.39839 5.48117 5.50475 5.54548 5.59654 5.71973 6.14133 6.18875 6.21561 6.23513 6.72198 7.38387 8.87531 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015458 B = 0.002634 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.943114 B =10628.322160 C =11372.304477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.077 0.923 4 C 0.112 3.888 5 N -1.112 6.112 6 S 2.625 3.375 7 O -0.996 6.996 8 O -0.995 6.995 9 C -0.551 4.551 10 C 0.011 3.989 11 C -0.535 4.535 12 H 0.047 0.953 13 C 0.043 3.957 14 N -0.890 5.890 15 Si 0.934 3.066 16 H -0.277 1.277 17 H -0.273 1.273 18 H -0.270 1.270 19 C -0.197 4.197 20 C -0.138 4.138 21 C 0.059 3.941 22 N -0.534 5.534 23 C 0.046 3.954 24 C -0.113 4.113 25 C -0.122 4.122 26 C -0.112 4.112 27 C 0.052 3.948 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.422 0.578 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.265 0.735 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.029 0.971 43 H 0.023 0.977 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.054 0.946 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.079 0.921 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.876 7.820 19.881 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.095 0.905 4 C -0.014 4.014 5 N -0.874 5.874 6 S 2.722 3.278 7 O -0.986 6.986 8 O -0.985 6.985 9 C -0.684 4.684 10 C 0.009 3.991 11 C -0.572 4.572 12 H 0.066 0.934 13 C -0.160 4.160 14 N -0.526 5.526 15 Si 0.759 3.241 16 H -0.203 1.203 17 H -0.198 1.198 18 H -0.195 1.195 19 C -0.235 4.235 20 C -0.177 4.177 21 C -0.070 4.070 22 N -0.259 5.259 23 C -0.082 4.082 24 C -0.151 4.151 25 C -0.159 4.159 26 C -0.150 4.150 27 C -0.076 4.076 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.258 0.742 34 H 0.142 0.858 35 H 0.153 0.847 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.073 0.927 49 H 0.087 0.913 50 H 0.094 0.906 51 H 0.097 0.903 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.654 8.168 19.407 22.765 hybrid contribution 1.592 -0.814 -0.209 1.800 sum -7.062 7.354 19.199 21.738 Atomic orbital electron populations 1.21702 0.92969 1.02425 1.02047 1.21262 0.98009 0.99736 0.91568 0.90479 1.21466 0.99904 0.95493 0.84570 1.55415 1.57926 1.50585 1.23484 1.04282 0.73656 0.77241 0.72636 1.93461 1.78873 1.61573 1.64742 1.93476 1.33758 1.87398 1.83882 1.29857 1.09995 1.21424 1.07102 1.18408 0.92189 1.02696 0.85845 1.20702 0.91312 0.98918 1.46316 0.93446 1.25500 1.01404 0.95085 0.93980 1.70016 1.36837 1.07703 1.38077 0.85920 0.81468 0.77634 0.79053 1.20267 1.19782 1.19512 1.23248 1.02358 0.97565 1.00284 1.22513 1.00519 0.91173 1.03533 1.22089 0.97846 0.97794 0.89226 1.61918 1.58285 1.03795 1.01856 1.22221 0.95309 0.90736 0.99904 1.21560 1.01851 0.98002 0.93675 1.21590 1.00310 0.96330 0.97694 1.21560 1.00766 0.95911 0.96780 1.22155 0.98402 0.97245 0.89811 0.92332 0.91135 0.92748 0.91996 0.90319 0.74188 0.85810 0.84724 0.92535 0.88237 0.90045 0.91588 0.89294 0.89511 0.95283 0.95830 0.90619 0.91230 0.90978 0.90877 0.92701 0.91272 0.90578 0.90266 0.95619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.95 71.98 0.64 -1.63 16 2 C -0.09 -1.67 2.42 -10.79 -0.03 -1.70 16 3 H 0.08 1.55 6.22 -2.39 -0.01 1.53 16 4 C 0.11 2.82 5.52 86.38 0.48 3.29 16 5 N -1.11 -31.24 5.76 -187.47 -1.08 -32.32 16 6 S 2.62 104.18 5.19 -56.49 -0.29 103.89 16 7 O -1.00 -42.90 18.08 -127.65 -2.31 -45.21 16 8 O -1.00 -48.19 17.17 -127.65 -2.19 -50.38 16 9 C -0.55 -22.29 5.93 71.98 0.43 -21.86 16 10 C 0.01 0.52 1.32 -52.93 -0.07 0.45 16 11 C -0.54 -29.70 8.18 25.60 0.21 -29.49 16 12 H 0.05 2.74 7.83 -2.91 -0.02 2.72 16 13 C 0.04 2.37 5.38 84.65 0.46 2.83 16 14 N -0.89 -48.66 12.98 21.45 0.28 -48.38 16 15 Si 0.93 44.04 29.55 68.60 2.03 46.07 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 19 C -0.20 -8.46 9.96 30.62 0.30 -8.16 16 20 C -0.14 -6.16 9.49 30.62 0.29 -5.87 16 21 C 0.06 1.10 4.35 86.30 0.38 1.47 16 22 N -0.53 -9.07 4.11 -896.37 -3.68 -12.75 16 23 C 0.05 0.77 5.30 86.33 0.46 1.23 16 24 C -0.11 -1.53 6.09 30.65 0.19 -1.34 16 25 C -0.12 -1.47 6.00 30.67 0.18 -1.29 16 26 C -0.11 -1.38 6.09 30.65 0.19 -1.20 16 27 C 0.05 0.78 5.46 86.32 0.47 1.25 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.17 7.75 -2.39 -0.02 1.16 16 30 H 0.05 0.88 6.90 -2.39 -0.02 0.87 16 31 H 0.06 1.78 7.69 -2.39 -0.02 1.76 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.42 9.74 7.37 -96.75 -0.71 9.03 16 34 H 0.12 5.24 8.14 -2.39 -0.02 5.22 16 35 H 0.13 4.36 8.09 -2.39 -0.02 4.34 16 36 H 0.27 13.78 8.32 -92.71 -0.77 13.00 16 37 H 0.10 3.75 8.14 -2.38 -0.02 3.73 16 38 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 39 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 41 H 0.09 1.49 7.99 -2.39 -0.02 1.47 16 42 H 0.03 0.59 8.12 -2.38 -0.02 0.58 16 43 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.08 1.31 6.12 -2.39 -0.01 1.29 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 49 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 51 H 0.08 1.11 8.01 -2.39 -0.02 1.09 16 52 H 0.03 0.42 8.14 -2.38 -0.02 0.40 16 Total: -1.00 -68.16 417.16 -2.52 -70.68 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.16 Total: 30.42 kcal Atomic # 6 Polarization: -66.58 SS G_CDS: 4.57 Total: -62.00 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -4.49 Total: -93.46 kcal Atomic # 8 Polarization: -91.09 SS G_CDS: -4.50 Total: -95.59 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 104.18 SS G_CDS: -0.29 Total: 103.89 kcal Total: -68.16 -2.52 -70.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451083661.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.345 kcal (2) G-P(sol) polarization free energy of solvation -68.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds