Wall clock time and date at job start Wed Apr 1 2020 03:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00324 * 2 1 4 4 H 1.09006 * 109.86887 * 359.30362 * 3 2 1 5 5 O 1.43742 * 109.88220 * 238.29274 * 3 2 1 6 6 C 1.44576 * 106.87170 * 214.16965 * 5 3 2 7 7 C 1.54995 * 103.58345 * 39.88196 * 6 5 3 8 8 C 1.54103 * 109.87961 * 120.30415 * 3 2 1 9 9 H 1.08998 * 110.48911 * 2.65251 * 8 3 2 10 10 N 1.46894 * 110.49102 * 240.13281 * 8 3 2 11 11 C 1.46904 * 111.00129 * 154.99977 * 10 8 3 12 12 H 1.09001 * 109.46962 * 35.00258 * 11 10 8 13 13 C 1.52989 * 109.46955 * 274.99987 * 11 10 8 14 14 C 1.50704 * 109.46923 * 155.00092 * 11 10 8 15 15 O 1.21288 * 120.00028 * 12.55396 * 14 11 10 16 16 N 1.34776 * 119.99884 * 192.55582 * 14 11 10 17 17 C 1.46500 * 119.99793 * 5.53238 * 16 14 11 18 18 C 1.50697 * 109.47467 * 86.01449 * 17 16 14 19 19 H 1.08002 * 119.99918 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00457 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99988 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00084 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47156 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47062 * 120.00089 * 22 20 18 25 25 H 1.48506 * 109.46891 * 240.00094 * 22 20 18 26 26 C 1.39920 * 120.00210 * 185.53295 * 16 14 11 27 27 C 1.38871 * 120.07180 * 7.48884 * 26 16 14 28 28 C 1.38109 * 119.93405 * 179.71761 * 27 26 16 29 29 C 1.38286 * 120.06603 * 0.57894 * 28 27 26 30 30 C 1.38284 * 120.14216 * 359.67332 * 29 28 27 31 31 C 1.38113 * 120.07032 * 0.04453 * 30 29 28 32 32 H 1.08001 * 119.99700 * 359.97438 * 1 2 3 33 33 H 1.07997 * 120.00081 * 179.97438 * 1 2 3 34 34 H 1.08005 * 119.99917 * 180.27488 * 2 1 3 35 35 H 1.08995 * 110.50585 * 281.37788 * 6 5 3 36 36 H 1.08999 * 110.77175 * 158.50675 * 6 5 3 37 37 H 1.08998 * 110.90488 * 204.85346 * 7 6 5 38 38 H 1.09003 * 110.94062 * 81.26652 * 7 6 5 39 39 H 1.00897 * 110.99929 * 31.04455 * 10 8 3 40 40 H 1.09007 * 109.47457 * 295.09956 * 13 11 10 41 41 H 1.09004 * 109.47377 * 55.10538 * 13 11 10 42 42 H 1.09008 * 109.47302 * 175.10372 * 13 11 10 43 43 H 1.08998 * 109.47299 * 206.01265 * 17 16 14 44 44 H 1.08995 * 109.47301 * 326.00849 * 17 16 14 45 45 H 0.97001 * 120.00067 * 179.97438 * 21 20 18 46 46 H 1.08012 * 120.03054 * 359.97438 * 27 26 16 47 47 H 1.08001 * 119.96743 * 180.25360 * 28 27 26 48 48 H 1.08005 * 119.92684 * 179.70066 * 29 28 27 49 49 H 1.07995 * 119.96192 * 180.02562 * 30 29 28 50 50 H 1.07999 * 120.03561 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3611 2.1384 -0.0125 5 8 2.9232 1.3731 -1.1500 6 6 4.1078 2.0969 -0.7461 7 6 4.3885 1.5671 0.6832 8 6 2.9588 1.3932 1.2512 9 1 2.8878 0.4764 1.8365 10 7 2.5859 2.5546 2.0696 11 6 2.9635 2.3516 3.4747 12 1 3.8951 1.7877 3.5227 13 6 1.8588 1.5738 4.1924 14 6 3.1512 3.6894 4.1426 15 8 2.7719 4.7010 3.5914 16 7 3.7407 3.7618 5.3525 17 6 4.3074 2.5573 5.9643 18 6 5.7185 2.3607 5.4732 19 1 6.1499 3.0626 4.7748 20 6 6.4589 1.2850 5.9154 21 7 5.9338 0.4306 6.7662 22 14 8.2082 1.0418 5.3071 23 1 8.5604 2.1332 4.3636 24 1 9.1415 1.0646 6.4619 25 1 8.3131 -0.2661 4.6116 26 6 3.8113 4.9872 6.0242 27 6 3.1418 6.0955 5.5222 28 6 3.2087 7.3022 6.1907 29 6 3.9511 7.4104 7.3523 30 6 4.6231 6.3100 7.8520 31 6 4.5555 5.0991 7.1914 32 1 -0.5400 0.9353 0.0004 33 1 -0.5400 -0.9353 -0.0004 34 1 1.8500 -0.9353 -0.0045 35 1 3.9120 3.1690 -0.7266 36 1 4.9430 1.8725 -1.4095 37 1 4.9519 2.2968 1.2648 38 1 4.9123 0.6118 0.6487 39 1 1.6006 2.7548 1.9853 40 1 0.9502 2.1753 4.2204 41 1 1.6629 0.6442 3.6579 42 1 2.1763 1.3475 5.2104 43 1 4.3124 2.6685 7.0486 44 1 3.7036 1.6922 5.6906 45 1 6.4546 -0.3264 7.0771 46 1 2.5661 6.0128 4.6121 47 1 2.6850 8.1634 5.8030 48 1 4.0058 8.3564 7.8707 49 1 5.2017 6.3978 8.7597 50 1 5.0809 4.2401 7.5819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451610313.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:08 Heat of formation + Delta-G solvation = -7.967241 kcal Electronic energy + Delta-G solvation = -31216.836703 eV Core-core repulsion = 27210.381827 eV Total energy + Delta-G solvation = -4006.454876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39701 -39.65819 -37.91220 -35.70034 -35.27433 -33.97347 -32.75489 -31.71916 -30.31198 -29.68668 -28.77767 -27.31226 -27.04815 -24.22912 -23.34015 -22.90986 -22.10914 -21.24042 -20.45717 -20.21248 -18.82471 -17.15078 -16.88856 -16.53635 -16.46391 -16.11556 -15.65296 -15.17113 -14.80504 -14.63125 -14.51126 -14.32649 -13.94199 -13.60674 -13.43303 -13.21377 -13.10832 -13.01189 -12.74868 -12.40059 -12.35885 -12.03420 -11.93493 -11.78249 -11.52898 -11.34437 -11.20716 -11.14404 -11.04514 -10.98912 -10.93886 -10.70436 -10.56567 -10.31234 -10.09364 -9.81327 -9.57709 -9.19729 -8.82517 -8.67073 -8.34977 -8.20262 -7.18400 -6.32395 -4.40974 1.87403 1.99566 2.00455 3.13421 3.19759 3.23611 3.30311 3.48664 3.98658 4.20899 4.33629 4.49289 4.55256 4.70127 4.88748 4.96211 5.03018 5.09194 5.18220 5.28716 5.37339 5.45403 5.46451 5.49933 5.55620 5.60775 5.70253 5.77680 5.83052 5.89065 5.99839 6.06309 6.08192 6.14657 6.17020 6.19771 6.24603 6.38418 6.51848 6.53436 6.74457 6.76281 6.89853 6.99153 7.05500 7.12227 7.13343 7.29551 7.45888 7.61294 7.81304 7.86479 8.10715 8.64608 8.81467 9.27526 10.73481 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008659 B = 0.004136 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.773327 B = 6768.527163 C = 8675.945888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.152 4.152 3 C 0.105 3.895 4 H 0.077 0.923 5 O -0.372 6.372 6 C 0.051 3.949 7 C -0.146 4.146 8 C 0.063 3.937 9 H 0.068 0.932 10 N -0.657 5.657 11 C 0.070 3.930 12 H 0.124 0.876 13 C -0.180 4.180 14 C 0.529 3.471 15 O -0.528 6.528 16 N -0.537 5.537 17 C 0.221 3.779 18 C -0.540 4.540 19 H 0.063 0.937 20 C 0.069 3.931 21 N -0.888 5.888 22 Si 0.895 3.105 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.173 3.827 27 C -0.176 4.176 28 C -0.108 4.108 29 C -0.163 4.163 30 C -0.104 4.104 31 C -0.148 4.148 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.344 0.656 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.046 0.954 44 H 0.052 0.948 45 H 0.267 0.733 46 H 0.172 0.828 47 H 0.114 0.886 48 H 0.110 0.890 49 H 0.116 0.884 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.739 1.265 -6.571 10.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.171 4.171 3 C 0.047 3.953 4 H 0.094 0.906 5 O -0.291 6.291 6 C -0.026 4.026 7 C -0.185 4.185 8 C -0.047 4.047 9 H 0.086 0.914 10 N -0.289 5.289 11 C -0.042 4.042 12 H 0.142 0.858 13 C -0.239 4.239 14 C 0.319 3.681 15 O -0.406 6.406 16 N -0.257 5.257 17 C 0.102 3.898 18 C -0.578 4.578 19 H 0.082 0.918 20 C -0.134 4.134 21 N -0.526 5.526 22 Si 0.722 3.278 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.207 1.207 26 C 0.077 3.923 27 C -0.195 4.195 28 C -0.127 4.127 29 C -0.183 4.183 30 C -0.123 4.123 31 C -0.169 4.169 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.164 0.836 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.188 0.812 47 H 0.132 0.868 48 H 0.128 0.872 49 H 0.134 0.866 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.377 1.778 -7.174 10.443 hybrid contribution 0.636 -0.891 0.517 1.210 sum -6.741 0.887 -6.657 9.516 Atomic orbital electron populations 1.23884 0.95668 1.02202 0.99635 1.22934 0.95839 0.97934 1.00351 1.21980 0.92289 0.95459 0.85589 0.90569 1.88919 1.30784 1.76797 1.32582 1.23578 0.87400 0.96464 0.95123 1.23197 0.96348 1.02503 0.96410 1.22874 0.95057 0.93004 0.93753 0.91426 1.60221 1.24018 1.37507 1.07154 1.21502 1.01406 0.93869 0.87453 0.85845 1.22500 0.98264 1.00146 1.03003 1.20452 0.76697 0.90813 0.80150 1.90308 1.50784 1.36033 1.63473 1.45994 1.52916 1.09283 1.17481 1.19865 0.94373 0.80440 0.95134 1.21437 0.97779 1.10501 1.28076 0.91838 1.24899 0.98582 0.95373 0.94596 1.69918 1.37481 1.14061 1.31162 0.86466 0.84072 0.78270 0.78960 1.19497 1.20670 1.20710 1.18073 0.95745 0.85911 0.92588 1.22487 1.02036 0.91534 1.03492 1.21003 0.99124 0.97286 0.95275 1.20963 1.01100 0.98296 0.97913 1.20855 0.99390 0.92562 0.99495 1.21112 1.00735 0.98996 0.96042 0.88339 0.87924 0.86718 0.91549 0.89263 0.88767 0.90471 0.83557 0.92415 0.91776 0.89901 0.93589 0.93035 0.92373 0.81172 0.86843 0.87202 0.86567 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 14.32 29.01 0.42 -1.23 16 2 C -0.15 -1.66 8.94 -36.03 -0.32 -1.98 16 3 C 0.11 1.30 3.48 -27.31 -0.09 1.20 16 4 H 0.08 0.93 7.18 -51.93 -0.37 0.55 16 5 O -0.37 -5.13 11.19 -35.23 -0.39 -5.53 16 6 C 0.05 0.64 7.72 38.21 0.29 0.93 16 7 C -0.15 -1.99 6.88 -24.72 -0.17 -2.16 16 8 C 0.06 0.84 2.73 -66.18 -0.18 0.66 16 9 H 0.07 0.90 6.74 -51.93 -0.35 0.55 16 10 N -0.66 -9.68 5.57 -99.36 -0.55 -10.23 16 11 C 0.07 1.18 2.02 -68.87 -0.14 1.04 16 12 H 0.12 2.32 6.74 -51.93 -0.35 1.97 16 13 C -0.18 -2.62 8.88 37.15 0.33 -2.29 16 14 C 0.53 10.46 6.86 -10.98 -0.08 10.38 16 15 O -0.53 -11.05 12.98 5.55 0.07 -10.98 16 16 N -0.54 -11.19 2.69 -114.74 -0.31 -11.50 16 17 C 0.22 4.92 4.16 -5.20 -0.02 4.90 16 18 C -0.54 -13.28 8.84 -34.44 -0.30 -13.59 16 19 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 20 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -22.99 13.29 55.43 0.74 -22.25 16 22 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.17 3.55 6.49 -83.70 -0.54 3.01 16 27 C -0.18 -3.39 8.98 -39.39 -0.35 -3.74 16 28 C -0.11 -1.79 10.04 -39.61 -0.40 -2.19 16 29 C -0.16 -2.56 10.04 -39.55 -0.40 -2.96 16 30 C -0.10 -1.74 10.04 -39.61 -0.40 -2.14 16 31 C -0.15 -2.90 9.15 -39.39 -0.36 -3.26 16 32 H 0.10 0.85 7.85 -52.49 -0.41 0.44 16 33 H 0.10 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.45 8.06 -51.93 -0.42 1.03 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.34 4.69 7.80 -39.29 -0.31 4.38 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.82 7.45 -51.93 -0.39 0.43 16 42 H 0.08 1.32 5.83 -51.92 -0.30 1.02 16 43 H 0.05 1.09 6.33 -51.93 -0.33 0.76 16 44 H 0.05 1.14 4.48 -51.93 -0.23 0.90 16 45 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 46 H 0.17 3.44 4.71 -55.26 -0.26 3.18 16 47 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 48 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 49 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 50 H 0.14 2.82 6.29 -52.49 -0.33 2.48 16 LS Contribution 400.05 15.07 6.03 6.03 Total: -1.00 -27.43 400.05 -9.66 -37.08 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -7.40 Total: 14.36 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -2.81 Total: -11.78 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.13 Total: -43.98 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.32 Total: -16.50 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -27.43 -9.66 -37.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451610313.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.115 kcal (2) G-P(sol) polarization free energy of solvation -27.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds