Wall clock time and date at job start Wed Apr 1 2020 03:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47606 * 2 1 4 4 C 1.46845 * 110.99788 * 298.87132 * 3 2 1 5 5 C 1.53046 * 109.57140 * 174.18730 * 4 3 2 6 6 C 1.53121 * 109.27368 * 59.08772 * 5 4 3 7 7 H 1.09005 * 109.52106 * 182.50252 * 6 5 4 8 8 N 1.46498 * 109.52248 * 62.37286 * 6 5 4 9 9 C 1.46495 * 120.00260 * 243.38666 * 8 6 5 10 10 S 1.65602 * 119.99867 * 63.39032 * 8 6 5 11 11 O 1.42093 * 104.27763 * 206.06747 * 10 8 6 12 12 O 1.42099 * 104.27984 * 333.92911 * 10 8 6 13 13 C 1.81402 * 104.44901 * 90.00071 * 10 8 6 14 14 C 1.53002 * 109.47213 * 184.61549 * 13 10 8 15 15 C 1.50704 * 115.54789 * 29.64714 * 14 13 10 16 16 H 1.07997 * 119.99405 * 274.41310 * 15 14 13 17 17 C 1.37876 * 120.00163 * 94.41886 * 15 14 13 18 18 N 1.31518 * 119.99485 * 184.47798 * 17 15 14 19 19 Si 1.86792 * 120.00110 * 4.47727 * 17 15 14 20 20 H 1.48505 * 109.47038 * 94.69349 * 19 17 15 21 21 H 1.48499 * 109.47174 * 214.69252 * 19 17 15 22 22 H 1.48495 * 109.47483 * 334.69685 * 19 17 15 23 23 C 1.52989 * 117.50128 * 243.93433 * 14 13 10 24 24 C 1.53000 * 60.00263 * 252.50969 * 23 14 13 25 25 C 1.53115 * 109.21276 * 302.43832 * 6 5 4 26 26 C 1.46840 * 110.99908 * 174.65988 * 3 2 1 27 27 H 1.09003 * 109.46494 * 65.82734 * 26 3 2 28 28 C 1.52998 * 109.46736 * 305.85686 * 26 3 2 29 29 H 1.09005 * 109.46592 * 299.99762 * 1 2 3 30 30 H 1.09000 * 109.46993 * 59.99475 * 1 2 3 31 31 H 1.08996 * 109.46947 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46592 * 240.00237 * 2 1 3 33 33 H 1.09000 * 109.46993 * 120.00525 * 2 1 3 34 34 H 1.08991 * 109.46742 * 294.17291 * 4 3 2 35 35 H 1.09003 * 109.46183 * 54.15849 * 4 3 2 36 36 H 1.08994 * 109.45598 * 299.17770 * 5 4 3 37 37 H 1.09004 * 109.55481 * 179.05964 * 5 4 3 38 38 H 1.09004 * 109.47186 * 94.87160 * 9 8 6 39 39 H 1.08995 * 109.47709 * 214.87382 * 9 8 6 40 40 H 1.09002 * 109.47244 * 334.87697 * 9 8 6 41 41 H 1.09009 * 109.47016 * 304.61454 * 13 10 8 42 42 H 1.08997 * 109.47289 * 64.61318 * 13 10 8 43 43 H 0.97008 * 119.99472 * 179.97438 * 18 17 15 44 44 H 1.09001 * 117.50203 * 0.02562 * 23 14 13 45 45 H 1.09003 * 117.50502 * 145.01774 * 23 14 13 46 46 H 1.08999 * 117.49953 * 252.50707 * 24 23 14 47 47 H 1.09002 * 117.49678 * 107.48856 * 24 23 14 48 48 H 1.08997 * 109.50528 * 177.56174 * 25 6 5 49 49 H 1.09001 * 109.50206 * 297.68090 * 25 6 5 50 50 H 1.09002 * 109.47124 * 305.18065 * 28 26 3 51 51 H 1.08996 * 109.47243 * 65.17770 * 28 26 3 52 52 H 1.08999 * 109.47328 * 185.17814 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.5712 2.1017 -1.2005 5 6 1.9745 3.5746 -1.0990 6 6 3.4962 3.6735 -0.9599 7 1 3.7841 4.7182 -0.8426 8 7 4.1342 3.1212 -2.1575 9 6 4.9869 1.9347 -2.0522 10 16 3.8914 3.8382 -3.6304 11 8 4.0851 2.7880 -4.5676 12 8 2.6316 4.4832 -3.5028 13 6 5.2230 5.0629 -3.7626 14 6 5.0396 5.8796 -5.0434 15 6 3.6160 6.0479 -5.5085 16 1 3.1568 5.2904 -6.1263 17 6 2.9001 7.1689 -5.1455 18 7 1.6318 7.2749 -5.4769 19 14 3.7316 8.5370 -4.1832 20 1 4.2181 9.5786 -5.1234 21 1 2.7579 9.1396 -3.2377 22 1 4.8799 7.9808 -3.4236 23 6 6.1248 5.7653 -6.1156 24 6 6.0034 7.0433 -5.2833 25 6 3.9424 2.8785 0.2703 26 6 3.4821 1.4260 0.1276 27 1 3.9366 0.9865 -0.7604 28 6 3.9085 0.6323 1.3641 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0346 1.6592 -2.0822 35 1 0.4869 2.0273 -1.2840 36 1 1.4995 4.0217 -0.2258 37 1 1.6561 4.1029 -1.9977 38 1 4.3981 1.0435 -2.2696 39 1 5.8066 2.0117 -2.7664 40 1 5.3906 1.8659 -1.0420 41 1 5.1917 5.7284 -2.8997 42 1 6.1852 4.5517 -3.7923 43 1 1.1280 8.0635 -5.2212 44 1 6.9694 5.1079 -5.9089 45 1 5.8094 5.8115 -7.1580 46 1 5.6081 7.9305 -5.7781 47 1 6.7683 7.2271 -4.5288 48 1 5.0291 2.9098 0.3492 49 1 3.4993 3.3144 1.1656 50 1 3.3824 1.0131 2.2395 51 1 3.6635 -0.4203 1.2225 52 1 4.9832 0.7385 1.5113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451234919.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:20 Heat of formation + Delta-G solvation = -33.145758 kcal Electronic energy + Delta-G solvation = -31554.096410 eV Core-core repulsion = 27681.993663 eV Total energy + Delta-G solvation = -3872.102747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.06435 -38.86835 -37.92675 -37.18276 -36.56889 -34.26074 -33.75637 -33.26096 -30.35089 -30.08007 -28.04145 -27.70143 -27.43283 -24.63278 -23.49791 -22.79278 -21.96083 -21.27291 -20.80411 -19.58361 -18.56730 -18.14161 -17.34858 -17.15109 -16.75758 -16.47739 -16.30982 -15.80256 -15.53498 -15.41977 -15.21978 -15.15324 -14.83718 -14.55651 -14.26739 -14.13581 -14.06465 -13.65057 -13.17755 -13.16215 -13.07215 -12.86694 -12.77675 -12.74451 -12.69366 -12.54322 -12.47631 -12.41842 -12.31949 -12.23523 -12.07808 -11.85121 -11.71516 -11.50695 -11.49265 -11.29214 -10.96523 -10.79758 -10.54288 -10.29210 -9.78512 -9.12610 -8.29593 -6.45460 -0.46566 1.33878 1.36962 1.49781 2.04573 2.36470 2.96146 2.99432 3.08369 3.20619 3.46017 3.61680 3.81815 3.87677 3.98564 4.11603 4.15074 4.19080 4.28968 4.33573 4.35725 4.44607 4.46912 4.52873 4.55110 4.58390 4.61085 4.63448 4.77997 4.80034 4.80571 4.84942 4.86312 4.92550 4.95138 4.97631 5.05316 5.10573 5.12710 5.16249 5.25323 5.31402 5.35767 5.42556 5.47800 5.62777 5.63279 5.83097 6.16845 6.18321 6.30871 6.65070 7.31184 8.86909 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.004103 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.086070 B = 6822.015365 C = 7264.528188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 N -0.532 5.532 4 C 0.065 3.935 5 C -0.167 4.167 6 C 0.150 3.850 7 H 0.082 0.918 8 N -1.002 6.002 9 C 0.079 3.921 10 S 2.620 3.380 11 O -1.011 7.011 12 O -0.958 6.958 13 C -0.573 4.573 14 C -0.028 4.028 15 C -0.537 4.537 16 H 0.026 0.974 17 C 0.050 3.950 18 N -0.925 5.925 19 Si 0.929 3.071 20 H -0.269 1.269 21 H -0.298 1.298 22 H -0.211 1.211 23 C -0.172 4.172 24 C -0.175 4.175 25 C -0.103 4.103 26 C 0.044 3.956 27 H 0.065 0.935 28 C -0.139 4.139 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.019 0.981 33 H 0.097 0.903 34 H 0.005 0.995 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.117 0.883 41 H 0.138 0.862 42 H 0.147 0.853 43 H 0.267 0.733 44 H 0.113 0.887 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.116 0.884 48 H 0.102 0.898 49 H 0.093 0.907 50 H 0.062 0.938 51 H 0.058 0.942 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.997 -11.448 17.875 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 N -0.258 5.258 4 C -0.063 4.063 5 C -0.207 4.207 6 C 0.044 3.956 7 H 0.100 0.900 8 N -0.841 5.841 9 C -0.065 4.065 10 S 2.720 3.280 11 O -1.002 7.002 12 O -0.948 6.948 13 C -0.705 4.705 14 C -0.030 4.030 15 C -0.575 4.575 16 H 0.045 0.955 17 C -0.152 4.152 18 N -0.561 5.561 19 Si 0.753 3.247 20 H -0.194 1.194 21 H -0.226 1.226 22 H -0.133 1.133 23 C -0.209 4.209 24 C -0.213 4.213 25 C -0.142 4.142 26 C -0.064 4.064 27 H 0.082 0.918 28 C -0.197 4.197 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.037 0.963 33 H 0.116 0.884 34 H 0.024 0.976 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.135 0.865 41 H 0.156 0.844 42 H 0.165 0.835 43 H 0.076 0.924 44 H 0.132 0.868 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.134 0.866 48 H 0.120 0.880 49 H 0.111 0.889 50 H 0.081 0.919 51 H 0.077 0.923 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.946 -11.393 17.691 22.864 hybrid contribution 0.025 0.704 -1.065 1.277 sum 8.971 -10.689 16.625 21.705 Atomic orbital electron populations 1.21825 0.94909 1.02155 1.01794 1.22209 0.96189 0.88856 1.00981 1.62101 1.11682 1.14383 1.37597 1.21873 0.99750 0.94323 0.90354 1.22612 0.96685 0.96606 1.04748 1.21036 0.91591 0.97903 0.85021 0.89964 1.57682 1.62399 1.40085 1.23981 1.21997 0.93339 0.85966 1.05200 1.04572 0.76789 0.74506 0.72181 1.93414 1.87974 1.56024 1.62777 1.93470 1.39258 1.77671 1.84384 1.30077 1.18808 1.15548 1.06108 1.18758 0.91132 1.00332 0.92762 1.20385 0.95138 1.07526 1.34412 0.95538 1.25805 0.94363 1.00377 0.94657 1.70057 1.09762 1.29479 1.46797 0.86109 0.79803 0.79121 0.79708 1.19420 1.22576 1.13326 1.23156 1.00494 1.00533 0.96673 1.23037 1.02248 0.92256 1.03742 1.21875 1.02269 0.94009 0.96027 1.22455 0.87252 0.96607 1.00055 0.91758 1.21864 1.02086 0.99231 0.96496 0.91784 0.94196 0.90909 0.96303 0.88446 0.97631 0.91263 0.89709 0.89458 0.93862 0.91114 0.86456 0.84409 0.83532 0.92414 0.86838 0.90349 0.90532 0.86574 0.87982 0.88892 0.91908 0.92320 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.72 71.98 0.70 -2.22 16 2 C 0.05 0.91 5.32 86.30 0.46 1.37 16 3 N -0.53 -12.37 4.53 -871.10 -3.95 -16.32 16 4 C 0.07 1.99 5.09 86.33 0.44 2.43 16 5 C -0.17 -5.38 5.44 30.65 0.17 -5.21 16 6 C 0.15 3.97 3.12 45.07 0.14 4.11 16 7 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 8 N -1.00 -29.58 2.56 -516.11 -1.32 -30.90 16 9 C 0.08 1.78 8.02 127.77 1.02 2.80 16 10 S 2.62 109.56 4.60 -56.49 -0.26 109.30 16 11 O -1.01 -48.38 17.18 -127.65 -2.19 -50.57 16 12 O -0.96 -48.99 12.58 -127.65 -1.61 -50.59 16 13 C -0.57 -20.68 6.38 71.98 0.46 -20.22 16 14 C -0.03 -1.23 1.38 -52.93 -0.07 -1.30 16 15 C -0.54 -30.99 6.72 25.60 0.17 -30.82 16 16 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 17 C 0.05 2.93 5.43 84.65 0.46 3.39 16 18 N -0.92 -59.42 13.96 21.45 0.30 -59.12 16 19 Si 0.93 43.02 24.83 68.60 1.70 44.72 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 22 H -0.21 -8.23 5.79 99.48 0.58 -7.66 16 23 C -0.17 -6.55 9.88 30.59 0.30 -6.25 16 24 C -0.18 -6.62 6.88 30.59 0.21 -6.41 16 25 C -0.10 -1.85 4.36 30.65 0.13 -1.71 16 26 C 0.04 0.82 1.78 44.94 0.08 0.90 16 27 H 0.06 1.30 3.73 -2.39 -0.01 1.30 16 28 C -0.14 -1.79 8.59 71.98 0.62 -1.17 16 29 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.04 0.91 6.30 -2.39 -0.02 0.90 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.02 0.41 8.14 -2.38 -0.02 0.40 16 33 H 0.10 1.55 6.02 -2.39 -0.01 1.54 16 34 H 0.01 0.19 7.69 -2.39 -0.02 0.17 16 35 H 0.07 2.15 6.04 -2.39 -0.01 2.13 16 36 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.09 3.64 4.89 -2.39 -0.01 3.62 16 38 H 0.04 1.07 6.85 -2.38 -0.02 1.05 16 39 H 0.07 1.47 7.97 -2.39 -0.02 1.45 16 40 H 0.12 1.70 4.81 -2.39 -0.01 1.69 16 41 H 0.14 4.33 7.89 -2.39 -0.02 4.31 16 42 H 0.15 3.98 7.88 -2.39 -0.02 3.96 16 43 H 0.27 16.01 8.31 -92.70 -0.77 15.24 16 44 H 0.11 3.44 8.03 -2.39 -0.02 3.42 16 45 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 46 H 0.08 3.10 6.05 -2.39 -0.01 3.09 16 47 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 48 H 0.10 1.27 6.93 -2.39 -0.02 1.25 16 49 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.06 0.72 6.53 -2.39 -0.02 0.70 16 52 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -80.22 383.74 -1.26 -81.48 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.77 Total: 32.31 kcal Atomic # 6 Polarization: -65.60 SS G_CDS: 5.29 Total: -60.31 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -4.97 Total: -106.34 kcal Atomic # 8 Polarization: -97.36 SS G_CDS: -3.80 Total: -101.16 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.70 Total: 44.72 kcal Atomic # 16 Polarization: 109.56 SS G_CDS: -0.26 Total: 109.30 kcal Total: -80.22 -1.26 -81.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451234919.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.339 kcal (2) G-P(sol) polarization free energy of solvation -80.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds