Wall clock time and date at job start Wed Apr 1 2020 03:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46910 * 2 1 4 4 C 1.50695 * 109.47541 * 119.99769 * 2 1 3 5 5 O 1.21290 * 119.99869 * 92.13007 * 4 2 1 6 6 N 1.34775 * 120.00425 * 272.13460 * 4 2 1 7 7 C 1.47027 * 125.64326 * 4.51666 * 6 4 2 8 8 C 1.54323 * 107.26609 * 181.09798 * 7 6 4 9 9 C 1.55163 * 102.94486 * 22.19528 * 8 7 6 10 10 O 1.42891 * 111.00045 * 82.57206 * 9 8 7 11 11 C 1.50698 * 111.03491 * 206.41019 * 9 8 7 12 12 H 1.08004 * 120.00333 * 22.00925 * 11 9 8 13 13 C 1.37882 * 119.99507 * 202.01444 * 11 9 8 14 14 N 1.31513 * 119.99594 * 173.53337 * 13 11 9 15 15 Si 1.86800 * 120.00089 * 353.53634 * 13 11 9 16 16 H 1.48489 * 109.47233 * 84.84382 * 15 13 11 17 17 H 1.48505 * 109.46749 * 204.84586 * 15 13 11 18 18 H 1.48498 * 109.46945 * 324.84273 * 15 13 11 19 19 C 1.47421 * 125.65037 * 184.56289 * 6 4 2 20 20 N 1.46904 * 109.47092 * 240.00124 * 2 1 3 21 21 C 1.47170 * 110.99859 * 54.70539 * 20 2 1 22 22 C 1.52884 * 108.52171 * 52.15992 * 21 20 2 23 23 C 1.50712 * 109.96960 * 50.34297 * 22 21 20 24 24 C 1.38684 * 118.48925 * 163.15125 * 23 22 21 25 25 C 1.38034 * 120.34818 * 179.80121 * 24 23 22 26 26 C 1.38264 * 119.82631 * 359.97438 * 25 24 23 27 27 C 1.38006 * 119.87398 * 0.08460 * 26 25 24 28 28 C 1.37832 * 121.66496 * 343.10398 * 23 22 21 29 29 C 1.46636 * 110.99864 * 177.68244 * 20 2 1 30 30 H 1.08999 * 109.47541 * 302.76377 * 1 2 3 31 31 H 1.09000 * 109.47818 * 62.76720 * 1 2 3 32 32 H 1.09008 * 109.47110 * 182.76775 * 1 2 3 33 33 H 1.08996 * 109.88356 * 300.51671 * 7 6 4 34 34 H 1.09003 * 109.87757 * 61.68641 * 7 6 4 35 35 H 1.09007 * 110.72133 * 263.82968 * 8 7 6 36 36 H 1.09005 * 110.72208 * 140.56132 * 8 7 6 37 37 H 0.96703 * 114.00514 * 62.52881 * 10 9 8 38 38 H 0.97006 * 119.99921 * 179.97438 * 14 13 11 39 39 H 1.09005 * 110.36634 * 37.00037 * 19 6 4 40 40 H 1.08994 * 110.46348 * 274.72286 * 19 6 4 41 41 H 1.08999 * 109.62561 * 171.86981 * 21 20 2 42 42 H 1.09005 * 109.62453 * 292.25456 * 21 20 2 43 43 H 1.08996 * 109.39008 * 170.50042 * 22 21 20 44 44 H 1.09000 * 109.38780 * 290.19016 * 22 21 20 45 45 H 1.07993 * 119.82971 * 359.78490 * 24 23 22 46 46 H 1.07998 * 120.08569 * 179.97438 * 25 24 23 47 47 H 1.08008 * 120.06203 * 180.02562 * 26 25 24 48 48 H 1.07999 * 119.82051 * 180.02562 * 27 26 25 49 49 H 1.08992 * 109.30512 * 49.48325 * 29 20 2 50 50 H 1.08999 * 109.30478 * 168.87229 * 29 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.2714 -1.8987 1.1895 6 7 2.2161 -0.0251 2.3764 7 6 1.8794 1.3897 2.5921 8 6 2.2894 1.7430 4.0373 9 6 3.3522 0.6628 4.3709 10 8 4.6348 1.0312 3.8600 11 6 3.4177 0.4086 5.8549 12 1 2.5755 0.6582 6.4833 13 6 4.5529 -0.1426 6.4104 14 7 4.6614 -0.2472 7.7168 15 14 5.9367 -0.7407 5.3073 16 1 6.8254 0.3989 4.9660 17 1 6.7198 -1.7839 6.0172 18 1 5.3649 -1.3128 4.0620 19 6 2.7887 -0.5699 3.6208 20 7 2.0196 -0.6925 -1.1995 21 6 1.4470 -0.1022 -2.4199 22 6 1.6886 1.4071 -2.3890 23 6 3.1397 1.6902 -2.0965 24 6 3.6353 2.9559 -2.3714 25 6 4.9574 3.2582 -2.1147 26 6 5.7920 2.2941 -1.5801 27 6 5.3002 1.0338 -1.3073 28 6 3.9722 0.7276 -1.5671 29 6 3.4844 -0.6643 -1.2613 30 1 -0.3634 0.5561 0.8641 31 1 -0.3635 0.4702 -0.9137 32 1 -0.3634 -1.0265 0.0496 33 1 2.4298 2.0133 1.8876 34 1 0.8073 1.5393 2.4638 35 1 1.4356 1.6649 4.7105 36 1 2.7265 2.7406 4.0813 37 1 4.9917 1.8445 4.2424 38 1 5.4599 -0.6354 8.1077 39 1 3.5892 -1.2741 3.3936 40 1 2.0151 -1.0551 4.2158 41 1 1.9309 -0.5326 -3.2967 42 1 0.3764 -0.3039 -2.4566 43 1 1.4239 1.8359 -3.3555 44 1 1.0687 1.8570 -1.6134 45 1 2.9835 3.7090 -2.7887 46 1 5.3390 4.2451 -2.3307 47 1 6.8271 2.5266 -1.3774 48 1 5.9528 0.2815 -0.8894 49 1 3.8918 -0.9864 -0.3031 50 1 3.8253 -1.3449 -2.0415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:36 Heat of formation + Delta-G solvation = -63.696338 kcal Electronic energy + Delta-G solvation = -32292.722218 eV Core-core repulsion = 28283.850747 eV Total energy + Delta-G solvation = -4008.871471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.02468 -40.79873 -39.33607 -38.05960 -36.38316 -34.51057 -33.73185 -33.55020 -31.89828 -30.85111 -30.23196 -30.04893 -27.27945 -25.89802 -25.23090 -24.27251 -23.14116 -22.98635 -21.63641 -21.03273 -19.60312 -19.37201 -18.52910 -17.60325 -17.37757 -17.09852 -16.79884 -16.43248 -16.35930 -16.01460 -15.80909 -15.60371 -15.28250 -15.04465 -14.82182 -14.59202 -14.38324 -14.12164 -14.00849 -13.93344 -13.58102 -13.44164 -13.42844 -13.21970 -13.14471 -12.74258 -12.59562 -12.55170 -12.49094 -12.41313 -12.35088 -12.18949 -12.05186 -11.94477 -11.60856 -11.30756 -10.82618 -10.68066 -10.36687 -9.72432 -9.61119 -9.52717 -9.33822 -8.42032 -6.53403 0.37498 0.41953 1.36926 1.43413 1.57676 1.63038 1.95035 2.34527 2.77426 2.87527 2.91489 3.34166 3.54083 3.70681 3.75693 3.79163 3.93682 4.02005 4.07189 4.07326 4.15888 4.22117 4.25570 4.28653 4.43900 4.47203 4.49613 4.59101 4.61311 4.66705 4.72163 4.79344 4.82141 4.83267 4.92001 4.95705 5.00016 5.06372 5.14771 5.15757 5.21003 5.28850 5.30165 5.46661 5.50867 5.58188 5.61625 5.91103 6.00407 6.01497 6.08133 6.54653 6.61586 6.95945 7.17597 7.26112 8.70763 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012984 B = 0.004108 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.928598 B = 6814.655056 C = 7684.763490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.079 3.921 3 H 0.075 0.925 4 C 0.520 3.480 5 O -0.580 6.580 6 N -0.615 5.615 7 C 0.108 3.892 8 C -0.137 4.137 9 C 0.216 3.784 10 O -0.567 6.567 11 C -0.544 4.544 12 H 0.058 0.942 13 C 0.037 3.963 14 N -0.928 5.928 15 Si 0.990 3.010 16 H -0.272 1.272 17 H -0.334 1.334 18 H -0.285 1.285 19 C 0.118 3.882 20 N -0.521 5.521 21 C 0.050 3.950 22 C -0.116 4.116 23 C -0.086 4.086 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.130 4.130 27 C -0.133 4.133 28 C -0.126 4.126 29 C 0.095 3.905 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.385 0.615 38 H 0.268 0.732 39 H 0.038 0.962 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.149 0.851 46 H 0.146 0.854 47 H 0.132 0.868 48 H 0.107 0.893 49 H 0.048 0.952 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.131 11.329 -24.388 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 H 0.093 0.907 4 C 0.309 3.691 5 O -0.460 6.460 6 N -0.348 5.348 7 C -0.014 4.014 8 C -0.175 4.175 9 C 0.175 3.825 10 O -0.376 6.376 11 C -0.582 4.582 12 H 0.076 0.924 13 C -0.164 4.164 14 N -0.565 5.565 15 Si 0.825 3.175 16 H -0.198 1.198 17 H -0.266 1.266 18 H -0.212 1.212 19 C -0.006 4.006 20 N -0.243 5.243 21 C -0.076 4.076 22 C -0.154 4.154 23 C -0.086 4.086 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.148 4.148 27 C -0.152 4.152 28 C -0.128 4.128 29 C -0.034 4.034 30 H 0.095 0.905 31 H 0.123 0.877 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.234 0.766 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.109 0.891 45 H 0.167 0.833 46 H 0.164 0.836 47 H 0.150 0.850 48 H 0.125 0.875 49 H 0.067 0.933 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.211 9.576 -24.643 27.404 hybrid contribution 1.790 0.201 0.908 2.017 sum -5.422 9.777 -23.736 26.237 Atomic orbital electron populations 1.21886 0.89606 1.03391 1.04822 1.21566 0.98689 0.95826 0.87206 0.90714 1.20969 0.77162 0.86819 0.84115 1.90648 1.53261 1.17195 1.84849 1.48768 1.61474 1.13182 1.11421 1.22205 1.01272 0.80258 0.97688 1.23148 0.99720 0.99995 0.94650 1.20078 0.81196 0.91122 0.90090 1.86106 1.35703 1.46933 1.68863 1.21457 1.02039 1.43040 0.91654 0.92395 1.25669 1.00926 0.94145 0.95705 1.70040 1.29726 1.44841 1.11907 0.85054 0.78557 0.76878 0.76982 1.19831 1.26587 1.21188 1.22528 0.96264 0.97441 0.84319 1.62377 1.05749 1.54074 1.02093 1.22456 1.02092 0.92067 0.91009 1.21214 0.91332 0.98233 1.04598 1.19810 0.96512 0.93562 0.98757 1.21407 0.96041 0.96038 1.00125 1.21430 0.94039 0.99943 0.98587 1.21308 1.00855 0.93163 0.99433 1.21209 0.95430 0.97845 1.00721 1.20389 0.94617 0.97080 1.00721 1.20966 0.88230 0.92885 1.01288 0.90476 0.87739 0.92463 0.90770 0.88758 0.90021 0.88303 0.76552 0.92310 0.94354 0.91546 0.89739 0.87353 0.87278 0.89090 0.83294 0.83644 0.85026 0.87523 0.93346 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.62 71.98 0.62 -2.01 16 2 C 0.08 2.03 1.26 44.17 0.06 2.09 16 3 H 0.08 1.81 4.74 -2.39 -0.01 1.80 16 4 C 0.52 19.35 5.85 87.66 0.51 19.87 16 5 O -0.58 -26.97 16.14 -3.06 -0.05 -27.02 16 6 N -0.62 -22.88 3.33 -811.80 -2.70 -25.58 16 7 C 0.11 3.03 6.28 86.73 0.54 3.57 16 8 C -0.14 -4.44 6.14 31.78 0.20 -4.24 16 9 C 0.22 9.34 0.69 -10.15 -0.01 9.33 16 10 O -0.57 -24.08 8.90 -148.98 -1.33 -25.40 16 11 C -0.54 -28.78 8.86 25.60 0.23 -28.56 16 12 H 0.06 3.31 7.98 -2.91 -0.02 3.29 16 13 C 0.04 2.07 5.46 84.66 0.46 2.53 16 14 N -0.93 -55.97 13.96 21.45 0.30 -55.67 16 15 Si 0.99 50.26 24.78 68.60 1.70 51.96 16 16 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.33 -17.43 7.11 99.48 0.71 -16.72 16 18 H -0.28 -15.18 5.32 99.48 0.53 -14.65 16 19 C 0.12 5.35 5.79 86.86 0.50 5.85 16 20 N -0.52 -13.29 4.59 -880.30 -4.04 -17.33 16 21 C 0.05 0.81 5.40 86.21 0.47 1.28 16 22 C -0.12 -1.53 5.05 29.81 0.15 -1.38 16 23 C -0.09 -1.67 5.05 -19.85 -0.10 -1.77 16 24 C -0.12 -1.95 9.66 22.33 0.22 -1.74 16 25 C -0.12 -2.15 10.05 22.23 0.22 -1.93 16 26 C -0.13 -2.81 10.05 22.22 0.22 -2.59 16 27 C -0.13 -3.49 9.65 22.33 0.22 -3.28 16 28 C -0.13 -3.19 5.25 -19.86 -0.10 -3.29 16 29 C 0.09 2.72 5.28 85.58 0.45 3.17 16 30 H 0.08 1.29 7.44 -2.39 -0.02 1.27 16 31 H 0.10 1.23 5.60 -2.39 -0.01 1.21 16 32 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.07 1.90 7.67 -2.39 -0.02 1.88 16 34 H 0.09 2.03 7.44 -2.39 -0.02 2.01 16 35 H 0.08 2.64 7.98 -2.38 -0.02 2.62 16 36 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 37 H 0.38 13.86 8.97 -74.05 -0.66 13.19 16 38 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 39 H 0.04 2.01 6.20 -2.38 -0.01 2.00 16 40 H 0.07 3.11 8.03 -2.39 -0.02 3.09 16 41 H 0.08 1.31 8.05 -2.39 -0.02 1.29 16 42 H 0.11 1.30 6.65 -2.38 -0.02 1.29 16 43 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.09 1.06 6.10 -2.39 -0.01 1.05 16 45 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 46 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 47 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 48 H 0.11 2.94 8.06 -2.91 -0.02 2.92 16 49 H 0.05 1.79 6.36 -2.39 -0.02 1.78 16 50 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -76.24 377.94 -1.14 -77.38 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.12 Total: 24.77 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 4.86 Total: -3.10 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -6.44 Total: -98.58 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -1.38 Total: -52.42 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 1.70 Total: 51.96 kcal Total: -76.24 -1.14 -77.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.683 kcal (2) G-P(sol) polarization free energy of solvation -76.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds