Wall clock time and date at job start Wed Apr 1 2020 04:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46806 * 2 1 4 4 C 1.46506 * 119.99911 * 85.00183 * 3 2 1 5 5 C 1.50700 * 109.46957 * 274.99893 * 4 3 2 6 6 H 1.08002 * 119.99770 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00083 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00147 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00278 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47228 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46793 * 300.00001 * 9 7 5 12 12 H 1.48500 * 109.47000 * 60.00094 * 9 7 5 13 13 S 1.65600 * 120.00319 * 265.00038 * 3 2 1 14 14 O 1.42106 * 106.39688 * 23.54101 * 13 3 2 15 15 O 1.42093 * 106.40477 * 156.45662 * 13 3 2 16 16 N 1.65597 * 107.21875 * 270.00412 * 13 3 2 17 17 C 1.47021 * 125.65259 * 90.01822 * 16 13 3 18 18 C 1.54326 * 107.27236 * 181.02348 * 17 16 13 19 19 C 1.55156 * 102.93905 * 22.19361 * 18 17 16 20 20 H 1.08997 * 111.00355 * 82.61539 * 19 18 17 21 21 C 1.53009 * 111.00174 * 206.42144 * 19 18 17 22 22 C 1.52996 * 109.47062 * 298.54978 * 21 19 18 23 23 C 1.53002 * 109.46959 * 179.97438 * 22 21 19 24 24 C 1.53001 * 109.46889 * 60.00195 * 23 22 21 25 25 C 1.53004 * 109.47354 * 299.99790 * 24 23 22 26 26 C 1.52995 * 109.46864 * 178.54781 * 21 19 18 27 27 C 1.47430 * 125.64581 * 269.71226 * 16 13 3 28 28 H 1.08997 * 109.46958 * 299.99306 * 1 2 3 29 29 H 1.08993 * 109.47130 * 60.00329 * 1 2 3 30 30 H 1.09006 * 109.46262 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47455 * 240.00590 * 2 1 3 32 32 H 1.09000 * 109.47451 * 119.99450 * 2 1 3 33 33 H 1.08994 * 109.47197 * 155.00282 * 4 3 2 34 34 H 1.08998 * 109.47414 * 34.99963 * 4 3 2 35 35 H 0.97005 * 119.99661 * 359.97438 * 8 7 5 36 36 H 1.09000 * 109.88651 * 300.44199 * 17 16 13 37 37 H 1.08999 * 109.88191 * 61.60880 * 17 16 13 38 38 H 1.09000 * 110.72049 * 140.56043 * 18 17 16 39 39 H 1.09001 * 110.71769 * 263.65657 * 18 17 16 40 40 H 1.08998 * 109.46822 * 58.55193 * 21 19 18 41 41 H 1.08998 * 109.47478 * 299.99814 * 22 21 19 42 42 H 1.08998 * 109.47366 * 60.00404 * 22 21 19 43 43 H 1.08993 * 109.47559 * 300.00369 * 23 22 21 44 44 H 1.09001 * 109.47106 * 179.97438 * 23 22 21 45 45 H 1.09008 * 109.47535 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.47540 * 59.99797 * 24 23 22 47 47 H 1.09000 * 109.46803 * 300.00459 * 25 24 23 48 48 H 1.08991 * 109.47399 * 180.02562 * 25 24 23 49 49 H 1.08996 * 109.47647 * 299.99910 * 26 21 19 50 50 H 1.09000 * 109.47449 * 60.00197 * 26 21 19 51 51 H 1.09001 * 110.36934 * 274.75152 * 27 16 13 52 52 H 1.09001 * 110.36395 * 37.06678 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1088 1.2640 5 6 0.8359 2.7288 1.6357 6 1 -0.0229 2.5941 0.9947 7 6 0.7225 3.4681 2.7939 8 7 1.7683 3.6326 3.5741 9 14 -0.9167 4.2361 3.2551 10 1 -0.7749 4.9736 4.5361 11 1 -1.3410 5.1761 2.1865 12 1 -1.9375 3.1687 3.4094 13 16 2.4121 2.1204 -1.4286 14 8 1.6867 1.4416 -2.4447 15 8 2.3055 3.5187 -1.1998 16 7 4.0143 1.8139 -1.7137 17 6 4.5476 0.6628 -2.4567 18 6 6.0862 0.7821 -2.4440 19 6 6.3542 1.6875 -1.2128 20 1 6.3517 1.1050 -0.2916 21 6 7.6699 2.4525 -1.3708 22 6 8.8286 1.4587 -1.4729 23 6 10.1441 2.2237 -1.6315 24 6 10.3559 3.1310 -0.4179 25 6 9.1971 4.1249 -0.3157 26 6 7.8813 3.3595 -0.1569 27 6 5.1419 2.6536 -1.2700 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.9078 2.8919 1.1514 34 1 2.4690 1.4184 2.0481 35 1 2.6194 3.2334 3.3348 36 1 4.2437 -0.2647 -1.9715 37 1 4.1827 0.6831 -3.4836 38 1 6.5478 -0.1963 -2.3111 39 1 6.4439 1.2547 -3.3588 40 1 7.6309 3.0594 -2.2753 41 1 8.8676 0.8518 -0.5684 42 1 8.6780 0.8126 -2.3378 43 1 10.1049 2.8303 -2.5362 44 1 10.9697 1.5156 -1.7038 45 1 11.2929 3.6764 -0.5310 46 1 10.3951 2.5244 0.4869 47 1 9.1579 4.7315 -1.2205 48 1 9.3482 4.7715 0.5485 49 1 7.0558 4.0675 -0.0841 50 1 7.9202 2.7526 0.7477 51 1 5.3247 3.4535 -1.9875 52 1 4.9405 3.0679 -0.2820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594841198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:41 Heat of formation + Delta-G solvation = -110.303832 kcal Electronic energy + Delta-G solvation = -30352.836915 eV Core-core repulsion = 26477.388343 eV Total energy + Delta-G solvation = -3875.448572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.66792 -37.46163 -36.68285 -36.17306 -35.19335 -32.81794 -32.62108 -31.04817 -29.81358 -29.60074 -27.94038 -26.28200 -23.32366 -22.89859 -22.73511 -22.04129 -21.57723 -20.24933 -19.96308 -18.58461 -17.50158 -17.03061 -16.73251 -16.18354 -15.38035 -15.05678 -14.60614 -14.31385 -14.24677 -13.99216 -13.68185 -13.60730 -13.45839 -13.31704 -13.07955 -13.02361 -12.67993 -12.51708 -12.31016 -12.16888 -11.91910 -11.72091 -11.56140 -11.46438 -11.34534 -11.30563 -11.28949 -11.19132 -11.07412 -10.97622 -10.81078 -10.76289 -10.57187 -10.48897 -10.20981 -10.09778 -10.04509 -10.02928 -9.30488 -8.85227 -8.36955 -7.96082 -6.37711 -4.09036 1.10415 3.44670 3.46379 3.49720 3.66487 4.04543 4.27998 4.40054 4.49896 4.55099 4.66194 4.72580 4.83208 5.00423 5.07010 5.15483 5.25128 5.28029 5.29898 5.36076 5.38268 5.40635 5.43271 5.48862 5.51585 5.59686 5.69633 5.73723 5.79783 5.81770 5.87438 5.88054 5.93050 5.95847 5.98081 6.01476 6.08174 6.11944 6.18711 6.22124 6.29346 6.37033 6.38886 6.50532 6.67513 6.87801 6.96991 7.21331 7.49740 8.02705 8.46115 8.80949 9.59245 10.99650 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012433 B = 0.003548 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.449411 B = 7890.562027 C = 9374.146380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.137 3.863 3 N -0.988 5.988 4 C 0.250 3.750 5 C -0.604 4.604 6 H 0.057 0.943 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 1.067 2.933 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.287 1.287 13 S 2.791 3.209 14 O -0.990 6.990 15 O -0.959 6.959 16 N -1.025 6.025 17 C 0.122 3.878 18 C -0.122 4.122 19 C -0.094 4.094 20 H 0.086 0.914 21 C -0.075 4.075 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.120 4.120 27 C 0.128 3.872 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.023 0.977 35 H 0.266 0.734 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.067 0.933 50 H 0.064 0.936 51 H 0.066 0.934 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.085 -6.976 -10.280 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.010 3.990 3 N -0.830 5.830 4 C 0.128 3.872 5 C -0.643 4.643 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.546 5.546 9 Si 0.895 3.105 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.214 1.214 13 S 2.801 3.199 14 O -0.975 6.975 15 O -0.943 6.943 16 N -0.863 5.863 17 C -0.004 4.004 18 C -0.160 4.160 19 C -0.114 4.114 20 H 0.104 0.896 21 C -0.094 4.094 22 C -0.150 4.150 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.158 4.158 27 C 0.002 3.998 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.083 0.917 51 H 0.084 0.916 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.642 -5.521 -9.666 18.393 hybrid contribution 0.934 -1.187 -0.885 1.751 sum 15.577 -6.708 -10.551 19.974 Atomic orbital electron populations 1.22252 0.96182 1.00874 1.03766 1.20944 0.95010 0.82134 1.00891 1.57725 1.78173 1.23037 1.24055 1.19075 0.97886 0.90468 0.79794 1.22324 0.96356 1.35545 1.10084 0.92489 1.25770 1.04326 0.95148 0.93067 1.70827 1.01452 1.43417 1.38930 0.83576 0.74147 0.76464 0.76341 1.20702 1.21246 1.21399 1.01702 0.71718 0.73565 0.72894 1.93530 1.69768 1.76535 1.57627 1.93623 1.84964 1.30128 1.85612 1.59435 1.24002 1.34398 1.68485 1.21624 0.94255 0.88379 0.96157 1.22675 0.94448 1.00349 0.98567 1.22500 0.93614 0.96403 0.98887 0.89601 1.21126 0.93058 0.96241 0.98968 1.21580 0.93943 0.97613 1.01911 1.21528 0.97318 0.98472 0.98325 1.21546 0.98047 0.97717 0.98448 1.21535 0.94684 0.97703 1.01766 1.21653 0.97516 0.98613 0.97976 1.22032 0.84901 0.92817 1.00018 0.90197 0.92813 0.93018 0.92229 0.91307 0.95842 0.95940 0.92406 0.92117 0.91570 0.90409 0.90702 0.90908 0.91938 0.91890 0.92141 0.92314 0.92408 0.92065 0.92106 0.92018 0.91399 0.91708 0.91598 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.83 37.16 0.37 -2.78 16 2 C 0.14 2.45 6.09 -4.04 -0.02 2.43 16 3 N -0.99 -20.89 2.86 -115.66 -0.33 -21.22 16 4 C 0.25 6.21 4.43 -5.19 -0.02 6.18 16 5 C -0.60 -16.95 8.41 -34.44 -0.29 -17.24 16 6 H 0.06 1.62 6.89 -52.49 -0.36 1.26 16 7 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 8 N -0.91 -27.11 13.65 55.43 0.76 -26.36 16 9 Si 1.07 25.63 29.90 -169.99 -5.08 20.54 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 S 2.79 57.95 6.26 -107.50 -0.67 57.27 16 14 O -0.99 -21.39 16.69 -57.17 -0.95 -22.34 16 15 O -0.96 -23.78 16.69 -57.17 -0.95 -24.73 16 16 N -1.02 -16.34 3.75 -111.29 -0.42 -16.76 16 17 C 0.12 1.51 6.99 -3.06 -0.02 1.49 16 18 C -0.12 -1.15 5.35 -24.90 -0.13 -1.28 16 19 C -0.09 -0.99 2.58 -88.35 -0.23 -1.22 16 20 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.07 -0.68 1.70 -90.62 -0.15 -0.83 16 22 C -0.11 -0.87 5.00 -26.73 -0.13 -1.00 16 23 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 24 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 25 C -0.12 -1.03 5.93 -26.70 -0.16 -1.18 16 26 C -0.12 -1.17 5.06 -26.71 -0.14 -1.30 16 27 C 0.13 1.81 5.64 -2.41 -0.01 1.79 16 28 H 0.08 1.64 6.59 -51.93 -0.34 1.30 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.93 7.61 -51.93 -0.40 0.54 16 32 H 0.07 1.14 8.00 -51.93 -0.42 0.73 16 33 H 0.02 0.62 7.47 -51.93 -0.39 0.23 16 34 H 0.02 0.56 7.87 -51.93 -0.41 0.15 16 35 H 0.27 7.77 7.22 -40.82 -0.29 7.47 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.60 8.11 -51.93 -0.42 0.18 16 39 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 40 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.45 7.32 -51.93 -0.38 0.06 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.74 7.45 -51.93 -0.39 0.35 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.07 0.89 8.01 -51.93 -0.42 0.47 16 52 H 0.08 1.19 8.06 -51.93 -0.42 0.77 16 LS Contribution 408.03 15.07 6.15 6.15 Total: -1.00 -33.51 408.03 -12.63 -46.14 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -9.76 Total: -2.16 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -1.36 Total: -16.53 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: 0.01 Total: -64.34 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -1.91 Total: -47.07 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.08 Total: 20.54 kcal Atomic # 16 Polarization: 57.95 SS G_CDS: -0.67 Total: 57.27 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.51 -12.63 -46.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594841198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.165 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds