Wall clock time and date at job start Wed Apr 1 2020 03:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47606 * 2 1 4 4 C 1.46845 * 110.99788 * 298.87132 * 3 2 1 5 5 C 1.53046 * 109.57140 * 174.18730 * 4 3 2 6 6 C 1.53121 * 109.27368 * 59.08772 * 5 4 3 7 7 H 1.09005 * 109.52106 * 182.50252 * 6 5 4 8 8 N 1.46498 * 109.52248 * 62.37286 * 6 5 4 9 9 C 1.46495 * 120.00260 * 243.38666 * 8 6 5 10 10 S 1.65602 * 119.99867 * 63.39032 * 8 6 5 11 11 O 1.42093 * 104.27763 * 206.06747 * 10 8 6 12 12 O 1.42099 * 104.27984 * 333.92911 * 10 8 6 13 13 C 1.81402 * 104.44901 * 90.00071 * 10 8 6 14 14 C 1.53002 * 109.47213 * 184.61549 * 13 10 8 15 15 C 1.50704 * 115.54789 * 29.64714 * 14 13 10 16 16 H 1.07997 * 119.99405 * 274.41310 * 15 14 13 17 17 C 1.37876 * 120.00163 * 94.41886 * 15 14 13 18 18 N 1.31518 * 119.99485 * 184.47798 * 17 15 14 19 19 Si 1.86792 * 120.00110 * 4.47727 * 17 15 14 20 20 H 1.48505 * 109.47038 * 94.69349 * 19 17 15 21 21 H 1.48499 * 109.47174 * 214.69252 * 19 17 15 22 22 H 1.48495 * 109.47483 * 334.69685 * 19 17 15 23 23 C 1.52989 * 117.50128 * 243.93433 * 14 13 10 24 24 C 1.53000 * 60.00263 * 252.50969 * 23 14 13 25 25 C 1.53115 * 109.21276 * 302.43832 * 6 5 4 26 26 C 1.46840 * 110.99908 * 174.65988 * 3 2 1 27 27 H 1.09003 * 109.46494 * 65.82734 * 26 3 2 28 28 C 1.52998 * 109.46736 * 305.85686 * 26 3 2 29 29 H 1.09005 * 109.46592 * 299.99762 * 1 2 3 30 30 H 1.09000 * 109.46993 * 59.99475 * 1 2 3 31 31 H 1.08996 * 109.46947 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46592 * 240.00237 * 2 1 3 33 33 H 1.09000 * 109.46993 * 120.00525 * 2 1 3 34 34 H 1.08991 * 109.46742 * 294.17291 * 4 3 2 35 35 H 1.09003 * 109.46183 * 54.15849 * 4 3 2 36 36 H 1.08994 * 109.45598 * 299.17770 * 5 4 3 37 37 H 1.09004 * 109.55481 * 179.05964 * 5 4 3 38 38 H 1.09004 * 109.47186 * 94.87160 * 9 8 6 39 39 H 1.08995 * 109.47709 * 214.87382 * 9 8 6 40 40 H 1.09002 * 109.47244 * 334.87697 * 9 8 6 41 41 H 1.09009 * 109.47016 * 304.61454 * 13 10 8 42 42 H 1.08997 * 109.47289 * 64.61318 * 13 10 8 43 43 H 0.97008 * 119.99472 * 179.97438 * 18 17 15 44 44 H 1.09001 * 117.50203 * 0.02562 * 23 14 13 45 45 H 1.09003 * 117.50502 * 145.01774 * 23 14 13 46 46 H 1.08999 * 117.49953 * 252.50707 * 24 23 14 47 47 H 1.09002 * 117.49678 * 107.48856 * 24 23 14 48 48 H 1.08997 * 109.50528 * 177.56174 * 25 6 5 49 49 H 1.09001 * 109.50206 * 297.68090 * 25 6 5 50 50 H 1.09002 * 109.47124 * 305.18065 * 28 26 3 51 51 H 1.08996 * 109.47243 * 65.17770 * 28 26 3 52 52 H 1.08999 * 109.47328 * 185.17814 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.5712 2.1017 -1.2005 5 6 1.9745 3.5746 -1.0990 6 6 3.4962 3.6735 -0.9599 7 1 3.7841 4.7182 -0.8426 8 7 4.1342 3.1212 -2.1575 9 6 4.9869 1.9347 -2.0522 10 16 3.8914 3.8382 -3.6304 11 8 4.0851 2.7880 -4.5676 12 8 2.6316 4.4832 -3.5028 13 6 5.2230 5.0629 -3.7626 14 6 5.0396 5.8796 -5.0434 15 6 3.6160 6.0479 -5.5085 16 1 3.1568 5.2904 -6.1263 17 6 2.9001 7.1689 -5.1455 18 7 1.6318 7.2749 -5.4769 19 14 3.7316 8.5370 -4.1832 20 1 4.2181 9.5786 -5.1234 21 1 2.7579 9.1396 -3.2377 22 1 4.8799 7.9808 -3.4236 23 6 6.1248 5.7653 -6.1156 24 6 6.0034 7.0433 -5.2833 25 6 3.9424 2.8785 0.2703 26 6 3.4821 1.4260 0.1276 27 1 3.9366 0.9865 -0.7604 28 6 3.9085 0.6323 1.3641 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0346 1.6592 -2.0822 35 1 0.4869 2.0273 -1.2840 36 1 1.4995 4.0217 -0.2258 37 1 1.6561 4.1029 -1.9977 38 1 4.3981 1.0435 -2.2696 39 1 5.8066 2.0117 -2.7664 40 1 5.3906 1.8659 -1.0420 41 1 5.1917 5.7284 -2.8997 42 1 6.1852 4.5517 -3.7923 43 1 1.1280 8.0635 -5.2212 44 1 6.9694 5.1079 -5.9089 45 1 5.8094 5.8115 -7.1580 46 1 5.6081 7.9305 -5.7781 47 1 6.7683 7.2271 -4.5288 48 1 5.0291 2.9098 0.3492 49 1 3.4993 3.3144 1.1656 50 1 3.3824 1.0131 2.2395 51 1 3.6635 -0.4203 1.2225 52 1 4.9832 0.7385 1.5113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451234919.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:21 Heat of formation + Delta-G solvation = -8.672697 kcal Electronic energy + Delta-G solvation = -31553.035178 eV Core-core repulsion = 27681.993663 eV Total energy + Delta-G solvation = -3871.041516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.06122 -37.15035 -36.26380 -36.09446 -34.89692 -32.86521 -32.17721 -32.11938 -29.40747 -28.49420 -27.15666 -26.56533 -25.49372 -23.59223 -21.88164 -21.84773 -20.87485 -20.01144 -19.25495 -18.04254 -16.93085 -16.61612 -16.21514 -15.47793 -15.39417 -15.31557 -14.80098 -14.48308 -14.34961 -14.23837 -14.13197 -13.87713 -13.22365 -13.08307 -12.98459 -12.69708 -12.60063 -12.43447 -12.21329 -12.04151 -11.97420 -11.76786 -11.69668 -11.48293 -11.30856 -11.29025 -11.06984 -11.02420 -10.94858 -10.64852 -10.54410 -10.46934 -10.40947 -10.35637 -10.06034 -9.64990 -9.53129 -9.11663 -8.71327 -8.60217 -8.39165 -8.14126 -6.14729 -4.26422 1.09264 3.23787 3.35060 3.36735 3.41894 3.90383 4.37444 4.60259 4.64910 4.71952 4.80286 4.90642 4.94385 5.06107 5.10867 5.17692 5.18070 5.28304 5.33990 5.45096 5.45699 5.51068 5.51585 5.54469 5.63687 5.68422 5.73761 5.74636 5.77535 5.81240 5.92503 5.96998 5.99431 6.00021 6.06406 6.07722 6.13923 6.17398 6.21140 6.31115 6.37472 6.45736 6.57481 6.77768 6.90042 6.98516 7.02710 7.19122 7.25587 7.59325 8.35023 8.85361 9.46868 10.96610 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.004103 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.086070 B = 6822.015365 C = 7264.528188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 N -0.533 5.533 4 C 0.058 3.942 5 C -0.163 4.163 6 C 0.156 3.844 7 H 0.074 0.926 8 N -1.014 6.014 9 C 0.089 3.911 10 S 2.628 3.372 11 O -0.971 6.971 12 O -0.909 6.909 13 C -0.584 4.584 14 C 0.012 3.988 15 C -0.540 4.540 16 H 0.087 0.913 17 C 0.109 3.891 18 N -0.864 5.864 19 Si 0.874 3.126 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.255 1.255 23 C -0.179 4.179 24 C -0.188 4.188 25 C -0.111 4.111 26 C 0.053 3.947 27 H 0.070 0.930 28 C -0.147 4.147 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.267 0.733 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.082 0.918 50 H 0.062 0.938 51 H 0.053 0.947 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 -11.234 14.245 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.081 4.081 3 N -0.259 5.259 4 C -0.069 4.069 5 C -0.202 4.202 6 C 0.051 3.949 7 H 0.092 0.908 8 N -0.851 5.851 9 C -0.057 4.057 10 S 2.724 3.276 11 O -0.962 6.962 12 O -0.899 6.899 13 C -0.714 4.714 14 C 0.010 3.990 15 C -0.577 4.577 16 H 0.104 0.896 17 C -0.099 4.099 18 N -0.498 5.498 19 Si 0.702 3.298 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.179 1.179 23 C -0.216 4.216 24 C -0.226 4.226 25 C -0.150 4.150 26 C -0.055 4.055 27 H 0.087 0.913 28 C -0.204 4.204 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.147 0.853 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.133 0.867 42 H 0.121 0.879 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.111 0.889 46 H 0.107 0.893 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.100 0.900 50 H 0.081 0.919 51 H 0.072 0.928 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.613 -11.140 14.076 18.534 hybrid contribution 1.434 0.775 0.138 1.636 sum 6.047 -10.365 14.215 18.603 Atomic orbital electron populations 1.21839 0.95107 1.01273 1.02668 1.22110 0.95918 0.89629 1.00444 1.62055 1.10309 1.13751 1.39790 1.22055 1.00300 0.94481 0.90073 1.22705 0.94582 0.96530 1.06430 1.20821 0.93128 0.96650 0.84345 0.90755 1.58170 1.61890 1.39608 1.25464 1.21679 0.93702 0.87721 1.02562 1.04772 0.76836 0.74551 0.71437 1.93479 1.87494 1.54634 1.60598 1.93491 1.36227 1.76735 1.83408 1.30270 1.17720 1.16095 1.07359 1.18788 0.93311 0.96861 0.90060 1.20337 0.92253 1.09301 1.35807 0.89550 1.24849 0.94037 0.97506 0.93459 1.69881 1.07498 1.28352 1.44021 0.86993 0.79655 0.82431 0.80746 1.20545 1.21853 1.17870 1.23048 1.00783 0.99895 0.97910 1.22918 1.03037 0.93291 1.03329 1.21842 1.00431 0.94844 0.97865 1.22272 0.88404 0.95963 0.98830 0.91260 1.21917 1.00806 0.99563 0.98162 0.91949 0.92343 0.92631 0.95379 0.90651 0.94916 0.90470 0.90722 0.85275 0.92895 0.92034 0.90370 0.86669 0.87893 0.92264 0.90740 0.88875 0.89289 0.90619 0.90990 0.89965 0.91920 0.92753 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.72 37.16 0.36 -1.14 16 2 C 0.05 0.50 5.32 -3.82 -0.02 0.48 16 3 N -0.53 -6.49 4.53 -226.69 -1.03 -7.52 16 4 C 0.06 0.85 5.09 -3.83 -0.02 0.83 16 5 C -0.16 -2.54 5.44 -26.64 -0.14 -2.69 16 6 C 0.16 2.19 3.12 -67.81 -0.21 1.98 16 7 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 8 N -1.01 -15.59 2.56 -114.48 -0.29 -15.88 16 9 C 0.09 1.11 8.02 59.84 0.48 1.59 16 10 S 2.63 54.03 4.60 -107.50 -0.49 53.54 16 11 O -0.97 -22.36 17.18 -57.54 -0.99 -23.35 16 12 O -0.91 -21.76 12.58 -57.54 -0.72 -22.48 16 13 C -0.58 -11.42 6.38 37.16 0.24 -11.19 16 14 C 0.01 0.28 1.38 -155.66 -0.22 0.07 16 15 C -0.54 -14.95 6.72 -34.44 -0.23 -15.19 16 16 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 17 C 0.11 3.10 5.43 -17.82 -0.10 3.00 16 18 N -0.86 -26.06 13.96 55.43 0.77 -25.29 16 19 Si 0.87 21.16 24.83 -169.99 -4.22 16.94 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.25 -5.67 5.79 56.52 0.33 -5.34 16 23 C -0.18 -3.67 9.88 -26.74 -0.26 -3.93 16 24 C -0.19 -3.94 6.88 -26.73 -0.18 -4.12 16 25 C -0.11 -1.21 4.36 -26.65 -0.12 -1.32 16 26 C 0.05 0.57 1.78 -67.72 -0.12 0.45 16 27 H 0.07 0.79 3.73 -51.93 -0.19 0.60 16 28 C -0.15 -1.26 8.59 37.16 0.32 -0.94 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.64 6.30 -51.93 -0.33 0.31 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.70 6.02 -51.93 -0.31 0.39 16 34 H 0.03 0.53 7.69 -51.93 -0.40 0.13 16 35 H 0.08 1.10 6.04 -51.93 -0.31 0.78 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.13 2.47 4.89 -51.93 -0.25 2.21 16 38 H 0.05 0.68 6.85 -51.93 -0.36 0.32 16 39 H 0.06 0.73 7.97 -51.93 -0.41 0.32 16 40 H 0.08 0.75 4.81 -51.93 -0.25 0.50 16 41 H 0.11 2.08 7.89 -51.92 -0.41 1.67 16 42 H 0.10 1.67 7.88 -51.93 -0.41 1.26 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.07 1.31 8.03 -51.93 -0.42 0.90 16 45 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 46 H 0.09 1.94 6.05 -51.93 -0.31 1.63 16 47 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.07 0.66 6.93 -51.93 -0.36 0.30 16 49 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 50 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.05 0.44 6.53 -51.93 -0.34 0.10 16 52 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -33.02 383.74 -10.35 -43.37 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -8.93 Total: 7.01 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: -0.23 Total: -32.11 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.55 Total: -48.69 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -1.71 Total: -45.84 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.22 Total: 16.94 kcal Atomic # 16 Polarization: 54.03 SS G_CDS: -0.49 Total: 53.54 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.02 -10.35 -43.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451234919.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.695 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds