Wall clock time and date at job start Wed Apr 1 2020 03:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00324 * 2 1 4 4 H 1.09006 * 109.86887 * 359.30362 * 3 2 1 5 5 O 1.43742 * 109.88220 * 238.29274 * 3 2 1 6 6 C 1.44576 * 106.87170 * 214.16965 * 5 3 2 7 7 C 1.54995 * 103.58345 * 39.88196 * 6 5 3 8 8 C 1.54103 * 109.87961 * 120.30415 * 3 2 1 9 9 H 1.08998 * 110.48911 * 2.65251 * 8 3 2 10 10 N 1.46894 * 110.49102 * 240.13281 * 8 3 2 11 11 C 1.46904 * 111.00129 * 154.99977 * 10 8 3 12 12 H 1.09001 * 109.46962 * 35.00258 * 11 10 8 13 13 C 1.52989 * 109.46955 * 274.99987 * 11 10 8 14 14 C 1.50704 * 109.46923 * 155.00092 * 11 10 8 15 15 O 1.21288 * 120.00028 * 12.55396 * 14 11 10 16 16 N 1.34776 * 119.99884 * 192.55582 * 14 11 10 17 17 C 1.46500 * 119.99793 * 5.53238 * 16 14 11 18 18 C 1.50697 * 109.47467 * 86.01449 * 17 16 14 19 19 H 1.08002 * 119.99918 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00457 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99988 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00084 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47156 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47062 * 120.00089 * 22 20 18 25 25 H 1.48506 * 109.46891 * 240.00094 * 22 20 18 26 26 C 1.39920 * 120.00210 * 185.53295 * 16 14 11 27 27 C 1.38871 * 120.07180 * 7.48884 * 26 16 14 28 28 C 1.38109 * 119.93405 * 179.71761 * 27 26 16 29 29 C 1.38286 * 120.06603 * 0.57894 * 28 27 26 30 30 C 1.38284 * 120.14216 * 359.67332 * 29 28 27 31 31 C 1.38113 * 120.07032 * 0.04453 * 30 29 28 32 32 H 1.08001 * 119.99700 * 359.97438 * 1 2 3 33 33 H 1.07997 * 120.00081 * 179.97438 * 1 2 3 34 34 H 1.08005 * 119.99917 * 180.27488 * 2 1 3 35 35 H 1.08995 * 110.50585 * 281.37788 * 6 5 3 36 36 H 1.08999 * 110.77175 * 158.50675 * 6 5 3 37 37 H 1.08998 * 110.90488 * 204.85346 * 7 6 5 38 38 H 1.09003 * 110.94062 * 81.26652 * 7 6 5 39 39 H 1.00897 * 110.99929 * 31.04455 * 10 8 3 40 40 H 1.09007 * 109.47457 * 295.09956 * 13 11 10 41 41 H 1.09004 * 109.47377 * 55.10538 * 13 11 10 42 42 H 1.09008 * 109.47302 * 175.10372 * 13 11 10 43 43 H 1.08998 * 109.47299 * 206.01265 * 17 16 14 44 44 H 1.08995 * 109.47301 * 326.00849 * 17 16 14 45 45 H 0.97001 * 120.00067 * 179.97438 * 21 20 18 46 46 H 1.08012 * 120.03054 * 359.97438 * 27 26 16 47 47 H 1.08001 * 119.96743 * 180.25360 * 28 27 26 48 48 H 1.08005 * 119.92684 * 179.70066 * 29 28 27 49 49 H 1.07995 * 119.96192 * 180.02562 * 30 29 28 50 50 H 1.07999 * 120.03561 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3611 2.1384 -0.0125 5 8 2.9232 1.3731 -1.1500 6 6 4.1078 2.0969 -0.7461 7 6 4.3885 1.5671 0.6832 8 6 2.9588 1.3932 1.2512 9 1 2.8878 0.4764 1.8365 10 7 2.5859 2.5546 2.0696 11 6 2.9635 2.3516 3.4747 12 1 3.8951 1.7877 3.5227 13 6 1.8588 1.5738 4.1924 14 6 3.1512 3.6894 4.1426 15 8 2.7719 4.7010 3.5914 16 7 3.7407 3.7618 5.3525 17 6 4.3074 2.5573 5.9643 18 6 5.7185 2.3607 5.4732 19 1 6.1499 3.0626 4.7748 20 6 6.4589 1.2850 5.9154 21 7 5.9338 0.4306 6.7662 22 14 8.2082 1.0418 5.3071 23 1 8.5604 2.1332 4.3636 24 1 9.1415 1.0646 6.4619 25 1 8.3131 -0.2661 4.6116 26 6 3.8113 4.9872 6.0242 27 6 3.1418 6.0955 5.5222 28 6 3.2087 7.3022 6.1907 29 6 3.9511 7.4104 7.3523 30 6 4.6231 6.3100 7.8520 31 6 4.5555 5.0991 7.1914 32 1 -0.5400 0.9353 0.0004 33 1 -0.5400 -0.9353 -0.0004 34 1 1.8500 -0.9353 -0.0045 35 1 3.9120 3.1690 -0.7266 36 1 4.9430 1.8725 -1.4095 37 1 4.9519 2.2968 1.2648 38 1 4.9123 0.6118 0.6487 39 1 1.6006 2.7548 1.9853 40 1 0.9502 2.1753 4.2204 41 1 1.6629 0.6442 3.6579 42 1 2.1763 1.3475 5.2104 43 1 4.3124 2.6685 7.0486 44 1 3.7036 1.6922 5.6906 45 1 6.4546 -0.3264 7.0771 46 1 2.5661 6.0128 4.6121 47 1 2.6850 8.1634 5.8030 48 1 4.0058 8.3564 7.8707 49 1 5.2017 6.3978 8.7597 50 1 5.0809 4.2401 7.5819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451610313.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:07 Heat of formation + Delta-G solvation = -22.836750 kcal Electronic energy + Delta-G solvation = -31217.481493 eV Core-core repulsion = 27210.381827 eV Total energy + Delta-G solvation = -4007.099666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.87168 -40.76620 -39.30628 -36.99453 -36.88293 -34.81788 -34.63737 -32.90340 -31.72570 -31.01785 -30.02165 -29.07522 -28.10109 -25.70655 -25.02576 -23.92433 -23.51289 -22.59951 -21.63237 -21.12400 -20.24541 -18.79842 -18.48431 -18.08872 -17.45951 -17.42183 -16.92688 -16.51849 -16.23300 -16.16997 -15.83934 -15.45603 -15.28927 -14.90371 -14.75034 -14.49476 -14.44410 -14.24592 -14.04439 -13.99356 -13.71866 -13.33227 -13.26498 -13.05626 -12.98253 -12.82976 -12.72513 -12.45654 -12.33411 -12.23269 -12.18339 -12.02807 -11.97751 -11.93982 -11.77145 -10.86807 -10.78323 -10.66737 -10.44364 -10.22921 -9.75382 -9.44859 -8.74259 -8.24271 -6.40526 0.44928 0.59315 1.21017 1.35274 1.40040 1.49233 1.71335 2.02359 2.36421 2.91651 3.03613 3.06744 3.17742 3.46160 3.58624 3.73496 3.95384 4.01192 4.08252 4.12658 4.18311 4.22401 4.26616 4.37247 4.42454 4.51265 4.61392 4.61510 4.64704 4.66723 4.71747 4.80078 4.82991 4.91553 4.97876 4.99943 5.01515 5.03985 5.23442 5.28205 5.45915 5.61525 5.62006 5.64904 5.68837 5.72989 5.76962 5.83839 5.94832 5.96199 6.32284 6.34692 6.46773 6.73238 7.20880 7.32000 8.78823 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008659 B = 0.004136 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.773327 B = 6768.527163 C = 8675.945888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.175 4.175 3 C 0.109 3.891 4 H 0.078 0.922 5 O -0.384 6.384 6 C 0.054 3.946 7 C -0.149 4.149 8 C 0.066 3.934 9 H 0.069 0.931 10 N -0.660 5.660 11 C 0.081 3.919 12 H 0.100 0.900 13 C -0.171 4.171 14 C 0.521 3.479 15 O -0.543 6.543 16 N -0.543 5.543 17 C 0.237 3.763 18 C -0.543 4.543 19 H 0.043 0.957 20 C 0.034 3.966 21 N -0.912 5.912 22 Si 0.948 3.052 23 H -0.277 1.277 24 H -0.277 1.277 25 H -0.272 1.272 26 C 0.141 3.859 27 C -0.192 4.192 28 C -0.104 4.104 29 C -0.152 4.152 30 C -0.102 4.102 31 C -0.170 4.170 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.352 0.648 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.028 0.972 44 H 0.054 0.946 45 H 0.270 0.730 46 H 0.160 0.840 47 H 0.145 0.855 48 H 0.151 0.849 49 H 0.144 0.856 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.393 1.967 -6.801 10.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.194 4.194 3 C 0.051 3.949 4 H 0.096 0.904 5 O -0.303 6.303 6 C -0.022 4.022 7 C -0.188 4.188 8 C -0.044 4.044 9 H 0.087 0.913 10 N -0.293 5.293 11 C -0.032 4.032 12 H 0.118 0.882 13 C -0.229 4.229 14 C 0.312 3.688 15 O -0.422 6.422 16 N -0.263 5.263 17 C 0.118 3.882 18 C -0.581 4.581 19 H 0.061 0.939 20 C -0.168 4.168 21 N -0.550 5.550 22 Si 0.774 3.226 23 H -0.202 1.202 24 H -0.203 1.203 25 H -0.198 1.198 26 C 0.046 3.954 27 C -0.212 4.212 28 C -0.123 4.123 29 C -0.171 4.171 30 C -0.120 4.120 31 C -0.190 4.190 32 H 0.124 0.876 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.173 0.827 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.176 0.824 47 H 0.163 0.837 48 H 0.169 0.831 49 H 0.162 0.838 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.041 2.487 -7.403 11.209 hybrid contribution 0.798 -0.988 0.618 1.412 sum -7.243 1.500 -6.785 10.037 Atomic orbital electron populations 1.24127 0.95124 1.03469 0.96841 1.22893 0.96436 0.97154 1.02891 1.21979 0.91884 0.96581 0.84410 0.90395 1.88906 1.31187 1.76900 1.33344 1.23587 0.87789 0.96023 0.94769 1.23190 0.96453 1.02205 0.96919 1.22885 0.95185 0.92302 0.94050 0.91306 1.60152 1.24602 1.38533 1.06060 1.21298 1.01182 0.92016 0.88679 0.88197 1.22414 0.97726 1.00932 1.01855 1.21008 0.76154 0.91840 0.79813 1.90294 1.51468 1.36801 1.63683 1.45970 1.53223 1.09131 1.17979 1.19525 0.93476 0.81291 0.93944 1.21467 0.98950 1.10101 1.27613 0.93863 1.25467 1.01495 0.95131 0.94696 1.69979 1.38654 1.14479 1.31919 0.85651 0.80427 0.78159 0.78392 1.20151 1.20302 1.19752 1.18408 0.97266 0.86259 0.93499 1.22478 1.02544 0.92412 1.03736 1.21388 0.98691 0.97028 0.95178 1.21401 0.99098 0.99383 0.97181 1.21216 0.99131 0.91666 0.99981 1.21108 1.01572 0.99772 0.96597 0.87615 0.86071 0.86559 0.92117 0.87418 0.91099 0.89813 0.82721 0.91226 0.89639 0.91619 0.95374 0.92811 0.92076 0.82366 0.83749 0.83113 0.83814 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 14.32 67.78 0.97 -1.61 16 2 C -0.18 -3.56 8.94 25.64 0.23 -3.33 16 3 C 0.11 2.61 3.48 30.22 0.11 2.72 16 4 H 0.08 1.82 7.18 -2.38 -0.02 1.80 16 5 O -0.38 -10.31 11.19 -148.98 -1.67 -11.98 16 6 C 0.05 1.35 7.72 72.66 0.56 1.91 16 7 C -0.15 -4.12 6.88 31.90 0.22 -3.90 16 8 C 0.07 1.74 2.73 45.91 0.13 1.87 16 9 H 0.07 1.81 6.74 -2.39 -0.02 1.80 16 10 N -0.66 -19.69 5.57 -468.26 -2.61 -22.30 16 11 C 0.08 2.80 2.02 44.17 0.09 2.89 16 12 H 0.10 3.95 6.74 -2.39 -0.02 3.93 16 13 C -0.17 -4.96 8.88 71.98 0.64 -4.32 16 14 C 0.52 21.41 6.86 87.66 0.60 22.01 16 15 O -0.54 -23.43 12.98 -3.06 -0.04 -23.47 16 16 N -0.54 -23.72 2.69 -635.32 -1.71 -25.42 16 17 C 0.24 11.12 4.16 85.63 0.36 11.48 16 18 C -0.54 -27.82 8.84 25.60 0.23 -27.59 16 19 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 20 C 0.03 1.71 5.46 84.65 0.46 2.17 16 21 N -0.91 -47.97 13.29 21.45 0.28 -47.69 16 22 Si 0.95 41.14 29.54 68.60 2.03 43.17 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 C 0.14 5.98 6.49 38.15 0.25 6.22 16 27 C -0.19 -7.43 8.98 22.39 0.20 -7.23 16 28 C -0.10 -3.24 10.04 22.25 0.22 -3.02 16 29 C -0.15 -4.29 10.04 22.29 0.22 -4.06 16 30 C -0.10 -3.24 10.04 22.25 0.22 -3.01 16 31 C -0.17 -6.79 9.15 22.39 0.20 -6.58 16 32 H 0.11 1.56 7.85 -2.91 -0.02 1.54 16 33 H 0.12 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.07 2.29 8.06 -2.39 -0.02 2.27 16 38 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.35 9.47 7.80 -89.70 -0.70 8.77 16 40 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.08 2.10 7.45 -2.38 -0.02 2.09 16 42 H 0.06 2.15 5.83 -2.38 -0.01 2.14 16 43 H 0.03 1.41 6.33 -2.39 -0.02 1.40 16 44 H 0.05 2.49 4.48 -2.39 -0.01 2.48 16 45 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 46 H 0.16 6.52 4.71 -46.88 -0.22 6.30 16 47 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 48 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 49 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 50 H 0.11 5.00 6.29 -2.91 -0.02 4.98 16 Total: -1.00 -60.36 400.05 2.24 -58.12 By element: Atomic # 1 Polarization: 42.92 SS G_CDS: 0.04 Total: 42.96 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 5.91 Total: -13.39 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -4.03 Total: -95.42 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.71 Total: -35.45 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -60.36 2.24 -58.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451610313.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.280 kcal (2) G-P(sol) polarization free energy of solvation -60.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds