Wall clock time and date at job start Wed Apr 1 2020 04:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47304 * 2 1 4 4 C 1.46498 * 120.00110 * 275.00485 * 3 2 1 5 5 C 1.50702 * 109.46805 * 274.99791 * 4 3 2 6 6 H 1.07998 * 120.00486 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99986 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99914 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00185 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47313 * 59.99467 * 9 7 5 11 11 H 1.48497 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46925 * 299.99768 * 9 7 5 13 13 S 1.65596 * 120.00190 * 94.99770 * 3 2 1 14 14 O 1.42093 * 106.40500 * 156.46191 * 13 3 2 15 15 O 1.42103 * 106.40213 * 23.54331 * 13 3 2 16 16 N 1.65602 * 107.22097 * 270.00754 * 13 3 2 17 17 C 1.47097 * 120.94508 * 266.35507 * 16 13 3 18 18 C 1.53113 * 109.12501 * 233.40148 * 17 16 13 19 19 C 1.53168 * 109.66257 * 306.10525 * 18 17 16 20 20 H 1.08998 * 109.52187 * 300.73678 * 19 18 17 21 21 C 1.53005 * 109.51495 * 180.62628 * 19 18 17 22 22 C 1.52782 * 109.18912 * 60.71566 * 19 18 17 23 23 H 1.08994 * 109.38727 * 57.70457 * 22 19 18 24 24 C 1.52802 * 110.70118 * 178.01593 * 22 19 18 25 25 C 1.53139 * 109.02780 * 181.02318 * 24 22 19 26 26 C 1.52917 * 109.86801 * 300.43937 * 25 24 22 27 27 C 1.53149 * 109.84878 * 59.06297 * 26 25 24 28 28 C 1.46675 * 120.91271 * 86.30280 * 16 13 3 29 29 H 1.08995 * 109.59538 * 244.98120 * 28 16 13 30 30 H 1.08997 * 109.47001 * 60.00229 * 1 2 3 31 31 H 1.09001 * 109.46944 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46856 * 299.99722 * 1 2 3 33 33 H 1.08998 * 109.46856 * 240.00278 * 2 1 3 34 34 H 1.08999 * 109.47425 * 120.00408 * 2 1 3 35 35 H 1.09006 * 109.47345 * 34.99238 * 4 3 2 36 36 H 1.08993 * 109.47640 * 154.99526 * 4 3 2 37 37 H 0.96998 * 120.00143 * 180.02562 * 8 7 5 38 38 H 1.09000 * 109.56520 * 113.48281 * 17 16 13 39 39 H 1.09006 * 109.48710 * 353.27224 * 17 16 13 40 40 H 1.08991 * 109.43138 * 186.05777 * 18 17 16 41 41 H 1.08996 * 109.42918 * 66.15153 * 18 17 16 42 42 H 1.09002 * 109.47251 * 60.00010 * 21 19 18 43 43 H 1.09001 * 109.47103 * 179.97438 * 21 19 18 44 44 H 1.08999 * 109.47335 * 299.99749 * 21 19 18 45 45 H 1.09004 * 109.53845 * 300.88297 * 24 22 19 46 46 H 1.08995 * 109.54752 * 61.15005 * 24 22 19 47 47 H 1.09002 * 109.40421 * 180.31864 * 25 24 22 48 48 H 1.09007 * 109.40630 * 60.56340 * 25 24 22 49 49 H 1.08999 * 109.40692 * 298.94637 * 26 25 24 50 50 H 1.08998 * 109.34451 * 179.14186 * 26 25 24 51 51 H 1.08998 * 109.54447 * 180.56223 * 27 26 25 52 52 H 1.08999 * 109.62300 * 60.32927 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1721 1.1111 -1.3840 7 6 3.8529 2.3614 -3.0844 8 7 3.0280 3.1864 -3.6915 9 14 5.5092 1.9644 -3.8513 10 1 5.5985 0.5045 -4.1086 11 1 5.6511 2.7019 -5.1324 12 1 6.5948 2.3706 -2.9229 13 16 2.4122 2.1202 1.4286 14 8 3.3284 3.1570 1.1049 15 8 2.7096 1.0799 2.3499 16 7 1.0431 2.8641 1.9895 17 6 0.7699 4.2766 1.6825 18 6 0.5087 5.0322 2.9883 19 6 -0.5994 4.3290 3.7780 20 1 -1.5093 4.2966 3.1787 21 6 -0.8685 5.0956 5.0745 22 6 -0.1540 2.9057 4.1096 23 1 0.7783 2.9404 4.6731 24 6 -1.2159 2.1873 4.9410 25 6 -0.7204 0.7767 5.2726 26 6 -0.4592 0.0007 3.9811 27 6 0.5869 0.7339 3.1364 28 6 0.0684 2.1324 2.8054 29 1 -0.8745 2.0525 2.2645 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.3617 1.8097 -1.9453 36 1 2.0921 3.1802 -1.0756 37 1 3.2798 3.5890 -4.5373 38 1 -0.1069 4.3472 1.0390 39 1 1.6313 4.7117 1.1757 40 1 0.2006 6.0527 2.7613 41 1 1.4213 5.0530 3.5840 42 1 -1.1812 6.1125 4.8372 43 1 -1.6575 4.5948 5.6356 44 1 0.0412 5.1259 5.6742 45 1 -1.3904 2.7390 5.8647 46 1 -2.1433 2.1238 4.3719 47 1 -1.4761 0.2565 5.8611 48 1 0.2029 0.8431 5.8482 49 1 -1.3871 -0.0838 3.4154 50 1 -0.0927 -0.9960 4.2266 51 1 0.7619 0.1819 2.2129 52 1 1.5189 0.8133 3.6959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548758747.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:01 Heat of formation + Delta-G solvation = -86.355754 kcal Electronic energy + Delta-G solvation = -31924.066996 eV Core-core repulsion = 28049.656891 eV Total energy + Delta-G solvation = -3874.410106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.06951 -37.04170 -36.04100 -35.63297 -35.13537 -34.29175 -32.65817 -30.34433 -30.15928 -29.44223 -27.64433 -26.55772 -23.59547 -23.11030 -22.82446 -22.10033 -21.58093 -20.11273 -19.81717 -18.21804 -17.23580 -16.56257 -16.15996 -16.07535 -15.32785 -15.10966 -14.77472 -14.51924 -14.30328 -13.98178 -13.77164 -13.54078 -13.32451 -13.14858 -13.08822 -12.84857 -12.47948 -12.34670 -12.06383 -12.01639 -11.87883 -11.78313 -11.66592 -11.36946 -11.29369 -11.15988 -11.10172 -10.99905 -10.95484 -10.92049 -10.77552 -10.55906 -10.43746 -10.36137 -10.14968 -9.93505 -9.86293 -9.75479 -9.62536 -8.70971 -8.41415 -8.01996 -6.04400 -4.08105 1.26016 3.34756 3.38125 3.42733 3.49858 4.10714 4.46020 4.51618 4.60034 4.66121 4.86064 4.96639 5.02083 5.07425 5.15577 5.26505 5.30958 5.38043 5.41174 5.43997 5.47194 5.53240 5.59676 5.65104 5.68394 5.72564 5.73048 5.75856 5.85312 5.87395 5.95115 6.00856 6.03069 6.07225 6.08730 6.12251 6.15663 6.23735 6.26407 6.33217 6.43743 6.51711 6.62559 6.65999 6.78311 6.94014 7.27888 7.45578 7.66962 7.93392 8.23445 8.93878 9.56822 11.04095 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.004092 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.373201 B = 6841.746413 C = 7628.842518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.116 3.884 3 N -0.991 5.991 4 C 0.260 3.740 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.776 3.224 14 O -0.967 6.967 15 O -0.992 6.992 16 N -1.006 6.006 17 C 0.120 3.880 18 C -0.126 4.126 19 C -0.085 4.085 20 H 0.070 0.930 21 C -0.147 4.147 22 C -0.090 4.090 23 H 0.073 0.927 24 C -0.112 4.112 25 C -0.121 4.121 26 C -0.114 4.114 27 C -0.163 4.163 28 C 0.163 3.837 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.058 0.942 50 H 0.065 0.935 51 H 0.081 0.919 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.327 -1.278 16.271 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.011 4.011 3 N -0.832 5.832 4 C 0.138 3.862 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.787 3.213 14 O -0.951 6.951 15 O -0.976 6.976 16 N -0.844 5.844 17 C -0.006 4.006 18 C -0.165 4.165 19 C -0.103 4.103 20 H 0.089 0.911 21 C -0.204 4.204 22 C -0.110 4.110 23 H 0.092 0.908 24 C -0.150 4.150 25 C -0.158 4.158 26 C -0.152 4.152 27 C -0.201 4.201 28 C 0.057 3.943 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.083 0.917 51 H 0.100 0.900 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.451 -1.145 16.470 20.092 hybrid contribution 0.443 -0.073 -0.860 0.970 sum -11.008 -1.218 15.610 19.140 Atomic orbital electron populations 1.22423 0.97363 1.01509 1.02490 1.21166 0.93053 0.83478 1.03353 1.57772 1.80918 1.21246 1.23248 1.18979 0.97222 0.91004 0.79011 1.21459 1.02105 1.27614 1.05542 0.92322 1.24917 0.97310 0.94842 0.96868 1.69910 1.36114 1.30272 1.17238 0.86599 0.84300 0.78416 0.78394 1.20193 1.21174 1.20009 1.02154 0.73206 0.73165 0.72789 1.93591 1.59386 1.57923 1.84202 1.93557 1.84140 1.57733 1.62150 1.58422 1.41171 1.19446 1.65356 1.21383 1.02631 0.79955 0.96630 1.21936 0.99007 0.98826 0.96699 1.21073 0.98436 0.94351 0.96462 0.91124 1.21871 1.01485 0.99759 0.97301 1.21490 0.99328 0.94163 0.96024 0.90829 1.21594 0.98165 0.95597 0.99649 1.21570 1.01066 0.95574 0.97634 1.21515 0.98834 0.98890 0.96007 1.22845 1.00594 0.93722 1.02927 1.20863 0.92011 0.91050 0.90400 0.91456 0.91980 0.92286 0.92516 0.89820 0.90511 0.94819 0.94734 0.92688 0.91704 0.88643 0.90921 0.91602 0.92870 0.92507 0.92799 0.91599 0.91959 0.92275 0.91942 0.92355 0.91664 0.90028 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 9.62 37.16 0.36 -2.18 16 2 C 0.12 2.02 5.69 -4.04 -0.02 1.99 16 3 N -0.99 -20.58 2.82 -115.66 -0.33 -20.91 16 4 C 0.26 6.51 5.10 -5.19 -0.03 6.49 16 5 C -0.53 -14.88 9.38 -34.44 -0.32 -15.20 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 S 2.78 55.86 5.75 -107.50 -0.62 55.24 16 14 O -0.97 -23.55 15.64 -57.17 -0.89 -24.45 16 15 O -0.99 -19.82 11.79 -57.17 -0.67 -20.49 16 16 N -1.01 -15.84 3.35 -106.66 -0.36 -16.19 16 17 C 0.12 1.73 6.49 -3.66 -0.02 1.71 16 18 C -0.13 -1.46 5.35 -26.59 -0.14 -1.61 16 19 C -0.08 -0.86 2.29 -90.64 -0.21 -1.07 16 20 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 21 C -0.15 -1.24 8.81 37.16 0.33 -0.92 16 22 C -0.09 -1.00 1.55 -90.71 -0.14 -1.14 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 24 C -0.11 -1.01 4.92 -26.76 -0.13 -1.14 16 25 C -0.12 -1.11 5.91 -26.70 -0.16 -1.27 16 26 C -0.11 -1.19 5.91 -26.70 -0.16 -1.35 16 27 C -0.16 -2.19 3.08 -26.76 -0.08 -2.28 16 28 C 0.16 2.13 1.95 -67.82 -0.13 2.00 16 29 H 0.07 0.83 7.54 -51.93 -0.39 0.44 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.75 4.74 -51.93 -0.25 0.50 16 33 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 34 H 0.08 1.26 5.92 -51.93 -0.31 0.95 16 35 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 36 H 0.03 0.92 7.61 -51.93 -0.40 0.53 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.10 1.58 6.86 -51.93 -0.36 1.23 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.43 6.49 -51.93 -0.34 0.09 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.53 6.48 -51.93 -0.34 0.19 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.08 1.17 2.70 -51.93 -0.14 1.03 16 52 H 0.11 1.78 5.96 -51.93 -0.31 1.47 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -31.76 385.63 -11.43 -43.19 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -9.13 Total: 0.56 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -0.96 Total: -14.28 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.05 Total: -62.52 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -1.57 Total: -44.94 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 55.86 SS G_CDS: -0.62 Total: 55.24 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.76 -11.43 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548758747.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.166 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds