Wall clock time and date at job start Wed Apr 1 2020 03:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.46854 * 2 1 4 4 C 1.46904 * 111.00114 * 293.95312 * 3 2 1 5 5 C 1.53234 * 109.34046 * 187.25406 * 4 3 2 6 6 N 1.47075 * 108.52276 * 306.17232 * 5 4 3 7 7 C 1.34780 * 120.88163 * 231.20264 * 6 5 4 8 8 O 1.21719 * 119.99994 * 186.37964 * 7 6 5 9 9 C 1.46260 * 119.99936 * 6.38772 * 7 6 5 10 10 C 1.35018 * 119.99778 * 172.69345 * 9 7 6 11 11 C 1.46963 * 120.00066 * 345.70608 * 10 9 7 12 12 C 1.40018 * 120.09843 * 318.05610 * 11 10 9 13 13 C 1.37602 * 119.89313 * 179.69949 * 12 11 10 14 14 C 1.39175 * 120.10005 * 0.60521 * 13 12 11 15 15 O 1.35574 * 119.89662 * 179.69613 * 14 13 12 16 16 C 1.34784 * 117.00019 * 186.51212 * 15 14 13 17 17 H 1.08000 * 120.00053 * 5.81804 * 16 15 14 18 18 C 1.38720 * 120.00097 * 185.81677 * 16 15 14 19 19 N 1.31504 * 119.99805 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99997 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47256 * 59.99625 * 20 18 16 22 22 H 1.48504 * 109.47217 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47101 * 300.00109 * 20 18 16 24 24 C 1.39174 * 120.20722 * 359.66826 * 14 13 12 25 25 C 1.37601 * 120.09656 * 0.03181 * 24 14 13 26 26 C 1.47079 * 118.23730 * 51.18591 * 6 5 4 27 27 H 1.09004 * 109.62729 * 68.52385 * 26 6 5 28 28 C 1.52998 * 109.62758 * 188.90866 * 26 6 5 29 29 C 1.47328 * 110.93643 * 58.33365 * 3 2 1 30 30 H 1.09007 * 109.46962 * 299.99626 * 1 2 3 31 31 H 1.09001 * 109.47506 * 59.99904 * 1 2 3 32 32 H 1.09003 * 109.46944 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46979 * 240.00306 * 2 1 3 34 34 H 1.08994 * 109.47163 * 120.00077 * 2 1 3 35 35 H 1.09003 * 109.48878 * 67.29809 * 4 3 2 36 36 H 1.09001 * 109.51366 * 307.23222 * 4 3 2 37 37 H 1.09002 * 109.63128 * 186.45863 * 5 4 3 38 38 H 1.09007 * 109.78966 * 65.98054 * 5 4 3 39 39 H 1.07996 * 119.99833 * 352.69695 * 9 7 6 40 40 H 1.08001 * 119.99660 * 165.69567 * 10 9 7 41 41 H 1.07997 * 120.05580 * 0.02562 * 12 11 10 42 42 H 1.07998 * 119.95050 * 180.27253 * 13 12 11 43 43 H 0.97003 * 119.99639 * 179.97438 * 19 18 16 44 44 H 1.07994 * 119.95311 * 180.02562 * 24 14 13 45 45 H 1.08004 * 120.04593 * 180.02562 * 25 24 14 46 46 H 1.09005 * 109.47427 * 51.32263 * 28 26 6 47 47 H 1.09003 * 109.47128 * 171.32178 * 28 26 6 48 48 H 1.09000 * 109.47306 * 291.31999 * 28 26 6 49 49 H 1.09001 * 109.74880 * 52.84434 * 29 3 2 50 50 H 1.08996 * 109.45790 * 292.63328 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0670 -1.2533 5 6 2.3497 3.4399 -1.2907 6 7 1.9941 4.1707 -0.0649 7 6 1.5031 5.4245 -0.1249 8 8 1.3234 6.0573 0.8992 9 6 1.1862 6.0245 -1.4205 10 6 0.5588 7.2188 -1.4759 11 6 -0.0831 7.7682 -0.2734 12 6 -0.8246 6.9326 0.5706 13 6 -1.4187 7.4501 1.6987 14 6 -1.2939 8.8044 1.9945 15 8 -1.8861 9.3112 3.1038 16 6 -1.8430 10.6488 3.2635 17 1 -1.4361 11.2732 2.4819 18 6 -2.3213 11.2236 4.4320 19 7 -2.8173 10.4633 5.3835 20 14 -2.2622 13.0774 4.6531 21 1 -3.0566 13.7294 3.5812 22 1 -2.8301 13.4364 5.9775 23 1 -0.8533 13.5404 4.5761 24 6 -0.5627 9.6399 1.1553 25 6 0.0400 9.1299 0.0284 26 6 2.1882 3.4970 1.2280 27 1 3.2540 3.3746 1.4208 28 6 1.5570 4.3332 2.3431 29 6 1.5140 2.1221 1.1711 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.5890 2.1947 -1.3086 36 1 2.0096 1.4698 -2.0997 37 1 2.0040 3.9961 -2.1620 38 1 3.4314 3.3149 -1.3418 39 1 1.4540 5.5123 -2.3328 40 1 0.5288 7.7704 -2.4040 41 1 -0.9257 5.8825 0.3395 42 1 -1.9871 6.8056 2.3528 43 1 -3.1514 10.8652 6.2007 44 1 -0.4682 10.6900 1.3890 45 1 0.6076 9.7790 -0.6220 46 1 0.5291 4.5785 2.0759 47 1 1.5648 3.7642 3.2728 48 1 2.1274 5.2526 2.4751 49 1 1.7413 1.5676 2.0816 50 1 0.4352 2.2493 1.0821 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492919676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:53 Heat of formation + Delta-G solvation = -0.242578 kcal Electronic energy + Delta-G solvation = -30609.995666 eV Core-core repulsion = 26603.875757 eV Total energy + Delta-G solvation = -4006.119909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.62074 -40.67649 -39.42785 -38.13173 -36.03943 -34.88381 -34.25222 -33.27106 -31.83186 -31.44952 -29.63754 -28.70463 -27.42873 -26.83547 -24.98448 -24.12593 -23.56625 -22.95720 -22.09413 -20.94326 -19.91375 -19.28490 -18.66281 -18.10341 -17.14873 -16.56014 -16.46049 -16.35216 -16.28791 -16.08055 -15.79978 -15.61812 -15.49316 -15.04953 -14.76051 -14.53035 -14.35522 -14.31316 -13.97724 -13.76495 -13.57770 -13.52821 -13.30669 -13.24130 -12.97187 -12.91226 -12.78563 -12.61014 -12.38600 -12.30276 -12.17699 -12.13243 -11.95833 -11.93156 -11.59127 -11.27395 -10.87574 -10.34699 -10.10415 -9.73941 -9.52316 -9.16981 -8.53898 -8.49357 -6.16137 -0.01939 0.70815 1.13201 1.33022 1.46486 1.50164 2.09376 2.16851 2.48227 2.86634 2.91312 3.22411 3.49587 3.68255 3.86495 3.94954 3.99284 4.07799 4.12267 4.15555 4.18680 4.29336 4.30505 4.34428 4.42886 4.51296 4.54493 4.56975 4.62516 4.72315 4.74530 4.81275 4.85578 4.93788 5.01254 5.03865 5.05395 5.09374 5.16395 5.22264 5.27827 5.30881 5.36147 5.46439 5.65956 5.71206 5.72718 5.85449 6.00486 6.01379 6.08998 6.24348 6.61226 6.94850 7.44264 7.77173 8.74106 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.002452 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.456445 B =11418.302160 C =12240.600791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.052 3.948 3 N -0.541 5.541 4 C 0.039 3.961 5 C 0.108 3.892 6 N -0.613 5.613 7 C 0.527 3.473 8 O -0.553 6.553 9 C -0.239 4.239 10 C 0.006 3.994 11 C -0.155 4.155 12 C 0.012 3.988 13 C -0.217 4.217 14 C 0.127 3.873 15 O -0.231 6.231 16 C -0.415 4.415 17 H 0.102 0.898 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.021 2.979 21 H -0.255 1.255 22 H -0.270 1.270 23 H -0.258 1.258 24 C -0.256 4.256 25 C -0.047 4.047 26 C 0.154 3.846 27 H 0.076 0.924 28 C -0.127 4.127 29 C 0.053 3.947 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.273 0.727 44 H 0.119 0.881 45 H 0.147 0.853 46 H 0.039 0.961 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.091 0.909 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.764 -19.036 -19.471 29.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.075 4.075 3 N -0.265 5.265 4 C -0.090 4.090 5 C -0.014 4.014 6 N -0.347 5.347 7 C 0.319 3.681 8 O -0.433 6.433 9 C -0.259 4.259 10 C -0.013 4.013 11 C -0.156 4.156 12 C -0.006 4.006 13 C -0.237 4.237 14 C 0.077 3.923 15 O -0.137 6.137 16 C -0.491 4.491 17 H 0.119 0.881 18 C -0.222 4.222 19 N -0.559 5.559 20 Si 0.840 3.160 21 H -0.179 1.179 22 H -0.195 1.195 23 H -0.182 1.182 24 C -0.275 4.275 25 C -0.065 4.065 26 C 0.050 3.950 27 H 0.094 0.906 28 C -0.185 4.185 29 C -0.076 4.076 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.100 0.900 39 H 0.188 0.812 40 H 0.185 0.815 41 H 0.132 0.868 42 H 0.117 0.883 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.165 0.835 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.109 0.891 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 11.983 -18.839 -18.509 29.001 hybrid contribution -1.203 0.699 1.006 1.717 sum 10.780 -18.140 -17.503 27.415 Atomic orbital electron populations 1.22408 0.98335 1.02791 1.01340 1.22226 0.92691 0.88739 1.03869 1.62308 1.59260 1.02804 1.02113 1.22580 0.98244 0.95153 0.93009 1.22137 1.00899 0.91688 0.86706 1.48283 1.64525 1.14047 1.07870 1.19040 0.77227 0.81087 0.90698 1.91040 1.53815 1.61624 1.36776 1.23179 1.07319 0.98503 0.96882 1.22571 0.89158 0.93165 0.96394 1.18845 1.04519 0.93154 0.99084 1.20601 0.91960 0.97161 0.90869 1.20138 1.09487 0.92510 1.01556 1.20005 0.91340 0.93729 0.87268 1.83890 1.67331 1.25002 1.37480 1.21828 1.43602 0.79255 1.04393 0.88059 1.26676 0.95462 1.06417 0.93598 1.70171 1.39760 1.38483 1.07493 0.84622 0.79686 0.73192 0.78526 1.17864 1.19486 1.18182 1.21096 1.06573 1.00348 0.99531 1.21190 0.95756 0.94600 0.94979 1.21191 0.99667 0.91066 0.83060 0.90585 1.21957 1.00806 0.98954 0.96812 1.22519 0.96680 0.93445 0.94958 0.93901 0.92820 0.90994 0.88927 0.90286 0.94840 0.87100 0.86774 0.89984 0.81169 0.81452 0.86786 0.88296 0.91759 0.86291 0.83485 0.94197 0.92812 0.92858 0.89074 0.95241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.30 9.23 71.98 0.66 -1.64 16 2 C 0.05 0.57 6.07 86.30 0.52 1.10 16 3 N -0.54 -7.74 4.83 -894.12 -4.32 -12.06 16 4 C 0.04 0.45 5.17 86.38 0.45 0.89 16 5 C 0.11 1.36 6.52 86.35 0.56 1.92 16 6 N -0.61 -13.21 3.01 -799.26 -2.41 -15.61 16 7 C 0.53 14.37 6.34 86.33 0.55 14.92 16 8 O -0.55 -20.56 8.19 -4.41 -0.04 -20.60 16 9 C -0.24 -4.82 9.19 23.62 0.22 -4.60 16 10 C 0.01 0.15 9.80 23.82 0.23 0.38 16 11 C -0.16 -5.37 4.52 -20.13 -0.09 -5.46 16 12 C 0.01 0.49 6.71 22.55 0.15 0.64 16 13 C -0.22 -10.61 9.97 22.34 0.22 -10.39 16 14 C 0.13 6.95 6.66 22.72 0.15 7.10 16 15 O -0.23 -14.83 9.74 -20.34 -0.20 -15.03 16 16 C -0.41 -25.35 9.43 67.94 0.64 -24.71 16 17 H 0.10 5.67 5.30 -2.91 -0.02 5.65 16 18 C -0.02 -1.42 5.49 84.86 0.47 -0.96 16 19 N -0.92 -58.71 13.67 21.62 0.30 -58.41 16 20 Si 1.02 44.30 29.55 68.60 2.03 46.33 16 21 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 24 C -0.26 -12.11 9.10 22.34 0.20 -11.90 16 25 C -0.05 -1.77 9.78 22.55 0.22 -1.55 16 26 C 0.15 3.52 3.64 44.96 0.16 3.68 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 C -0.13 -3.82 7.64 71.98 0.55 -3.28 16 29 C 0.05 0.98 4.26 86.30 0.37 1.35 16 30 H 0.04 0.66 6.54 -2.38 -0.02 0.65 16 31 H 0.05 0.68 6.72 -2.39 -0.02 0.66 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.73 8.05 -2.39 -0.02 0.71 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.03 0.47 6.83 -2.39 -0.02 0.45 16 36 H 0.11 0.75 8.04 -2.39 -0.02 0.73 16 37 H 0.11 0.89 5.37 -2.39 -0.01 0.88 16 38 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.17 1.83 5.90 -2.91 -0.02 1.81 16 40 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 41 H 0.11 4.11 7.04 -2.91 -0.02 4.09 16 42 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 43 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 44 H 0.12 5.64 5.71 -2.91 -0.02 5.62 16 45 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 46 H 0.04 1.39 6.94 -2.38 -0.02 1.38 16 47 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 48 H 0.05 1.92 6.62 -2.39 -0.02 1.91 16 49 H 0.09 1.55 8.12 -2.39 -0.02 1.53 16 50 H 0.03 0.64 6.70 -2.39 -0.02 0.62 16 Total: -1.00 -81.45 386.90 2.55 -78.90 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.95 Total: 28.98 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 6.24 Total: -32.50 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -6.43 Total: -86.08 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -0.23 Total: -35.63 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -81.45 2.55 -78.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492919676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.658 kcal (2) G-P(sol) polarization free energy of solvation -81.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds