Wall clock time and date at job start Wed Apr 1 2020 04:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47304 * 2 1 4 4 C 1.46498 * 120.00110 * 275.00485 * 3 2 1 5 5 C 1.50702 * 109.46805 * 274.99791 * 4 3 2 6 6 H 1.07998 * 120.00486 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99986 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99914 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00185 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47313 * 59.99467 * 9 7 5 11 11 H 1.48497 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46925 * 299.99768 * 9 7 5 13 13 S 1.65596 * 120.00190 * 94.99770 * 3 2 1 14 14 O 1.42093 * 106.40500 * 156.46191 * 13 3 2 15 15 O 1.42103 * 106.40213 * 23.54331 * 13 3 2 16 16 N 1.65602 * 107.22097 * 270.00754 * 13 3 2 17 17 C 1.47097 * 120.94508 * 266.35507 * 16 13 3 18 18 C 1.53113 * 109.12501 * 233.40148 * 17 16 13 19 19 C 1.53168 * 109.66257 * 306.10525 * 18 17 16 20 20 H 1.08998 * 109.52187 * 300.73678 * 19 18 17 21 21 C 1.53005 * 109.51495 * 180.62628 * 19 18 17 22 22 C 1.52782 * 109.18912 * 60.71566 * 19 18 17 23 23 H 1.08994 * 109.38727 * 57.70457 * 22 19 18 24 24 C 1.52802 * 110.70118 * 178.01593 * 22 19 18 25 25 C 1.53139 * 109.02780 * 181.02318 * 24 22 19 26 26 C 1.52917 * 109.86801 * 300.43937 * 25 24 22 27 27 C 1.53149 * 109.84878 * 59.06297 * 26 25 24 28 28 C 1.46675 * 120.91271 * 86.30280 * 16 13 3 29 29 H 1.08995 * 109.59538 * 244.98120 * 28 16 13 30 30 H 1.08997 * 109.47001 * 60.00229 * 1 2 3 31 31 H 1.09001 * 109.46944 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46856 * 299.99722 * 1 2 3 33 33 H 1.08998 * 109.46856 * 240.00278 * 2 1 3 34 34 H 1.08999 * 109.47425 * 120.00408 * 2 1 3 35 35 H 1.09006 * 109.47345 * 34.99238 * 4 3 2 36 36 H 1.08993 * 109.47640 * 154.99526 * 4 3 2 37 37 H 0.96998 * 120.00143 * 180.02562 * 8 7 5 38 38 H 1.09000 * 109.56520 * 113.48281 * 17 16 13 39 39 H 1.09006 * 109.48710 * 353.27224 * 17 16 13 40 40 H 1.08991 * 109.43138 * 186.05777 * 18 17 16 41 41 H 1.08996 * 109.42918 * 66.15153 * 18 17 16 42 42 H 1.09002 * 109.47251 * 60.00010 * 21 19 18 43 43 H 1.09001 * 109.47103 * 179.97438 * 21 19 18 44 44 H 1.08999 * 109.47335 * 299.99749 * 21 19 18 45 45 H 1.09004 * 109.53845 * 300.88297 * 24 22 19 46 46 H 1.08995 * 109.54752 * 61.15005 * 24 22 19 47 47 H 1.09002 * 109.40421 * 180.31864 * 25 24 22 48 48 H 1.09007 * 109.40630 * 60.56340 * 25 24 22 49 49 H 1.08999 * 109.40692 * 298.94637 * 26 25 24 50 50 H 1.08998 * 109.34451 * 179.14186 * 26 25 24 51 51 H 1.08998 * 109.54447 * 180.56223 * 27 26 25 52 52 H 1.08999 * 109.62300 * 60.32927 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1721 1.1111 -1.3840 7 6 3.8529 2.3614 -3.0844 8 7 3.0280 3.1864 -3.6915 9 14 5.5092 1.9644 -3.8513 10 1 5.5985 0.5045 -4.1086 11 1 5.6511 2.7019 -5.1324 12 1 6.5948 2.3706 -2.9229 13 16 2.4122 2.1202 1.4286 14 8 3.3284 3.1570 1.1049 15 8 2.7096 1.0799 2.3499 16 7 1.0431 2.8641 1.9895 17 6 0.7699 4.2766 1.6825 18 6 0.5087 5.0322 2.9883 19 6 -0.5994 4.3290 3.7780 20 1 -1.5093 4.2966 3.1787 21 6 -0.8685 5.0956 5.0745 22 6 -0.1540 2.9057 4.1096 23 1 0.7783 2.9404 4.6731 24 6 -1.2159 2.1873 4.9410 25 6 -0.7204 0.7767 5.2726 26 6 -0.4592 0.0007 3.9811 27 6 0.5869 0.7339 3.1364 28 6 0.0684 2.1324 2.8054 29 1 -0.8745 2.0525 2.2645 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.3617 1.8097 -1.9453 36 1 2.0921 3.1802 -1.0756 37 1 3.2798 3.5890 -4.5373 38 1 -0.1069 4.3472 1.0390 39 1 1.6313 4.7117 1.1757 40 1 0.2006 6.0527 2.7613 41 1 1.4213 5.0530 3.5840 42 1 -1.1812 6.1125 4.8372 43 1 -1.6575 4.5948 5.6356 44 1 0.0412 5.1259 5.6742 45 1 -1.3904 2.7390 5.8647 46 1 -2.1433 2.1238 4.3719 47 1 -1.4761 0.2565 5.8611 48 1 0.2029 0.8431 5.8482 49 1 -1.3871 -0.0838 3.4154 50 1 -0.0927 -0.9960 4.2266 51 1 0.7619 0.1819 2.2129 52 1 1.5189 0.8133 3.6959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548758747.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:59 Heat of formation + Delta-G solvation = -105.691893 kcal Electronic energy + Delta-G solvation = -31924.905474 eV Core-core repulsion = 28049.656891 eV Total energy + Delta-G solvation = -3875.248584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.04269 -38.59551 -37.71966 -36.85719 -36.63674 -35.33924 -34.72296 -31.70812 -31.23841 -30.45039 -28.62836 -28.41839 -24.97193 -24.50620 -23.77152 -23.38682 -22.94966 -20.99059 -20.72704 -19.73918 -18.85021 -18.39457 -17.86863 -17.48899 -16.71940 -16.32826 -16.06383 -15.73444 -15.49909 -15.19776 -14.94607 -14.88319 -14.69499 -14.30940 -14.21228 -14.00194 -13.78349 -13.58498 -13.46386 -13.39213 -13.26404 -13.04134 -12.99501 -12.79997 -12.73372 -12.65656 -12.62940 -12.23106 -12.17769 -12.06747 -11.99060 -11.89431 -11.78965 -11.68443 -11.62152 -11.36782 -11.09075 -10.79580 -10.70193 -10.60958 -9.93289 -9.72744 -8.21710 -6.33679 -0.32065 1.36632 1.40251 1.47446 2.02542 2.38068 2.58024 3.08708 3.38963 3.51920 3.70937 3.82299 3.96018 4.00444 4.06037 4.23454 4.28952 4.30778 4.42311 4.44992 4.47531 4.53279 4.58552 4.65362 4.66464 4.70904 4.85126 4.87467 4.92183 4.92792 4.97724 5.02740 5.05197 5.11509 5.14608 5.18168 5.20708 5.27354 5.32283 5.33629 5.37193 5.38970 5.47609 5.50932 5.59305 5.61133 5.69240 5.70943 5.80847 6.01948 6.10646 6.73870 7.34854 8.85567 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.004092 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.373201 B = 6841.746413 C = 7628.842518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.997 5.997 4 C 0.278 3.722 5 C -0.551 4.551 6 H 0.048 0.952 7 C 0.014 3.986 8 N -0.922 5.922 9 Si 0.954 3.046 10 H -0.263 1.263 11 H -0.274 1.274 12 H -0.279 1.279 13 S 2.782 3.218 14 O -1.018 7.018 15 O -0.995 6.995 16 N -0.998 5.998 17 C 0.113 3.887 18 C -0.122 4.122 19 C -0.081 4.081 20 H 0.082 0.918 21 C -0.142 4.142 22 C -0.088 4.088 23 H 0.055 0.945 24 C -0.106 4.106 25 C -0.121 4.121 26 C -0.110 4.110 27 C -0.165 4.165 28 C 0.157 3.843 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.026 0.974 36 H 0.011 0.989 37 H 0.268 0.732 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.052 0.948 49 H 0.075 0.925 50 H 0.068 0.932 51 H 0.070 0.930 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.673 -1.880 17.662 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.837 5.837 4 C 0.155 3.845 5 C -0.590 4.590 6 H 0.067 0.933 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.779 3.221 10 H -0.188 1.188 11 H -0.199 1.199 12 H -0.204 1.204 13 S 2.794 3.206 14 O -1.002 7.002 15 O -0.979 6.979 16 N -0.839 5.839 17 C -0.012 4.012 18 C -0.161 4.161 19 C -0.099 4.099 20 H 0.101 0.899 21 C -0.200 4.200 22 C -0.108 4.108 23 H 0.073 0.927 24 C -0.144 4.144 25 C -0.158 4.158 26 C -0.148 4.148 27 C -0.204 4.204 28 C 0.052 3.948 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.044 0.956 36 H 0.029 0.971 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.070 0.930 49 H 0.093 0.907 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.800 -1.778 17.869 22.647 hybrid contribution 1.158 0.100 -1.230 1.692 sum -12.642 -1.678 16.639 20.964 Atomic orbital electron populations 1.22330 0.94485 1.03499 1.02397 1.21396 0.95500 0.81621 1.03191 1.57688 1.81562 1.22549 1.21928 1.18483 0.95643 0.90019 0.80389 1.21794 1.03344 1.27715 1.06132 0.93342 1.25722 1.00822 0.94663 0.97347 1.69998 1.37713 1.30854 1.17635 0.85677 0.79732 0.79012 0.77728 1.18787 1.19861 1.20441 1.01744 0.73675 0.72559 0.72600 1.93517 1.62138 1.59600 1.84960 1.93579 1.84829 1.57812 1.61686 1.58103 1.40644 1.19965 1.65207 1.21539 1.01859 0.79290 0.98529 1.21945 0.99400 0.99707 0.95063 1.21071 0.97888 0.93640 0.97326 0.89927 1.21833 1.01761 1.00163 0.96196 1.21499 0.99593 0.94890 0.94839 0.92652 1.21587 0.97583 0.95183 1.00035 1.21582 1.01347 0.95853 0.97017 1.21506 0.98319 0.98732 0.96275 1.22777 1.00664 0.94336 1.02617 1.21189 0.91478 0.90945 0.91211 0.89755 0.93175 0.89221 0.91395 0.91018 0.89610 0.95589 0.97145 0.92339 0.90175 0.91714 0.88893 0.92914 0.91984 0.90918 0.93394 0.89969 0.90557 0.90091 0.92957 0.90674 0.91336 0.91153 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.57 9.62 71.98 0.69 -3.88 16 2 C 0.11 3.81 5.69 86.38 0.49 4.30 16 3 N -1.00 -42.97 2.82 -519.85 -1.47 -44.44 16 4 C 0.28 14.59 5.10 85.63 0.44 15.02 16 5 C -0.55 -32.14 9.38 25.60 0.24 -31.90 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 7 C 0.01 0.82 5.46 84.66 0.46 1.28 16 8 N -0.92 -54.89 13.29 21.45 0.28 -54.60 16 9 Si 0.95 45.52 29.54 68.60 2.03 47.55 16 10 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 13 S 2.78 116.93 5.75 -56.49 -0.32 116.61 16 14 O -1.02 -52.75 15.64 -128.00 -2.00 -54.76 16 15 O -1.00 -41.13 11.79 -128.00 -1.51 -42.64 16 16 N -1.00 -31.89 3.35 -491.36 -1.64 -33.53 16 17 C 0.11 3.33 6.49 86.30 0.56 3.89 16 18 C -0.12 -2.75 5.35 30.69 0.16 -2.59 16 19 C -0.08 -1.44 2.29 -10.81 -0.02 -1.46 16 20 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 21 C -0.14 -1.97 8.81 71.98 0.63 -1.34 16 22 C -0.09 -1.77 1.55 -10.85 -0.02 -1.79 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 24 C -0.11 -1.52 4.92 30.57 0.15 -1.37 16 25 C -0.12 -1.85 5.91 30.61 0.18 -1.67 16 26 C -0.11 -2.01 5.91 30.62 0.18 -1.83 16 27 C -0.17 -4.29 3.08 30.57 0.09 -4.20 16 28 C 0.16 3.88 1.95 44.97 0.09 3.97 16 29 H 0.08 1.84 7.54 -2.39 -0.02 1.82 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 1.67 4.74 -2.39 -0.01 1.66 16 33 H 0.07 2.65 8.11 -2.39 -0.02 2.63 16 34 H 0.09 2.84 5.92 -2.39 -0.01 2.82 16 35 H 0.03 1.38 8.11 -2.38 -0.02 1.36 16 36 H 0.01 0.60 7.61 -2.39 -0.02 0.58 16 37 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 2.31 6.86 -2.38 -0.02 2.29 16 40 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 0.80 6.49 -2.39 -0.02 0.78 16 44 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.08 0.96 6.48 -2.39 -0.02 0.95 16 46 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 49 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.07 1.96 2.70 -2.39 -0.01 1.95 16 52 H 0.09 2.73 5.96 -2.42 -0.01 2.72 16 Total: -1.00 -71.49 385.63 0.58 -70.90 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.89 Total: 18.47 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: 4.33 Total: -23.57 kcal Atomic # 7 Polarization: -129.75 SS G_CDS: -2.83 Total: -132.57 kcal Atomic # 8 Polarization: -93.88 SS G_CDS: -3.51 Total: -97.39 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: 116.93 SS G_CDS: -0.32 Total: 116.61 kcal Total: -71.49 0.58 -70.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548758747.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.787 kcal (2) G-P(sol) polarization free energy of solvation -71.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds