Wall clock time and date at job start Wed Apr 1 2020 03:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.46854 * 2 1 4 4 C 1.46904 * 111.00114 * 293.95312 * 3 2 1 5 5 C 1.53234 * 109.34046 * 187.25406 * 4 3 2 6 6 N 1.47075 * 108.52276 * 306.17232 * 5 4 3 7 7 C 1.34780 * 120.88163 * 231.20264 * 6 5 4 8 8 O 1.21719 * 119.99994 * 186.37964 * 7 6 5 9 9 C 1.46260 * 119.99936 * 6.38772 * 7 6 5 10 10 C 1.35018 * 119.99778 * 172.69345 * 9 7 6 11 11 C 1.46963 * 120.00066 * 345.70608 * 10 9 7 12 12 C 1.40018 * 120.09843 * 318.05610 * 11 10 9 13 13 C 1.37602 * 119.89313 * 179.69949 * 12 11 10 14 14 C 1.39175 * 120.10005 * 0.60521 * 13 12 11 15 15 O 1.35574 * 119.89662 * 179.69613 * 14 13 12 16 16 C 1.34784 * 117.00019 * 186.51212 * 15 14 13 17 17 H 1.08000 * 120.00053 * 5.81804 * 16 15 14 18 18 C 1.38720 * 120.00097 * 185.81677 * 16 15 14 19 19 N 1.31504 * 119.99805 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99997 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47256 * 59.99625 * 20 18 16 22 22 H 1.48504 * 109.47217 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47101 * 300.00109 * 20 18 16 24 24 C 1.39174 * 120.20722 * 359.66826 * 14 13 12 25 25 C 1.37601 * 120.09656 * 0.03181 * 24 14 13 26 26 C 1.47079 * 118.23730 * 51.18591 * 6 5 4 27 27 H 1.09004 * 109.62729 * 68.52385 * 26 6 5 28 28 C 1.52998 * 109.62758 * 188.90866 * 26 6 5 29 29 C 1.47328 * 110.93643 * 58.33365 * 3 2 1 30 30 H 1.09007 * 109.46962 * 299.99626 * 1 2 3 31 31 H 1.09001 * 109.47506 * 59.99904 * 1 2 3 32 32 H 1.09003 * 109.46944 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46979 * 240.00306 * 2 1 3 34 34 H 1.08994 * 109.47163 * 120.00077 * 2 1 3 35 35 H 1.09003 * 109.48878 * 67.29809 * 4 3 2 36 36 H 1.09001 * 109.51366 * 307.23222 * 4 3 2 37 37 H 1.09002 * 109.63128 * 186.45863 * 5 4 3 38 38 H 1.09007 * 109.78966 * 65.98054 * 5 4 3 39 39 H 1.07996 * 119.99833 * 352.69695 * 9 7 6 40 40 H 1.08001 * 119.99660 * 165.69567 * 10 9 7 41 41 H 1.07997 * 120.05580 * 0.02562 * 12 11 10 42 42 H 1.07998 * 119.95050 * 180.27253 * 13 12 11 43 43 H 0.97003 * 119.99639 * 179.97438 * 19 18 16 44 44 H 1.07994 * 119.95311 * 180.02562 * 24 14 13 45 45 H 1.08004 * 120.04593 * 180.02562 * 25 24 14 46 46 H 1.09005 * 109.47427 * 51.32263 * 28 26 6 47 47 H 1.09003 * 109.47128 * 171.32178 * 28 26 6 48 48 H 1.09000 * 109.47306 * 291.31999 * 28 26 6 49 49 H 1.09001 * 109.74880 * 52.84434 * 29 3 2 50 50 H 1.08996 * 109.45790 * 292.63328 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0670 -1.2533 5 6 2.3497 3.4399 -1.2907 6 7 1.9941 4.1707 -0.0649 7 6 1.5031 5.4245 -0.1249 8 8 1.3234 6.0573 0.8992 9 6 1.1862 6.0245 -1.4205 10 6 0.5588 7.2188 -1.4759 11 6 -0.0831 7.7682 -0.2734 12 6 -0.8246 6.9326 0.5706 13 6 -1.4187 7.4501 1.6987 14 6 -1.2939 8.8044 1.9945 15 8 -1.8861 9.3112 3.1038 16 6 -1.8430 10.6488 3.2635 17 1 -1.4361 11.2732 2.4819 18 6 -2.3213 11.2236 4.4320 19 7 -2.8173 10.4633 5.3835 20 14 -2.2622 13.0774 4.6531 21 1 -3.0566 13.7294 3.5812 22 1 -2.8301 13.4364 5.9775 23 1 -0.8533 13.5404 4.5761 24 6 -0.5627 9.6399 1.1553 25 6 0.0400 9.1299 0.0284 26 6 2.1882 3.4970 1.2280 27 1 3.2540 3.3746 1.4208 28 6 1.5570 4.3332 2.3431 29 6 1.5140 2.1221 1.1711 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.5890 2.1947 -1.3086 36 1 2.0096 1.4698 -2.0997 37 1 2.0040 3.9961 -2.1620 38 1 3.4314 3.3149 -1.3418 39 1 1.4540 5.5123 -2.3328 40 1 0.5288 7.7704 -2.4040 41 1 -0.9257 5.8825 0.3395 42 1 -1.9871 6.8056 2.3528 43 1 -3.1514 10.8652 6.2007 44 1 -0.4682 10.6900 1.3890 45 1 0.6076 9.7790 -0.6220 46 1 0.5291 4.5785 2.0759 47 1 1.5648 3.7642 3.2728 48 1 2.1274 5.2526 2.4751 49 1 1.7413 1.5676 2.0816 50 1 0.4352 2.2493 1.0821 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492919676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:54 Heat of formation + Delta-G solvation = 21.125245 kcal Electronic energy + Delta-G solvation = -30609.069088 eV Core-core repulsion = 26603.875757 eV Total energy + Delta-G solvation = -4005.193331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.55629 -39.02889 -38.30890 -36.52824 -35.03489 -33.65662 -32.49914 -31.94659 -30.71851 -30.12218 -28.29991 -27.60188 -25.99116 -25.44578 -23.72731 -23.44167 -21.93672 -21.60563 -20.99424 -19.90564 -18.24999 -17.85755 -17.15487 -16.73147 -16.10724 -15.73827 -15.59735 -15.21119 -14.88664 -14.54440 -14.50740 -14.32864 -13.97739 -13.73522 -13.57410 -13.17013 -13.07555 -12.99330 -12.72012 -12.61593 -12.38577 -12.32594 -12.21265 -12.03410 -11.92057 -11.68473 -11.52385 -11.31105 -11.20022 -11.08362 -10.96214 -10.91861 -10.61966 -10.59540 -10.38715 -9.45122 -9.15370 -8.89152 -8.77528 -8.64695 -8.37974 -7.90628 -6.85492 -6.45967 -4.01605 1.24585 2.42314 2.70666 3.04840 3.13733 3.16070 3.17549 3.56146 3.68212 3.97210 4.53933 4.59045 4.70064 4.72394 4.82318 4.89516 4.98342 5.01005 5.06956 5.12738 5.15443 5.26940 5.29487 5.33241 5.42096 5.48267 5.51579 5.58305 5.62276 5.67423 5.70887 5.74824 5.84800 5.87753 5.92572 6.24558 6.29546 6.31539 6.43798 6.51608 6.62022 6.68593 6.72692 6.79768 6.86684 7.03734 7.12249 7.35650 7.45404 7.50249 7.63770 7.92128 8.00434 8.58369 8.99609 9.71703 10.71831 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.002452 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.456445 B =11418.302160 C =12240.600791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.051 3.949 3 N -0.537 5.537 4 C 0.038 3.962 5 C 0.113 3.887 6 N -0.618 5.618 7 C 0.544 3.456 8 O -0.504 6.504 9 C -0.273 4.273 10 C 0.027 3.973 11 C -0.185 4.185 12 C 0.008 3.992 13 C -0.201 4.201 14 C 0.171 3.829 15 O -0.172 6.172 16 C -0.390 4.390 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.860 5.860 20 Si 0.941 3.059 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.248 4.248 25 C -0.042 4.042 26 C 0.153 3.847 27 H 0.071 0.929 28 C -0.139 4.139 29 C 0.043 3.957 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.113 0.887 43 H 0.271 0.729 44 H 0.125 0.875 45 H 0.106 0.894 46 H 0.067 0.933 47 H 0.042 0.958 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.253 -17.543 -14.727 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.077 4.077 3 N -0.261 5.261 4 C -0.091 4.091 5 C -0.010 4.010 6 N -0.354 5.354 7 C 0.336 3.664 8 O -0.380 6.380 9 C -0.294 4.294 10 C 0.007 3.993 11 C -0.186 4.186 12 C -0.010 4.010 13 C -0.221 4.221 14 C 0.116 3.884 15 O -0.074 6.074 16 C -0.466 4.466 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.194 1.194 24 C -0.267 4.267 25 C -0.060 4.060 26 C 0.049 3.951 27 H 0.089 0.911 28 C -0.197 4.197 29 C -0.086 4.086 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.117 0.883 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.143 0.857 45 H 0.124 0.876 46 H 0.085 0.915 47 H 0.061 0.939 48 H 0.103 0.897 49 H 0.102 0.898 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.430 -17.268 -13.675 23.961 hybrid contribution -0.685 0.690 -0.127 0.980 sum 8.746 -16.579 -13.802 23.278 Atomic orbital electron populations 1.22450 0.98097 1.02383 1.02336 1.22164 0.92999 0.89726 1.02812 1.62284 1.59315 1.02133 1.02380 1.22510 0.98739 0.95231 0.92590 1.21811 0.99978 0.91398 0.87858 1.48172 1.66041 1.14630 1.06537 1.18420 0.77309 0.80404 0.90264 1.91017 1.51876 1.60108 1.34988 1.22741 1.10334 0.99997 0.96361 1.22327 0.87889 0.92235 0.96801 1.18281 1.07648 0.93789 0.98870 1.20429 0.92552 0.96290 0.91765 1.19983 1.08698 0.93211 1.00179 1.19537 0.89457 0.92386 0.87026 1.83927 1.64028 1.24468 1.35007 1.21333 1.42897 0.78858 1.03509 0.88995 1.25325 0.96230 1.00600 0.94389 1.70013 1.36986 1.35897 1.06478 0.85774 0.79024 0.80509 0.78104 1.19442 1.20252 1.19440 1.20961 1.06396 1.00762 0.98615 1.20759 0.96127 0.93336 0.95772 1.21241 0.99583 0.90544 0.83722 0.91071 1.22174 1.02903 0.99661 0.94917 1.22703 0.97884 0.94405 0.93572 0.92226 0.92545 0.92067 0.90708 0.90570 0.94013 0.89847 0.89100 0.91111 0.86121 0.86229 0.88287 0.86936 0.91887 0.85684 0.87630 0.91451 0.93941 0.89735 0.89792 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 9.23 37.16 0.34 -1.04 16 2 C 0.05 0.36 6.07 -3.82 -0.02 0.33 16 3 N -0.54 -4.69 4.83 -233.96 -1.13 -5.82 16 4 C 0.04 0.30 5.17 -3.70 -0.02 0.28 16 5 C 0.11 0.99 6.52 -3.61 -0.02 0.97 16 6 N -0.62 -7.50 3.01 -166.62 -0.50 -8.00 16 7 C 0.54 8.10 6.34 -13.04 -0.08 8.02 16 8 O -0.50 -9.40 8.19 5.17 0.04 -9.35 16 9 C -0.27 -3.50 9.19 -37.50 -0.34 -3.84 16 10 C 0.03 0.38 9.80 -37.19 -0.36 0.02 16 11 C -0.18 -3.39 4.52 -105.03 -0.47 -3.86 16 12 C 0.01 0.16 6.71 -39.15 -0.26 -0.10 16 13 C -0.20 -4.57 9.97 -39.47 -0.39 -4.96 16 14 C 0.17 4.32 6.66 -38.89 -0.26 4.06 16 15 O -0.17 -5.04 9.74 0.72 0.01 -5.04 16 16 C -0.39 -11.09 9.43 30.91 0.29 -10.80 16 17 H 0.09 2.42 5.30 -52.49 -0.28 2.14 16 18 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 19 N -0.86 -25.49 13.67 55.48 0.76 -24.74 16 20 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 24 C -0.25 -5.65 9.10 -39.47 -0.36 -6.00 16 25 C -0.04 -0.80 9.78 -39.15 -0.38 -1.19 16 26 C 0.15 1.83 3.64 -67.50 -0.25 1.58 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 C -0.14 -2.00 7.64 37.16 0.28 -1.71 16 29 C 0.04 0.43 4.26 -3.47 -0.01 0.41 16 30 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 31 H 0.06 0.42 6.72 -51.93 -0.35 0.08 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.04 0.37 6.83 -51.93 -0.35 0.01 16 36 H 0.08 0.51 8.04 -51.93 -0.42 0.09 16 37 H 0.09 0.66 5.37 -51.93 -0.28 0.38 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.12 1.13 5.90 -52.49 -0.31 0.82 16 40 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.10 1.80 7.04 -52.49 -0.37 1.43 16 42 H 0.11 2.50 8.06 -52.49 -0.42 2.08 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.13 2.83 5.71 -52.49 -0.30 2.53 16 45 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 46 H 0.07 1.11 6.94 -51.93 -0.36 0.75 16 47 H 0.04 0.53 8.13 -51.93 -0.42 0.11 16 48 H 0.08 1.44 6.62 -51.93 -0.34 1.09 16 49 H 0.08 0.77 8.12 -51.93 -0.42 0.34 16 50 H 0.04 0.49 6.70 -51.93 -0.35 0.14 16 LS Contribution 386.90 15.07 5.83 5.83 Total: -1.00 -32.60 386.90 -9.85 -42.45 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.41 Total: 5.80 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -2.43 Total: -16.83 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.87 Total: -38.55 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.05 Total: -14.39 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.60 -9.85 -42.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492919676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.571 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds