Wall clock time and date at job start Wed Apr 1 2020 03:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47394 * 2 1 4 4 C 1.46767 * 124.34957 * 269.95223 * 3 2 1 5 5 C 1.54476 * 105.47124 * 197.03816 * 4 3 2 6 6 H 1.08994 * 111.00535 * 92.71863 * 5 4 3 7 7 C 1.53010 * 110.96554 * 216.46210 * 5 4 3 8 8 N 1.46500 * 109.46784 * 178.83350 * 7 5 4 9 9 C 1.34773 * 119.99679 * 180.02562 * 8 7 5 10 10 O 1.21277 * 120.00337 * 359.97438 * 9 8 7 11 11 C 1.50705 * 120.00126 * 180.02562 * 9 8 7 12 12 C 1.52996 * 109.47297 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.46916 * 305.95745 * 12 11 9 14 14 C 1.50696 * 109.47458 * 65.95663 * 12 11 9 15 15 H 1.08002 * 120.00049 * 27.28285 * 14 12 11 16 16 C 1.37880 * 120.00360 * 207.28883 * 14 12 11 17 17 N 1.31511 * 119.99595 * 353.72048 * 16 14 12 18 18 Si 1.86794 * 120.00305 * 173.72402 * 16 14 12 19 19 H 1.48502 * 109.47238 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47206 * 59.99870 * 18 16 14 21 21 H 1.48503 * 109.47112 * 299.99798 * 18 16 14 22 22 C 1.50701 * 109.46867 * 185.95762 * 12 11 9 23 23 C 1.38230 * 119.99944 * 293.61635 * 22 12 11 24 24 C 1.38237 * 119.99872 * 179.78869 * 23 22 12 25 25 C 1.38233 * 120.00118 * 0.44879 * 24 23 22 26 26 C 1.38239 * 119.99869 * 359.80645 * 25 24 23 27 27 C 1.38237 * 120.00075 * 359.97438 * 26 25 24 28 28 C 1.54630 * 101.76583 * 334.57880 * 5 4 3 29 29 C 1.34415 * 124.34989 * 89.97663 * 3 2 1 30 30 O 1.21284 * 124.94134 * 359.60381 * 29 3 2 31 31 H 1.08999 * 109.46919 * 60.00220 * 1 2 3 32 32 H 1.08997 * 109.47395 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46950 * 300.00067 * 1 2 3 34 34 H 1.09002 * 109.46950 * 239.99933 * 2 1 3 35 35 H 1.08996 * 109.46648 * 120.00496 * 2 1 3 36 36 H 1.08994 * 110.24629 * 78.03432 * 4 3 2 37 37 H 1.09002 * 110.24266 * 316.03550 * 4 3 2 38 38 H 1.09003 * 109.46822 * 58.83506 * 7 5 4 39 39 H 1.08991 * 109.47056 * 298.83241 * 7 5 4 40 40 H 0.97001 * 120.00293 * 359.97438 * 8 7 5 41 41 H 1.08993 * 109.47190 * 59.99002 * 11 9 8 42 42 H 1.09004 * 109.46478 * 299.99596 * 11 9 8 43 43 H 0.97004 * 119.99988 * 354.43992 * 17 16 14 44 44 H 1.08003 * 120.00268 * 0.02562 * 23 22 12 45 45 H 1.07998 * 119.99830 * 180.27403 * 24 23 22 46 46 H 1.07995 * 120.00212 * 179.83683 * 25 24 23 47 47 H 1.08001 * 120.00190 * 180.02562 * 26 25 24 48 48 H 1.07994 * 119.99927 * 179.97438 * 27 26 25 49 49 H 1.09000 * 110.48226 * 143.47752 * 28 5 4 50 50 H 1.08992 * 110.48635 * 265.98806 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2955 2.1616 -1.2117 5 6 3.1757 3.3434 -0.7484 6 1 4.2345 3.1030 -0.8438 7 6 2.8344 4.6173 -1.5243 8 7 3.6670 5.7214 -1.0406 9 6 3.5390 6.9491 -1.5817 10 8 2.7349 7.1397 -2.4694 11 6 4.3958 8.0848 -1.0846 12 6 4.0545 9.3586 -1.8603 13 1 4.1414 9.1670 -2.9298 14 6 2.6439 9.7801 -1.5385 15 1 2.2053 9.5167 -0.5874 16 6 1.9131 10.5018 -2.4584 17 7 2.4848 10.9287 -3.5631 18 14 0.1112 10.8733 -2.1354 19 1 -0.4432 11.6578 -3.2679 20 1 -0.0153 11.6584 -0.8813 21 1 -0.6403 9.5997 -2.0001 22 6 5.0088 10.4568 -1.4675 23 6 4.9851 10.9664 -0.1828 24 6 5.8635 11.9707 0.1787 25 6 6.7593 12.4719 -0.7471 26 6 6.7795 11.9659 -2.0334 27 6 5.9042 10.9584 -2.3937 28 6 2.7697 3.4753 0.7378 29 6 2.2708 2.0963 1.1097 30 8 2.1210 1.6945 2.2442 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.3652 2.5306 -1.6436 37 1 2.8337 1.5523 -1.9378 38 1 1.7829 4.8628 -1.3752 39 1 3.0234 4.4578 -2.5858 40 1 4.3099 5.5691 -0.3303 41 1 5.4471 7.8393 -1.2343 42 1 4.2075 8.2441 -0.0228 43 1 3.4381 10.8065 -3.6944 44 1 4.2829 10.5773 0.5396 45 1 5.8479 12.3658 1.1838 46 1 7.4437 13.2583 -0.4654 47 1 7.4797 12.3571 -2.7567 48 1 5.9197 10.5635 -3.3987 49 1 3.6327 3.7457 1.3464 50 1 1.9766 4.2140 0.8526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593825054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:25 Heat of formation + Delta-G solvation = -58.733968 kcal Electronic energy + Delta-G solvation = -29600.199267 eV Core-core repulsion = 25591.542981 eV Total energy + Delta-G solvation = -4008.656286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.81511 -39.20514 -38.33163 -36.94625 -35.37731 -34.25342 -33.22754 -31.36357 -30.24345 -30.11970 -28.98384 -28.27675 -26.04424 -24.57554 -23.55051 -22.82254 -21.68681 -21.15815 -20.40473 -19.73645 -19.29966 -17.20649 -17.01752 -16.77285 -16.30738 -15.84359 -15.62747 -15.35853 -15.07850 -14.47781 -14.29550 -14.10050 -13.96038 -13.85226 -13.67664 -13.65449 -13.20882 -12.90343 -12.81146 -12.57448 -12.44583 -12.37537 -12.20316 -12.07029 -11.85916 -11.65640 -11.47760 -11.40744 -11.23066 -10.91397 -10.72838 -10.44507 -10.14303 -10.04842 -10.00049 -9.69986 -9.10381 -9.06615 -8.72045 -8.61452 -8.29174 -8.15255 -7.65585 -6.23265 -3.92436 2.17648 2.23033 2.34476 2.64333 3.41665 3.49817 3.50421 3.54465 3.70466 4.00341 4.16212 4.39283 4.59321 4.59872 4.66886 4.71771 4.81542 5.00179 5.02674 5.10300 5.24334 5.32327 5.38384 5.42919 5.49330 5.54455 5.58524 5.60119 5.62391 5.74915 5.77424 5.82015 5.93201 5.98350 6.06453 6.15374 6.22556 6.30630 6.40700 6.66700 6.76552 6.77831 6.79500 6.91545 7.19288 7.21495 7.36504 7.71268 7.84384 7.90810 7.94750 8.21677 8.50469 8.93906 8.97740 9.76529 11.16155 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012885 B = 0.002438 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.548577 B =11480.261391 C =12614.214261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.621 5.621 4 C 0.110 3.890 5 C -0.111 4.111 6 H 0.098 0.902 7 C 0.133 3.867 8 N -0.750 5.750 9 C 0.513 3.487 10 O -0.497 6.497 11 C -0.116 4.116 12 C 0.073 3.927 13 H 0.050 0.950 14 C -0.568 4.568 15 H 0.045 0.955 16 C 0.032 3.968 17 N -0.906 5.906 18 Si 1.060 2.940 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.289 1.289 22 C -0.034 4.034 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.152 4.152 26 C -0.125 4.125 27 C -0.130 4.130 28 C -0.153 4.153 29 C 0.519 3.481 30 O -0.534 6.534 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.394 0.606 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.271 0.729 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.110 0.890 49 H 0.104 0.896 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 -16.990 5.210 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.356 5.356 4 C -0.014 4.014 5 C -0.130 4.130 6 H 0.116 0.884 7 C 0.009 3.991 8 N -0.406 5.406 9 C 0.300 3.700 10 O -0.368 6.368 11 C -0.157 4.157 12 C 0.054 3.946 13 H 0.068 0.932 14 C -0.605 4.605 15 H 0.063 0.937 16 C -0.173 4.173 17 N -0.541 5.541 18 Si 0.889 3.111 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.215 1.215 22 C -0.035 4.035 23 C -0.124 4.124 24 C -0.148 4.148 25 C -0.170 4.170 26 C -0.143 4.143 27 C -0.149 4.149 28 C -0.193 4.193 29 C 0.307 3.693 30 O -0.411 6.411 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.227 0.773 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.133 0.867 45 H 0.126 0.874 46 H 0.124 0.876 47 H 0.125 0.875 48 H 0.128 0.872 49 H 0.122 0.878 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.629 -16.432 4.436 17.222 hybrid contribution 1.560 -0.663 0.988 1.962 sum 4.188 -17.095 5.424 18.418 Atomic orbital electron populations 1.22170 0.95685 1.02387 1.02685 1.21345 0.94509 0.81051 1.03074 1.48356 1.66064 1.13845 1.07336 1.22062 0.99833 0.92206 0.87255 1.22402 1.01026 0.95059 0.94547 0.88391 1.21129 0.95915 0.84174 0.97901 1.46127 1.42957 1.09481 1.42017 1.20867 0.84107 0.82592 0.82424 1.90760 1.34870 1.82220 1.28952 1.21663 0.97154 0.95055 1.01788 1.17857 0.93828 0.86528 0.96400 0.93221 1.21531 0.96613 1.38108 1.04283 0.93682 1.25566 1.05327 0.93456 0.92974 1.70734 1.13629 1.43736 1.26019 0.83690 0.75631 0.76231 0.75562 1.20947 1.21733 1.21535 1.20861 0.92074 0.98033 0.92487 1.20930 0.97724 0.96785 0.96923 1.21023 0.97041 0.98024 0.98750 1.20829 1.00661 1.01293 0.94232 1.20966 0.99555 0.97737 0.96053 1.21076 0.96304 0.98133 0.99350 1.22482 1.04125 0.95850 0.96824 1.20953 0.76507 0.87560 0.84279 1.90723 1.53798 1.75375 1.21197 0.92236 0.91404 0.92182 0.90311 0.90079 0.90373 0.89887 0.91285 0.91216 0.77333 0.91622 0.90225 0.91802 0.86654 0.87448 0.87590 0.87465 0.87172 0.87810 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.24 37.16 0.38 -0.82 16 2 C 0.12 0.88 6.65 -4.04 -0.03 0.86 16 3 N -0.62 -5.43 2.93 -172.42 -0.51 -5.93 16 4 C 0.11 0.74 6.91 -3.12 -0.02 0.72 16 5 C -0.11 -0.82 3.22 -88.98 -0.29 -1.11 16 6 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 7 C 0.13 1.43 4.95 -4.04 -0.02 1.41 16 8 N -0.75 -9.49 5.41 -60.29 -0.33 -9.82 16 9 C 0.51 9.46 7.58 -10.98 -0.08 9.38 16 10 O -0.50 -11.77 15.02 5.56 0.08 -11.69 16 11 C -0.12 -2.13 4.96 -27.88 -0.14 -2.27 16 12 C 0.07 1.70 1.24 -92.93 -0.11 1.58 16 13 H 0.05 1.31 6.55 -51.93 -0.34 0.97 16 14 C -0.57 -15.13 6.31 -34.44 -0.22 -15.35 16 15 H 0.04 1.20 7.82 -52.49 -0.41 0.79 16 16 C 0.03 0.92 5.45 -17.82 -0.10 0.82 16 17 N -0.91 -27.36 13.56 55.43 0.75 -26.61 16 18 Si 1.06 25.95 29.91 -169.99 -5.08 20.87 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 C -0.03 -0.73 4.55 -104.62 -0.48 -1.21 16 23 C -0.11 -2.12 8.92 -39.58 -0.35 -2.47 16 24 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 25 C -0.15 -2.60 10.05 -39.58 -0.40 -2.99 16 26 C -0.12 -2.25 10.05 -39.58 -0.40 -2.65 16 27 C -0.13 -2.66 9.27 -39.58 -0.37 -3.03 16 28 C -0.15 -1.35 6.12 -26.74 -0.16 -1.51 16 29 C 0.52 5.86 8.02 -10.86 -0.09 5.78 16 30 O -0.53 -8.18 17.60 5.55 0.10 -8.08 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 36 H 0.08 0.53 7.89 -51.93 -0.41 0.12 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.39 3.78 8.34 -40.82 -0.34 3.44 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 43 H 0.27 8.04 6.32 -40.82 -0.26 7.78 16 44 H 0.12 2.27 7.88 -52.48 -0.41 1.85 16 45 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 46 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 47 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 48 H 0.11 2.21 7.96 -52.49 -0.42 1.79 16 49 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.11 1.05 7.85 -51.93 -0.41 0.65 16 LS Contribution 412.39 15.07 6.21 6.21 Total: -1.00 -35.92 412.39 -10.15 -46.07 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.12 Total: 4.56 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -3.27 Total: -15.58 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: -0.08 Total: -42.36 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.18 Total: -19.77 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.92 -10.15 -46.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593825054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.668 kcal (2) G-P(sol) polarization free energy of solvation -35.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds