Wall clock time and date at job start Wed Apr 1 2020 03:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46575 * 2 1 4 4 N 1.46498 * 109.46872 * 119.99517 * 2 1 3 5 5 C 1.46498 * 120.00266 * 303.30796 * 4 2 1 6 6 C 1.50693 * 109.47524 * 270.00182 * 5 4 2 7 7 H 1.08003 * 119.99954 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00660 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00308 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99557 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47097 * 90.00221 * 10 8 6 12 12 H 1.48504 * 109.47112 * 210.00307 * 10 8 6 13 13 H 1.48504 * 109.47207 * 330.00111 * 10 8 6 14 14 C 1.34777 * 119.99879 * 123.31018 * 4 2 1 15 15 O 1.21283 * 120.00347 * 185.17953 * 14 4 2 16 16 C 1.50704 * 119.99658 * 5.18043 * 14 4 2 17 17 H 1.08997 * 109.47202 * 36.53567 * 16 14 4 18 18 C 1.52997 * 109.46873 * 276.53284 * 16 14 4 19 19 N 1.46502 * 109.46756 * 156.53680 * 16 14 4 20 20 C 1.34776 * 120.00073 * 204.99608 * 19 16 14 21 21 O 1.21702 * 119.99832 * 0.27843 * 20 19 16 22 22 C 1.46421 * 120.00436 * 179.97438 * 20 19 16 23 23 C 1.34805 * 120.00077 * 180.02562 * 22 20 19 24 24 C 1.47217 * 119.99774 * 180.02562 * 23 22 20 25 25 C 1.39830 * 120.17051 * 359.72834 * 24 23 22 26 26 C 1.37889 * 119.82638 * 179.69752 * 25 24 23 27 27 C 1.38405 * 120.16871 * 0.60027 * 26 25 24 28 28 C 1.38397 * 120.34616 * 359.67531 * 27 26 25 29 29 C 1.37890 * 120.16998 * 0.02562 * 28 27 26 30 30 H 1.08992 * 109.47812 * 299.99769 * 1 2 3 31 31 H 1.09003 * 109.47119 * 60.00366 * 1 2 3 32 32 H 1.09000 * 109.46692 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47322 * 240.00169 * 2 1 3 34 34 H 1.09005 * 109.46860 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47544 * 299.99505 * 3 2 1 36 36 H 1.09001 * 109.47453 * 59.99703 * 3 2 1 37 37 H 1.09000 * 109.46914 * 30.00448 * 5 4 2 38 38 H 1.09004 * 109.47367 * 149.99800 * 5 4 2 39 39 H 0.96998 * 119.99676 * 179.97438 * 9 8 6 40 40 H 1.08999 * 109.47277 * 55.08988 * 18 16 14 41 41 H 1.09007 * 109.46988 * 175.08808 * 18 16 14 42 42 H 1.09003 * 109.47629 * 295.08518 * 18 16 14 43 43 H 0.97002 * 120.00603 * 25.00076 * 19 16 14 44 44 H 1.08006 * 119.99677 * 0.02562 * 22 20 19 45 45 H 1.07993 * 120.00215 * 0.02562 * 23 22 20 46 46 H 1.08000 * 120.08604 * 359.97438 * 25 24 23 47 47 H 1.08004 * 119.91787 * 180.31490 * 26 25 24 48 48 H 1.08006 * 119.82643 * 179.69716 * 27 26 25 49 49 H 1.08002 * 119.92011 * 180.02562 * 28 27 26 50 50 H 1.08000 * 120.09201 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6056 -0.2336 2.5256 6 6 2.5835 0.7966 3.0287 7 1 3.4283 1.0822 2.4194 8 6 2.4005 1.3740 4.2673 9 7 3.2537 2.2734 4.7062 10 14 0.9398 0.8795 5.3215 11 1 1.3192 -0.2660 6.1870 12 1 0.5309 2.0273 6.1705 13 1 -0.1920 0.4842 4.4451 14 6 2.8472 -1.7461 1.0738 15 8 3.1767 -2.3758 2.0566 16 6 3.3648 -2.1441 -0.2845 17 1 3.5486 -1.2497 -0.8797 18 6 2.3275 -3.0210 -0.9886 19 7 4.6142 -2.8936 -0.1305 20 6 5.5110 -2.9224 -1.1362 21 8 5.2852 -2.3216 -2.1702 22 6 6.7599 -3.6710 -0.9822 23 6 7.6572 -3.6993 -1.9879 24 6 8.9126 -4.4524 -1.8332 25 6 9.1806 -5.1349 -0.6426 26 6 10.3559 -5.8433 -0.5077 27 6 11.2748 -5.8696 -1.5423 28 6 11.0195 -5.1919 -2.7217 29 6 9.8459 -4.4841 -2.8741 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8899 37 1 0.6111 0.2084 2.4653 38 1 1.5856 -1.0809 3.2110 39 1 3.1246 2.6798 5.5774 40 1 1.3728 -2.4963 -1.0253 41 1 2.6627 -3.2368 -2.0031 42 1 2.2079 -3.9548 -0.4392 43 1 4.7960 -3.3692 0.6951 44 1 6.9623 -4.2004 -0.0628 45 1 7.4550 -3.1696 -2.9070 46 1 8.4668 -5.1110 0.1676 47 1 10.5621 -6.3752 0.4094 48 1 12.1959 -6.4221 -1.4289 49 1 11.7411 -5.2174 -3.5248 50 1 9.6477 -3.9561 -3.7952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491402946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:32 Heat of formation + Delta-G solvation = -30.026031 kcal Electronic energy + Delta-G solvation = -29576.139327 eV Core-core repulsion = 25568.727910 eV Total energy + Delta-G solvation = -4007.411417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.27423 -39.52739 -38.88836 -36.26489 -34.93250 -34.19849 -32.77489 -31.36710 -31.18375 -30.99158 -29.55550 -27.95491 -26.82480 -25.07960 -23.90954 -22.94042 -22.26734 -21.48254 -20.75088 -19.74620 -18.36572 -17.87201 -17.12633 -16.90772 -16.30782 -16.14362 -15.41333 -15.27322 -15.05231 -14.71684 -14.48885 -14.13019 -13.86630 -13.70229 -13.66482 -13.55043 -13.45496 -13.27493 -12.88503 -12.54101 -12.35286 -12.30068 -12.24226 -11.82782 -11.74347 -11.57415 -11.56197 -11.39429 -11.24180 -10.98844 -10.90076 -10.59299 -10.55166 -10.36981 -10.13012 -9.97197 -9.51551 -9.29522 -9.27732 -8.94282 -8.60268 -8.50717 -7.80242 -6.10258 -4.08443 0.30308 1.07954 1.79315 2.94052 3.23767 3.26377 3.30058 3.33013 3.35208 3.63218 3.76542 4.37291 4.41744 4.46937 4.62640 4.71674 4.75380 4.97393 5.02538 5.08996 5.12845 5.18783 5.22589 5.23566 5.27322 5.45927 5.56221 5.59321 5.63705 5.66437 5.80138 5.84286 5.93081 5.99244 6.04809 6.14296 6.16620 6.19230 6.21321 6.30275 6.37616 6.44437 6.50957 6.62338 6.73357 6.91939 6.98049 7.26557 7.58313 7.59312 8.12458 8.26545 8.44031 8.78004 8.94539 9.49677 11.02738 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013813 B = 0.002283 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.528808 B =12260.228702 C =13340.320792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 C -0.159 4.159 4 N -0.580 5.580 5 C 0.214 3.786 6 C -0.524 4.524 7 H 0.077 0.923 8 C 0.072 3.928 9 N -0.896 5.896 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.509 3.491 15 O -0.541 6.541 16 C 0.122 3.878 17 H 0.109 0.891 18 C -0.157 4.157 19 N -0.703 5.703 20 C 0.549 3.451 21 O -0.549 6.549 22 C -0.200 4.200 23 C -0.027 4.027 24 C -0.072 4.072 25 C -0.102 4.102 26 C -0.122 4.122 27 C -0.113 4.113 28 C -0.124 4.124 29 C -0.097 4.097 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.034 0.966 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.411 0.589 44 H 0.131 0.869 45 H 0.137 0.863 46 H 0.129 0.871 47 H 0.125 0.875 48 H 0.123 0.877 49 H 0.125 0.875 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.498 -14.523 -15.615 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.023 3.977 3 C -0.217 4.217 4 N -0.311 5.311 5 C 0.093 3.907 6 C -0.563 4.563 7 H 0.095 0.905 8 C -0.130 4.130 9 N -0.535 5.535 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.294 3.706 15 O -0.419 6.419 16 C 0.013 3.987 17 H 0.127 0.873 18 C -0.216 4.216 19 N -0.356 5.356 20 C 0.338 3.662 21 O -0.429 6.429 22 C -0.221 4.221 23 C -0.047 4.047 24 C -0.072 4.072 25 C -0.120 4.120 26 C -0.140 4.140 27 C -0.131 4.131 28 C -0.142 4.142 29 C -0.115 4.115 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.248 0.752 44 H 0.148 0.852 45 H 0.155 0.845 46 H 0.147 0.853 47 H 0.143 0.857 48 H 0.141 0.859 49 H 0.143 0.857 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.496 -14.274 -15.620 22.448 hybrid contribution -0.545 -0.248 1.203 1.344 sum 6.951 -14.523 -14.417 21.612 Atomic orbital electron populations 1.22164 0.95223 1.01900 1.02725 1.21176 0.94349 0.94579 0.87623 1.22161 1.01710 0.95260 1.02565 1.47962 1.45984 1.28791 1.08344 1.19687 0.96037 0.95741 0.79193 1.21318 1.10968 1.21143 1.02830 0.90513 1.24848 0.96176 0.94721 0.97263 1.69893 1.36227 1.27712 1.19634 0.86898 0.83458 0.78466 0.81137 1.20001 1.21128 1.19097 1.20218 0.79640 0.80938 0.89790 1.90646 1.58306 1.53375 1.39546 1.20877 0.85269 0.96809 0.95732 0.87347 1.22121 0.98196 1.00189 1.01055 1.45687 1.18556 1.52486 1.18848 1.18269 0.83719 0.80853 0.83320 1.90793 1.78505 1.45313 1.28311 1.22940 0.94887 1.03345 1.00922 1.22341 0.90482 0.93243 0.98637 1.19077 0.94572 0.98821 0.94718 1.21502 0.97388 0.96189 0.96927 1.21137 0.94158 0.99468 0.99201 1.21319 0.99275 0.98928 0.93572 1.21114 0.97300 0.97854 0.97926 1.21399 0.93459 0.98356 0.98309 0.91361 0.91767 0.92752 0.90071 0.92531 0.92975 0.89864 0.94826 0.94554 0.92588 0.90912 0.91114 0.91699 0.75169 0.85158 0.84526 0.85283 0.85657 0.85944 0.85744 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.11 37.16 0.34 -1.86 16 2 C 0.13 2.01 2.61 -67.93 -0.18 1.83 16 3 C -0.16 -2.68 8.56 37.16 0.32 -2.36 16 4 N -0.58 -11.52 2.39 -167.47 -0.40 -11.92 16 5 C 0.21 5.03 3.79 -5.20 -0.02 5.01 16 6 C -0.52 -14.47 8.39 -34.44 -0.29 -14.76 16 7 H 0.08 2.34 7.85 -52.48 -0.41 1.93 16 8 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 10 Si 0.87 21.18 27.47 -169.99 -4.67 16.51 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 14 C 0.51 10.02 6.89 -10.98 -0.08 9.94 16 15 O -0.54 -12.40 15.53 5.55 0.09 -12.31 16 16 C 0.12 1.92 2.11 -69.08 -0.15 1.78 16 17 H 0.11 1.77 6.18 -51.93 -0.32 1.45 16 18 C -0.16 -2.02 9.13 37.16 0.34 -1.68 16 19 N -0.70 -10.48 5.05 -56.33 -0.28 -10.77 16 20 C 0.55 8.02 7.71 -12.97 -0.10 7.92 16 21 O -0.55 -9.41 15.89 5.19 0.08 -9.33 16 22 C -0.20 -2.30 9.41 -37.51 -0.35 -2.65 16 23 C -0.03 -0.29 9.46 -37.15 -0.35 -0.64 16 24 C -0.07 -0.69 5.87 -105.06 -0.62 -1.31 16 25 C -0.10 -0.91 9.41 -39.11 -0.37 -1.28 16 26 C -0.12 -0.95 10.03 -39.65 -0.40 -1.35 16 27 C -0.11 -0.82 10.04 -39.46 -0.40 -1.21 16 28 C -0.12 -0.91 10.03 -39.65 -0.40 -1.31 16 29 C -0.10 -0.81 9.80 -39.11 -0.38 -1.20 16 30 H 0.07 1.03 6.56 -51.93 -0.34 0.69 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.12 4.71 -51.93 -0.24 0.87 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.63 6.92 -51.93 -0.36 1.27 16 37 H 0.03 0.76 5.32 -51.93 -0.28 0.48 16 38 H 0.04 0.92 6.78 -51.93 -0.35 0.57 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.07 0.85 7.00 -51.93 -0.36 0.49 16 41 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.41 5.89 7.75 -40.82 -0.32 5.58 16 44 H 0.13 1.22 6.07 -52.48 -0.32 0.90 16 45 H 0.14 1.47 7.52 -52.49 -0.39 1.08 16 46 H 0.13 1.00 6.17 -52.49 -0.32 0.68 16 47 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 48 H 0.12 0.62 8.06 -52.48 -0.42 0.19 16 49 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 50 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 407.07 15.07 6.13 6.13 Total: -1.00 -34.20 407.07 -8.87 -43.07 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.42 Total: 8.16 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -3.17 Total: -3.18 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.09 Total: -49.06 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: 0.17 Total: -21.64 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.20 -8.87 -43.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491402946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.042 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds