Wall clock time and date at job start Wed Apr 1 2020 03:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46575 * 2 1 4 4 N 1.46498 * 109.46872 * 119.99517 * 2 1 3 5 5 C 1.46498 * 120.00266 * 303.30796 * 4 2 1 6 6 C 1.50693 * 109.47524 * 270.00182 * 5 4 2 7 7 H 1.08003 * 119.99954 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00660 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00308 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99557 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47097 * 90.00221 * 10 8 6 12 12 H 1.48504 * 109.47112 * 210.00307 * 10 8 6 13 13 H 1.48504 * 109.47207 * 330.00111 * 10 8 6 14 14 C 1.34777 * 119.99879 * 123.31018 * 4 2 1 15 15 O 1.21283 * 120.00347 * 185.17953 * 14 4 2 16 16 C 1.50704 * 119.99658 * 5.18043 * 14 4 2 17 17 H 1.08997 * 109.47202 * 36.53567 * 16 14 4 18 18 C 1.52997 * 109.46873 * 276.53284 * 16 14 4 19 19 N 1.46502 * 109.46756 * 156.53680 * 16 14 4 20 20 C 1.34776 * 120.00073 * 204.99608 * 19 16 14 21 21 O 1.21702 * 119.99832 * 0.27843 * 20 19 16 22 22 C 1.46421 * 120.00436 * 179.97438 * 20 19 16 23 23 C 1.34805 * 120.00077 * 180.02562 * 22 20 19 24 24 C 1.47217 * 119.99774 * 180.02562 * 23 22 20 25 25 C 1.39830 * 120.17051 * 359.72834 * 24 23 22 26 26 C 1.37889 * 119.82638 * 179.69752 * 25 24 23 27 27 C 1.38405 * 120.16871 * 0.60027 * 26 25 24 28 28 C 1.38397 * 120.34616 * 359.67531 * 27 26 25 29 29 C 1.37890 * 120.16998 * 0.02562 * 28 27 26 30 30 H 1.08992 * 109.47812 * 299.99769 * 1 2 3 31 31 H 1.09003 * 109.47119 * 60.00366 * 1 2 3 32 32 H 1.09000 * 109.46692 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47322 * 240.00169 * 2 1 3 34 34 H 1.09005 * 109.46860 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47544 * 299.99505 * 3 2 1 36 36 H 1.09001 * 109.47453 * 59.99703 * 3 2 1 37 37 H 1.09000 * 109.46914 * 30.00448 * 5 4 2 38 38 H 1.09004 * 109.47367 * 149.99800 * 5 4 2 39 39 H 0.96998 * 119.99676 * 179.97438 * 9 8 6 40 40 H 1.08999 * 109.47277 * 55.08988 * 18 16 14 41 41 H 1.09007 * 109.46988 * 175.08808 * 18 16 14 42 42 H 1.09003 * 109.47629 * 295.08518 * 18 16 14 43 43 H 0.97002 * 120.00603 * 25.00076 * 19 16 14 44 44 H 1.08006 * 119.99677 * 0.02562 * 22 20 19 45 45 H 1.07993 * 120.00215 * 0.02562 * 23 22 20 46 46 H 1.08000 * 120.08604 * 359.97438 * 25 24 23 47 47 H 1.08004 * 119.91787 * 180.31490 * 26 25 24 48 48 H 1.08006 * 119.82643 * 179.69716 * 27 26 25 49 49 H 1.08002 * 119.92011 * 180.02562 * 28 27 26 50 50 H 1.08000 * 120.09201 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6056 -0.2336 2.5256 6 6 2.5835 0.7966 3.0287 7 1 3.4283 1.0822 2.4194 8 6 2.4005 1.3740 4.2673 9 7 3.2537 2.2734 4.7062 10 14 0.9398 0.8795 5.3215 11 1 1.3192 -0.2660 6.1870 12 1 0.5309 2.0273 6.1705 13 1 -0.1920 0.4842 4.4451 14 6 2.8472 -1.7461 1.0738 15 8 3.1767 -2.3758 2.0566 16 6 3.3648 -2.1441 -0.2845 17 1 3.5486 -1.2497 -0.8797 18 6 2.3275 -3.0210 -0.9886 19 7 4.6142 -2.8936 -0.1305 20 6 5.5110 -2.9224 -1.1362 21 8 5.2852 -2.3216 -2.1702 22 6 6.7599 -3.6710 -0.9822 23 6 7.6572 -3.6993 -1.9879 24 6 8.9126 -4.4524 -1.8332 25 6 9.1806 -5.1349 -0.6426 26 6 10.3559 -5.8433 -0.5077 27 6 11.2748 -5.8696 -1.5423 28 6 11.0195 -5.1919 -2.7217 29 6 9.8459 -4.4841 -2.8741 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8899 37 1 0.6111 0.2084 2.4653 38 1 1.5856 -1.0809 3.2110 39 1 3.1246 2.6798 5.5774 40 1 1.3728 -2.4963 -1.0253 41 1 2.6627 -3.2368 -2.0031 42 1 2.2079 -3.9548 -0.4392 43 1 4.7960 -3.3692 0.6951 44 1 6.9623 -4.2004 -0.0628 45 1 7.4550 -3.1696 -2.9070 46 1 8.4668 -5.1110 0.1676 47 1 10.5621 -6.3752 0.4094 48 1 12.1959 -6.4221 -1.4289 49 1 11.7411 -5.2174 -3.5248 50 1 9.6477 -3.9561 -3.7952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491402946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:31 Heat of formation + Delta-G solvation = -51.294652 kcal Electronic energy + Delta-G solvation = -29577.061603 eV Core-core repulsion = 25568.727910 eV Total energy + Delta-G solvation = -4008.333694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.62727 -40.49773 -39.90476 -37.78283 -36.20515 -35.05403 -34.84718 -32.65189 -32.34569 -31.90000 -30.43434 -29.71166 -28.07515 -26.17572 -25.19202 -23.94706 -23.47523 -22.70873 -21.90177 -20.79843 -19.72805 -19.06374 -18.94446 -18.04191 -17.65831 -17.21728 -16.65314 -16.46258 -16.20980 -16.04110 -15.60105 -15.47345 -15.18867 -15.01015 -14.72666 -14.56471 -14.40775 -14.26361 -14.19073 -13.91265 -13.66137 -13.51968 -13.42501 -13.21620 -13.13001 -12.95197 -12.77871 -12.58854 -12.36882 -12.31013 -12.17648 -11.92776 -11.84995 -11.79290 -11.56624 -11.37109 -11.15248 -10.80425 -10.75746 -10.26851 -9.89449 -9.48663 -9.24743 -8.30933 -6.34232 -0.47526 0.48172 0.99123 1.32694 1.36125 1.44087 1.50586 1.93336 2.23300 2.31627 2.37126 2.95979 3.02723 3.35143 3.57837 3.81104 3.86861 3.98494 4.04666 4.06007 4.14032 4.21499 4.22746 4.34348 4.34601 4.52595 4.55156 4.59311 4.66642 4.75296 4.85485 4.87829 4.89604 4.96919 5.01132 5.02765 5.04917 5.11150 5.15909 5.19224 5.29230 5.39691 5.46070 5.53706 5.54101 5.58109 5.62191 5.66392 6.03967 6.25448 6.43195 6.58685 6.67208 7.08999 7.15582 7.31328 8.85640 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013813 B = 0.002283 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.528808 B =12260.228702 C =13340.320792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.120 3.880 3 C -0.154 4.154 4 N -0.585 5.585 5 C 0.224 3.776 6 C -0.521 4.521 7 H 0.031 0.969 8 C 0.011 3.989 9 N -0.946 5.946 10 Si 0.942 3.058 11 H -0.277 1.277 12 H -0.279 1.279 13 H -0.237 1.237 14 C 0.502 3.498 15 O -0.580 6.580 16 C 0.130 3.870 17 H 0.103 0.897 18 C -0.148 4.148 19 N -0.706 5.706 20 C 0.549 3.451 21 O -0.580 6.580 22 C -0.220 4.220 23 C -0.008 4.008 24 C -0.096 4.096 25 C -0.113 4.113 26 C -0.132 4.132 27 C -0.111 4.111 28 C -0.130 4.130 29 C -0.104 4.104 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.028 0.972 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.021 0.979 39 H 0.266 0.734 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.413 0.587 44 H 0.149 0.851 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.143 0.857 48 H 0.147 0.853 49 H 0.148 0.852 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.697 -16.292 -17.180 24.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.018 3.982 3 C -0.212 4.212 4 N -0.315 5.315 5 C 0.102 3.898 6 C -0.560 4.560 7 H 0.049 0.951 8 C -0.187 4.187 9 N -0.586 5.586 10 Si 0.765 3.235 11 H -0.203 1.203 12 H -0.204 1.204 13 H -0.161 1.161 14 C 0.289 3.711 15 O -0.461 6.461 16 C 0.021 3.979 17 H 0.121 0.879 18 C -0.206 4.206 19 N -0.359 5.359 20 C 0.340 3.660 21 O -0.462 6.462 22 C -0.241 4.241 23 C -0.028 4.028 24 C -0.096 4.096 25 C -0.131 4.131 26 C -0.150 4.150 27 C -0.129 4.129 28 C -0.147 4.147 29 C -0.122 4.122 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.047 0.953 35 H 0.109 0.891 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.250 0.750 44 H 0.166 0.834 45 H 0.150 0.850 46 H 0.152 0.848 47 H 0.161 0.839 48 H 0.165 0.835 49 H 0.166 0.834 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.680 -16.048 -17.228 24.474 hybrid contribution -0.075 0.307 1.589 1.620 sum 6.605 -15.741 -15.639 23.151 Atomic orbital electron populations 1.22142 0.92674 1.03103 1.03518 1.21532 0.96358 0.93516 0.86818 1.22097 0.99900 0.96392 1.02763 1.48052 1.46148 1.29049 1.08293 1.19344 0.95685 0.93821 0.80968 1.21479 1.10334 1.21776 1.02407 0.95076 1.25788 0.99458 0.94643 0.98821 1.70051 1.38726 1.29469 1.20379 0.85804 0.80372 0.77990 0.79345 1.20260 1.20414 1.16054 1.20936 0.78825 0.80370 0.90944 1.90614 1.59477 1.54755 1.41225 1.20828 0.86440 0.97545 0.93082 0.87880 1.22090 0.97811 0.99777 1.00943 1.45752 1.18576 1.52370 1.19162 1.18693 0.84219 0.80453 0.82600 1.90764 1.79226 1.46845 1.29352 1.22867 0.94048 1.04767 1.02374 1.22440 0.90567 0.91890 0.97896 1.19133 0.94611 1.00060 0.95838 1.21699 0.98151 0.96329 0.96905 1.21434 0.93860 0.99401 1.00282 1.21709 0.99867 0.98219 0.93109 1.21453 0.97290 0.97228 0.98763 1.21660 0.93619 0.98418 0.98454 0.93098 0.88417 0.91343 0.87420 0.95299 0.89125 0.93172 0.92897 0.96112 0.92465 0.89202 0.90212 0.91388 0.74957 0.83367 0.84979 0.84811 0.83906 0.83503 0.83387 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 9.11 71.98 0.66 -3.12 16 2 C 0.12 3.65 2.61 44.99 0.12 3.76 16 3 C -0.15 -5.17 8.56 71.98 0.62 -4.55 16 4 N -0.59 -23.26 2.39 -802.15 -1.92 -25.17 16 5 C 0.22 10.60 3.79 85.63 0.32 10.92 16 6 C -0.52 -29.91 8.39 25.60 0.21 -29.69 16 7 H 0.03 2.01 7.85 -2.91 -0.02 1.99 16 8 C 0.01 0.62 5.47 84.65 0.46 1.08 16 9 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 10 Si 0.94 43.97 27.47 68.60 1.88 45.85 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 14 C 0.50 19.96 6.89 87.66 0.60 20.56 16 15 O -0.58 -27.25 15.53 -3.04 -0.05 -27.30 16 16 C 0.13 4.06 2.11 44.25 0.09 4.15 16 17 H 0.10 3.35 6.18 -2.39 -0.01 3.33 16 18 C -0.15 -3.52 9.13 71.98 0.66 -2.87 16 19 N -0.71 -21.33 5.05 -450.33 -2.27 -23.61 16 20 C 0.55 16.23 7.71 86.37 0.67 16.90 16 21 O -0.58 -20.02 15.89 -4.36 -0.07 -20.09 16 22 C -0.22 -5.10 9.41 23.61 0.22 -4.88 16 23 C -0.01 -0.17 9.46 23.84 0.23 0.05 16 24 C -0.10 -1.80 5.87 -20.15 -0.12 -1.91 16 25 C -0.11 -1.93 9.41 22.57 0.21 -1.72 16 26 C -0.13 -1.84 10.03 22.23 0.22 -1.62 16 27 C -0.11 -1.34 10.04 22.35 0.22 -1.12 16 28 C -0.13 -1.62 10.03 22.22 0.22 -1.40 16 29 C -0.10 -1.60 9.80 22.57 0.22 -1.38 16 30 H 0.05 1.41 6.56 -2.39 -0.02 1.40 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.11 2.72 4.71 -2.39 -0.01 2.71 16 34 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.05 2.01 6.92 -2.39 -0.02 1.99 16 37 H 0.05 2.32 5.32 -2.39 -0.01 2.30 16 38 H 0.02 1.06 6.78 -2.38 -0.02 1.04 16 39 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 40 H 0.09 1.82 7.00 -2.39 -0.02 1.80 16 41 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.41 12.16 7.75 -92.71 -0.72 11.45 16 44 H 0.15 2.78 6.07 -2.91 -0.02 2.77 16 45 H 0.13 2.88 7.52 -2.91 -0.02 2.86 16 46 H 0.13 2.02 6.17 -2.91 -0.02 2.01 16 47 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 48 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 49 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 50 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -78.17 407.07 3.91 -74.27 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.18 Total: 32.06 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 5.85 Total: 3.17 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -3.89 Total: -107.97 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -0.12 Total: -47.38 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.85 kcal Total: -78.17 3.91 -74.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491402946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.971 kcal (2) G-P(sol) polarization free energy of solvation -78.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds