Wall clock time and date at job start Wed Apr 1 2020 04:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46806 * 2 1 4 4 C 1.46506 * 119.99911 * 85.00183 * 3 2 1 5 5 C 1.50700 * 109.46957 * 274.99893 * 4 3 2 6 6 H 1.08002 * 119.99770 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00083 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00147 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00278 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47228 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46793 * 300.00001 * 9 7 5 12 12 H 1.48500 * 109.47000 * 60.00094 * 9 7 5 13 13 S 1.65600 * 120.00319 * 265.00038 * 3 2 1 14 14 O 1.42106 * 106.39688 * 23.54101 * 13 3 2 15 15 O 1.42093 * 106.40477 * 156.45662 * 13 3 2 16 16 N 1.65597 * 107.21875 * 270.00412 * 13 3 2 17 17 C 1.47021 * 125.65259 * 90.01822 * 16 13 3 18 18 C 1.54326 * 107.27236 * 181.02348 * 17 16 13 19 19 C 1.55156 * 102.93905 * 22.19361 * 18 17 16 20 20 H 1.08997 * 111.00355 * 82.61539 * 19 18 17 21 21 C 1.53009 * 111.00174 * 206.42144 * 19 18 17 22 22 C 1.52996 * 109.47062 * 298.54978 * 21 19 18 23 23 C 1.53002 * 109.46959 * 179.97438 * 22 21 19 24 24 C 1.53001 * 109.46889 * 60.00195 * 23 22 21 25 25 C 1.53004 * 109.47354 * 299.99790 * 24 23 22 26 26 C 1.52995 * 109.46864 * 178.54781 * 21 19 18 27 27 C 1.47430 * 125.64581 * 269.71226 * 16 13 3 28 28 H 1.08997 * 109.46958 * 299.99306 * 1 2 3 29 29 H 1.08993 * 109.47130 * 60.00329 * 1 2 3 30 30 H 1.09006 * 109.46262 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47455 * 240.00590 * 2 1 3 32 32 H 1.09000 * 109.47451 * 119.99450 * 2 1 3 33 33 H 1.08994 * 109.47197 * 155.00282 * 4 3 2 34 34 H 1.08998 * 109.47414 * 34.99963 * 4 3 2 35 35 H 0.97005 * 119.99661 * 359.97438 * 8 7 5 36 36 H 1.09000 * 109.88651 * 300.44199 * 17 16 13 37 37 H 1.08999 * 109.88191 * 61.60880 * 17 16 13 38 38 H 1.09000 * 110.72049 * 140.56043 * 18 17 16 39 39 H 1.09001 * 110.71769 * 263.65657 * 18 17 16 40 40 H 1.08998 * 109.46822 * 58.55193 * 21 19 18 41 41 H 1.08998 * 109.47478 * 299.99814 * 22 21 19 42 42 H 1.08998 * 109.47366 * 60.00404 * 22 21 19 43 43 H 1.08993 * 109.47559 * 300.00369 * 23 22 21 44 44 H 1.09001 * 109.47106 * 179.97438 * 23 22 21 45 45 H 1.09008 * 109.47535 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.47540 * 59.99797 * 24 23 22 47 47 H 1.09000 * 109.46803 * 300.00459 * 25 24 23 48 48 H 1.08991 * 109.47399 * 180.02562 * 25 24 23 49 49 H 1.08996 * 109.47647 * 299.99910 * 26 21 19 50 50 H 1.09000 * 109.47449 * 60.00197 * 26 21 19 51 51 H 1.09001 * 110.36934 * 274.75152 * 27 16 13 52 52 H 1.09001 * 110.36395 * 37.06678 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1088 1.2640 5 6 0.8359 2.7288 1.6357 6 1 -0.0229 2.5941 0.9947 7 6 0.7225 3.4681 2.7939 8 7 1.7683 3.6326 3.5741 9 14 -0.9167 4.2361 3.2551 10 1 -0.7749 4.9736 4.5361 11 1 -1.3410 5.1761 2.1865 12 1 -1.9375 3.1687 3.4094 13 16 2.4121 2.1204 -1.4286 14 8 1.6867 1.4416 -2.4447 15 8 2.3055 3.5187 -1.1998 16 7 4.0143 1.8139 -1.7137 17 6 4.5476 0.6628 -2.4567 18 6 6.0862 0.7821 -2.4440 19 6 6.3542 1.6875 -1.2128 20 1 6.3517 1.1050 -0.2916 21 6 7.6699 2.4525 -1.3708 22 6 8.8286 1.4587 -1.4729 23 6 10.1441 2.2237 -1.6315 24 6 10.3559 3.1310 -0.4179 25 6 9.1971 4.1249 -0.3157 26 6 7.8813 3.3595 -0.1569 27 6 5.1419 2.6536 -1.2700 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.9078 2.8919 1.1514 34 1 2.4690 1.4184 2.0481 35 1 2.6194 3.2334 3.3348 36 1 4.2437 -0.2647 -1.9715 37 1 4.1827 0.6831 -3.4836 38 1 6.5478 -0.1963 -2.3111 39 1 6.4439 1.2547 -3.3588 40 1 7.6309 3.0594 -2.2753 41 1 8.8676 0.8518 -0.5684 42 1 8.6780 0.8126 -2.3378 43 1 10.1049 2.8303 -2.5362 44 1 10.9697 1.5156 -1.7038 45 1 11.2929 3.6764 -0.5310 46 1 10.3951 2.5244 0.4869 47 1 9.1579 4.7315 -1.2205 48 1 9.3482 4.7715 0.5485 49 1 7.0558 4.0675 -0.0841 50 1 7.9202 2.7526 0.7477 51 1 5.3247 3.4535 -1.9875 52 1 4.9405 3.0679 -0.2820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594841198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:40 Heat of formation + Delta-G solvation = -130.910208 kcal Electronic energy + Delta-G solvation = -30353.730475 eV Core-core repulsion = 26477.388343 eV Total energy + Delta-G solvation = -3876.342132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.51860 -38.43826 -38.33738 -37.91751 -36.96980 -34.90626 -33.51474 -31.74158 -31.44625 -30.55608 -28.89213 -28.26505 -24.82484 -24.25577 -23.61057 -23.53717 -22.52709 -21.08488 -20.65293 -20.07797 -19.33807 -18.65848 -18.47922 -17.34051 -16.80119 -15.97478 -15.84406 -15.61179 -15.53032 -15.21617 -15.00264 -14.85191 -14.77257 -14.61206 -14.35430 -14.03533 -13.95956 -13.69064 -13.58276 -13.48173 -13.39849 -13.30220 -13.12271 -13.01805 -12.84314 -12.62457 -12.58108 -12.29159 -12.18889 -12.02808 -11.99947 -11.97727 -11.87679 -11.72106 -11.54259 -11.27220 -11.25092 -10.82504 -10.75023 -10.56349 -10.10949 -9.81021 -8.64343 -6.37161 -0.51309 1.50207 1.58295 1.77281 1.92960 2.46070 2.55642 3.10977 3.15474 3.46196 3.67316 3.71573 3.81739 3.95736 4.05255 4.12766 4.25852 4.34491 4.36020 4.37040 4.43149 4.49968 4.51566 4.59193 4.67384 4.68474 4.70608 4.72120 4.80036 4.82507 4.86251 4.88043 4.93323 4.97027 5.04534 5.07908 5.08524 5.23404 5.26521 5.31026 5.32307 5.35501 5.37385 5.44578 5.46434 5.49117 5.53146 5.67239 5.78448 5.87522 6.22589 6.54551 7.37881 8.72629 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012433 B = 0.003548 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.449411 B = 7890.562027 C = 9374.146380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 N -0.994 5.994 4 C 0.265 3.735 5 C -0.615 4.615 6 H 0.047 0.953 7 C -0.027 4.027 8 N -0.931 5.931 9 Si 1.106 2.894 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.265 1.265 13 S 2.803 3.197 14 O -1.001 7.001 15 O -1.010 7.010 16 N -1.021 6.021 17 C 0.107 3.893 18 C -0.109 4.109 19 C -0.084 4.084 20 H 0.083 0.917 21 C -0.069 4.069 22 C -0.109 4.109 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.123 4.123 27 C 0.119 3.881 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.004 0.996 34 H 0.022 0.978 35 H 0.257 0.743 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.056 0.944 49 H 0.046 0.954 50 H 0.058 0.942 51 H 0.070 0.930 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.370 -8.978 -11.551 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.834 5.834 4 C 0.140 3.860 5 C -0.654 4.654 6 H 0.066 0.934 7 C -0.226 4.226 8 N -0.568 5.568 9 Si 0.928 3.072 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.190 1.190 13 S 2.814 3.186 14 O -0.985 6.985 15 O -0.994 6.994 16 N -0.863 5.863 17 C -0.017 4.017 18 C -0.147 4.147 19 C -0.104 4.104 20 H 0.101 0.899 21 C -0.088 4.088 22 C -0.146 4.146 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.156 4.156 26 C -0.161 4.161 27 C -0.006 4.006 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.022 0.978 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.076 0.924 51 H 0.088 0.912 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.919 -7.559 -10.956 20.751 hybrid contribution 0.585 -0.592 -0.548 0.996 sum 16.503 -8.151 -11.504 21.706 Atomic orbital electron populations 1.22225 0.96507 1.02695 1.01484 1.21266 0.94866 0.80681 1.03067 1.57653 1.79083 1.24139 1.22573 1.18668 0.95871 0.90114 0.81302 1.22650 0.97340 1.35536 1.09887 0.93423 1.27096 1.06713 0.95479 0.93335 1.70929 1.01661 1.44573 1.39683 0.83083 0.71323 0.76548 0.76270 1.20274 1.20774 1.18950 1.01022 0.72648 0.72383 0.72584 1.93502 1.70979 1.76347 1.57654 1.93551 1.86278 1.33362 1.86205 1.59031 1.22654 1.36013 1.68626 1.22033 0.96430 0.87271 0.95967 1.22703 0.92060 1.01650 0.98317 1.22450 0.92532 0.95748 0.99694 0.89908 1.21085 0.92864 0.96356 0.98453 1.21556 0.93252 0.97245 1.02552 1.21527 0.97416 0.98549 0.97977 1.21543 0.97752 0.97575 0.98785 1.21526 0.94510 0.97902 1.01680 1.21660 0.97542 0.98494 0.98371 1.22231 0.85861 0.93846 0.98663 0.93031 0.94401 0.89192 0.89299 0.89761 0.97816 0.96031 0.93312 0.90860 0.91091 0.87444 0.89130 0.90553 0.92071 0.90319 0.91841 0.91117 0.91587 0.92344 0.91896 0.92488 0.93494 0.92368 0.91204 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.08 9.83 71.98 0.71 -5.37 16 2 C 0.13 4.38 6.09 86.38 0.53 4.91 16 3 N -0.99 -42.47 2.86 -519.84 -1.48 -43.96 16 4 C 0.26 13.55 4.43 85.63 0.38 13.93 16 5 C -0.61 -35.41 8.41 25.60 0.22 -35.19 16 6 H 0.05 2.78 6.89 -2.91 -0.02 2.76 16 7 C -0.03 -1.59 5.46 84.65 0.46 -1.13 16 8 N -0.93 -56.75 13.65 21.45 0.29 -56.46 16 9 Si 1.11 51.91 29.90 68.60 2.05 53.96 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 13 S 2.80 118.17 6.26 -56.49 -0.35 117.81 16 14 O -1.00 -42.91 16.69 -128.00 -2.14 -45.05 16 15 O -1.01 -52.24 16.69 -128.00 -2.14 -54.38 16 16 N -1.02 -32.23 3.75 -506.01 -1.90 -34.13 16 17 C 0.11 2.41 6.99 86.73 0.61 3.02 16 18 C -0.11 -1.67 5.35 31.78 0.17 -1.50 16 19 C -0.08 -1.65 2.58 -9.32 -0.02 -1.68 16 20 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 21 C -0.07 -1.13 1.70 -10.79 -0.02 -1.15 16 22 C -0.11 -1.35 5.00 30.59 0.15 -1.20 16 23 C -0.12 -1.37 5.92 30.60 0.18 -1.19 16 24 C -0.12 -1.62 5.92 30.60 0.18 -1.44 16 25 C -0.12 -1.98 5.93 30.61 0.18 -1.80 16 26 C -0.12 -2.41 5.06 30.61 0.15 -2.25 16 27 C 0.12 3.41 5.64 86.93 0.49 3.90 16 28 H 0.05 2.12 6.59 -2.39 -0.02 2.10 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 31 H 0.09 2.57 7.61 -2.39 -0.02 2.55 16 32 H 0.08 2.66 8.00 -2.39 -0.02 2.64 16 33 H 0.00 0.22 7.47 -2.39 -0.02 0.20 16 34 H 0.02 1.11 7.87 -2.39 -0.02 1.09 16 35 H 0.26 15.60 7.22 -92.70 -0.67 14.93 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.11 1.12 8.11 -2.39 -0.02 1.10 16 39 H 0.09 1.17 8.04 -2.39 -0.02 1.15 16 40 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 0.77 7.32 -2.39 -0.02 0.75 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.05 1.09 7.45 -2.39 -0.02 1.07 16 50 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.07 1.92 8.01 -2.39 -0.02 1.90 16 52 H 0.05 1.66 8.06 -2.39 -0.02 1.64 16 Total: -1.00 -74.43 408.03 -0.34 -74.78 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.96 Total: 15.57 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 4.37 Total: -28.15 kcal Atomic # 7 Polarization: -131.45 SS G_CDS: -3.09 Total: -134.54 kcal Atomic # 8 Polarization: -95.16 SS G_CDS: -4.27 Total: -99.43 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 2.05 Total: 53.96 kcal Atomic # 16 Polarization: 118.17 SS G_CDS: -0.35 Total: 117.81 kcal Total: -74.43 -0.34 -74.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594841198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.134 kcal (2) G-P(sol) polarization free energy of solvation -74.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds