Wall clock time and date at job start Wed Apr 1 2020 03:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47195 * 2 1 4 4 C 1.50705 * 109.47105 * 240.00161 * 2 1 3 5 5 O 1.21282 * 119.99901 * 260.24704 * 4 2 1 6 6 N 1.34774 * 119.99844 * 80.24146 * 4 2 1 7 7 C 1.46930 * 120.55765 * 354.69305 * 6 4 2 8 8 C 1.53427 * 107.78431 * 224.63980 * 7 6 4 9 9 C 1.52846 * 108.87042 * 296.78646 * 8 7 6 10 10 C 1.50592 * 110.50815 * 51.38956 * 9 8 7 11 11 C 1.38509 * 118.93103 * 159.51313 * 10 9 8 12 12 C 1.38113 * 120.30085 * 179.57522 * 11 10 9 13 13 C 1.38305 * 120.15849 * 0.03587 * 12 11 10 14 14 C 1.38033 * 119.90152 * 0.35478 * 13 12 11 15 15 C 1.38568 * 121.49879 * 339.27763 * 10 9 8 16 16 N 1.46903 * 109.47090 * 120.00506 * 2 1 3 17 17 C 1.47433 * 110.99982 * 179.87547 * 16 2 1 18 18 C 1.54317 * 107.23577 * 123.25576 * 17 16 2 19 19 C 1.55137 * 103.02200 * 22.28304 * 18 17 16 20 20 O 1.42895 * 110.99029 * 82.47298 * 19 18 17 21 21 C 1.50689 * 110.99352 * 206.25924 * 19 18 17 22 22 H 1.08000 * 120.00563 * 118.54290 * 21 19 18 23 23 C 1.37879 * 120.00151 * 298.54258 * 21 19 18 24 24 N 1.31516 * 119.99455 * 0.02562 * 23 21 19 25 25 Si 1.86797 * 120.00356 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46960 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47284 * 120.00015 * 25 23 21 28 28 H 1.48500 * 109.46968 * 239.99917 * 25 23 21 29 29 C 1.47849 * 110.99650 * 300.71336 * 16 2 1 30 30 H 1.08998 * 109.47103 * 68.44573 * 1 2 3 31 31 H 1.09000 * 109.46544 * 188.44517 * 1 2 3 32 32 H 1.08992 * 109.46920 * 308.44491 * 1 2 3 33 33 H 1.09002 * 109.79631 * 344.21355 * 7 6 4 34 34 H 1.09005 * 109.79817 * 105.06633 * 7 6 4 35 35 H 1.08999 * 109.57584 * 56.60052 * 8 7 6 36 36 H 1.09007 * 109.57202 * 176.84459 * 8 7 6 37 37 H 1.09001 * 109.26893 * 291.12650 * 9 8 7 38 38 H 1.09000 * 109.26669 * 171.66158 * 9 8 7 39 39 H 1.07997 * 119.84851 * 359.60111 * 11 10 9 40 40 H 1.08002 * 119.92202 * 180.02562 * 12 11 10 41 41 H 1.07999 * 120.04868 * 180.02562 * 13 12 11 42 42 H 1.08005 * 119.98339 * 179.70835 * 14 13 12 43 43 H 1.09001 * 109.88780 * 242.66109 * 17 16 2 44 44 H 1.09000 * 109.89056 * 3.84440 * 17 16 2 45 45 H 1.09004 * 110.70681 * 140.66733 * 18 17 16 46 46 H 1.09001 * 110.70395 * 263.89944 * 18 17 16 47 47 H 0.96698 * 114.00120 * 61.45760 * 20 19 18 48 48 H 0.97009 * 119.99594 * 180.02562 * 24 23 21 49 49 H 1.09001 * 110.37672 * 332.46992 * 29 16 2 50 50 H 1.09000 * 110.37236 * 94.80911 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.4023 -1.8631 -1.1567 6 7 2.0705 -0.0648 -2.4130 7 6 1.5186 1.2908 -2.5420 8 6 0.6925 1.3393 -3.8340 9 6 1.6205 1.0948 -5.0236 10 6 2.4387 -0.1508 -4.8072 11 6 3.0061 -0.7787 -5.9037 12 6 3.7691 -1.9177 -5.7368 13 6 3.9711 -2.4397 -4.4721 14 6 3.4025 -1.8245 -3.3750 15 6 2.6379 -0.6750 -3.5401 16 7 2.0198 -0.6926 1.1994 17 6 3.4936 -0.7149 1.2320 18 6 3.9316 -0.0575 2.5576 19 6 2.6767 -0.2132 3.4564 20 8 2.6311 -1.5116 4.0514 21 6 2.6309 0.8625 4.5106 22 1 1.8068 1.5601 4.5350 23 6 3.6412 0.9563 5.4443 24 7 4.6450 0.1072 5.4144 25 14 3.5841 2.2894 6.7516 26 1 2.3600 3.1099 6.5686 27 1 3.5636 1.6623 8.0975 28 1 4.7835 3.1560 6.6275 29 6 1.5317 -0.0322 2.4289 30 1 -0.3633 0.3775 -0.9558 31 1 -0.3632 -1.0166 0.1509 32 1 -0.3633 0.6389 0.8048 33 1 0.8800 1.5123 -1.6869 34 1 2.3302 2.0164 -2.5953 35 1 -0.0758 0.5666 -3.8055 36 1 0.2224 2.3181 -3.9303 37 1 2.2884 1.9482 -5.1401 38 1 1.0231 0.9803 -5.9282 39 1 2.8514 -0.3755 -6.8936 40 1 4.2090 -2.4022 -6.5961 41 1 4.5684 -3.3302 -4.3436 42 1 3.5554 -2.2337 -2.3872 43 1 3.8498 -1.7443 1.1931 44 1 3.8917 -0.1504 0.3888 45 1 4.7819 -0.5868 2.9878 46 1 4.1686 0.9955 2.4057 47 1 3.3819 -1.7062 4.6289 48 1 5.3556 0.1729 6.0715 49 1 1.3509 1.0268 2.2447 50 1 0.6225 -0.5170 2.7846 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148270.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:23 Heat of formation + Delta-G solvation = -53.744905 kcal Electronic energy + Delta-G solvation = -31463.122440 eV Core-core repulsion = 27454.682495 eV Total energy + Delta-G solvation = -4008.439945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.34294 -40.49773 -39.28696 -37.55022 -36.71402 -34.55332 -34.18277 -33.59660 -31.39059 -30.92349 -30.11629 -29.31910 -27.17635 -26.62007 -25.03873 -24.05258 -23.66309 -22.33275 -21.37727 -21.08566 -19.96166 -18.97904 -18.47874 -18.01207 -17.18099 -17.04199 -16.87275 -16.55219 -16.20411 -15.95054 -15.80649 -15.56868 -15.11674 -14.72102 -14.54825 -14.36786 -14.24639 -14.10646 -14.00389 -13.74933 -13.53520 -13.45305 -13.16980 -13.11212 -12.96178 -12.76390 -12.73608 -12.53285 -12.41145 -12.21318 -12.19299 -12.16100 -12.00446 -11.77285 -11.64387 -11.13228 -11.10236 -10.61653 -10.39210 -10.09232 -9.63810 -9.21700 -8.85742 -8.20913 -6.37407 0.30646 0.45533 1.40269 1.43761 1.50704 1.54204 1.65192 2.38542 2.86461 2.94907 3.05625 3.25928 3.72155 3.81423 3.89531 3.91292 3.96496 4.01358 4.04834 4.05529 4.24006 4.29371 4.33253 4.35009 4.39939 4.50933 4.53532 4.61972 4.67762 4.72460 4.76188 4.81230 4.87356 4.99580 5.02789 5.04401 5.15605 5.19972 5.23341 5.28630 5.30436 5.43227 5.50352 5.51415 5.62010 5.65943 5.77355 5.88901 6.05144 6.16695 6.19068 6.30569 6.69436 7.00850 7.34209 7.43868 8.84730 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019452 B = 0.002769 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.117264 B =10108.133655 C =10629.743560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.062 3.938 3 H 0.078 0.922 4 C 0.516 3.484 5 O -0.533 6.533 6 N -0.554 5.554 7 C 0.082 3.918 8 C -0.129 4.129 9 C -0.076 4.076 10 C -0.122 4.122 11 C -0.101 4.101 12 C -0.143 4.143 13 C -0.117 4.117 14 C -0.185 4.185 15 C 0.135 3.865 16 N -0.518 5.518 17 C 0.067 3.933 18 C -0.133 4.133 19 C 0.234 3.766 20 O -0.589 6.589 21 C -0.556 4.556 22 H 0.062 0.938 23 C 0.027 3.973 24 N -0.913 5.913 25 Si 0.963 3.037 26 H -0.265 1.265 27 H -0.282 1.282 28 H -0.280 1.280 29 C 0.074 3.926 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.156 0.844 40 H 0.146 0.854 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.048 0.952 44 H 0.038 0.962 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.371 0.629 48 H 0.267 0.733 49 H 0.066 0.934 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.511 6.307 -23.911 25.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.050 4.050 3 H 0.095 0.905 4 C 0.305 3.695 5 O -0.409 6.409 6 N -0.278 5.278 7 C -0.038 4.038 8 C -0.166 4.166 9 C -0.113 4.113 10 C -0.124 4.124 11 C -0.119 4.119 12 C -0.162 4.162 13 C -0.136 4.136 14 C -0.205 4.205 15 C 0.041 3.959 16 N -0.243 5.243 17 C -0.060 4.060 18 C -0.173 4.173 19 C 0.194 3.806 20 O -0.397 6.397 21 C -0.594 4.594 22 H 0.080 0.920 23 C -0.173 4.173 24 N -0.553 5.553 25 Si 0.788 3.212 26 H -0.190 1.190 27 H -0.208 1.208 28 H -0.206 1.206 29 C -0.052 4.052 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.138 0.862 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.174 0.826 40 H 0.164 0.836 41 H 0.147 0.853 42 H 0.152 0.848 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.219 0.781 48 H 0.077 0.923 49 H 0.084 0.916 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.963 5.151 -24.085 25.595 hybrid contribution 1.552 0.796 1.600 2.367 sum -5.411 5.947 -22.485 23.879 Atomic orbital electron populations 1.21870 0.89746 1.03586 1.04274 1.21928 0.99127 0.95849 0.88062 0.90460 1.21042 0.77424 0.86431 0.84572 1.90510 1.46721 1.18575 1.85072 1.45862 1.56651 1.17856 1.07447 1.22516 0.99134 0.80514 1.01681 1.21891 0.97512 1.04809 0.92411 1.20507 0.97274 0.93758 0.99717 1.19901 1.01996 1.00257 0.90279 1.21280 0.96634 0.95207 0.98793 1.21393 1.00331 0.97305 0.97173 1.21287 0.99357 1.00162 0.92770 1.22154 0.99286 0.97301 1.01781 1.17984 0.96092 0.94751 0.87064 1.63403 1.08332 1.51477 1.01094 1.22518 0.87764 0.99188 0.96561 1.23087 1.00651 0.98665 0.94853 1.19827 0.90078 0.81250 0.89480 1.86150 1.50640 1.36438 1.66426 1.21816 1.07939 1.15070 1.14565 0.91962 1.25755 0.94422 0.97939 0.99221 1.69866 1.11134 1.37758 1.36502 0.85442 0.78155 0.78982 0.78613 1.18959 1.20828 1.20573 1.22877 0.98118 0.96548 0.87704 0.88892 0.92496 0.89707 0.87245 0.89532 0.91698 0.86197 0.88983 0.88117 0.82599 0.83585 0.85334 0.84837 0.93331 0.94330 0.92778 0.93121 0.78094 0.92347 0.91628 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.47 71.98 0.61 -2.71 16 2 C 0.06 1.92 1.21 44.17 0.05 1.97 16 3 H 0.08 2.12 7.19 -2.39 -0.02 2.11 16 4 C 0.52 17.00 5.76 87.66 0.51 17.50 16 5 O -0.53 -22.00 12.49 -3.04 -0.04 -22.04 16 6 N -0.55 -14.47 2.97 -629.34 -1.87 -16.34 16 7 C 0.08 1.33 5.72 86.44 0.49 1.82 16 8 C -0.13 -1.41 6.11 30.69 0.19 -1.22 16 9 C -0.08 -0.88 5.78 29.76 0.17 -0.71 16 10 C -0.12 -2.42 5.76 -19.75 -0.11 -2.54 16 11 C -0.10 -1.73 9.66 22.30 0.22 -1.52 16 12 C -0.14 -2.77 10.04 22.26 0.22 -2.54 16 13 C -0.12 -2.97 10.05 22.24 0.22 -2.74 16 14 C -0.19 -5.84 8.88 22.41 0.20 -5.64 16 15 C 0.14 3.70 6.31 38.08 0.24 3.94 16 16 N -0.52 -20.92 4.74 -864.73 -4.10 -25.02 16 17 C 0.07 2.94 5.70 86.65 0.49 3.44 16 18 C -0.13 -6.44 5.37 31.77 0.17 -6.27 16 19 C 0.23 11.79 0.87 -10.16 -0.01 11.78 16 20 O -0.59 -32.37 13.16 -148.98 -1.96 -34.33 16 21 C -0.56 -29.41 8.27 25.60 0.21 -29.20 16 22 H 0.06 3.21 7.79 -2.91 -0.02 3.18 16 23 C 0.03 1.43 5.29 84.65 0.45 1.88 16 24 N -0.91 -49.56 10.75 21.45 0.23 -49.33 16 25 Si 0.96 41.70 29.54 68.60 2.03 43.72 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 28 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 29 C 0.07 3.15 4.72 86.77 0.41 3.56 16 30 H 0.09 1.61 6.45 -2.39 -0.02 1.59 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.87 7.35 -2.39 -0.02 1.85 16 33 H 0.11 1.50 4.64 -2.39 -0.01 1.48 16 34 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.10 0.78 8.12 -2.39 -0.02 0.76 16 39 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 41 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 42 H 0.13 5.13 4.94 -24.35 -0.12 5.01 16 43 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.04 1.56 7.04 -2.39 -0.02 1.54 16 45 H 0.05 2.84 7.54 -2.38 -0.02 2.82 16 46 H 0.05 2.43 8.03 -2.39 -0.02 2.41 16 47 H 0.37 20.73 7.56 -74.06 -0.56 20.17 16 48 H 0.27 13.82 8.31 -92.70 -0.77 13.05 16 49 H 0.07 2.51 7.46 -2.39 -0.02 2.49 16 50 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -69.83 382.52 -0.69 -70.51 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: 0.29 Total: 42.02 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 4.74 Total: -9.20 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -5.74 Total: -90.69 kcal Atomic # 8 Polarization: -54.38 SS G_CDS: -2.00 Total: -56.38 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -69.83 -0.69 -70.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148270.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.769 kcal (2) G-P(sol) polarization free energy of solvation -69.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds