Wall clock time and date at job start Wed Apr 1 2020 04:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46901 * 2 1 4 4 C 1.46507 * 120.00131 * 274.99953 * 3 2 1 5 5 C 1.50699 * 109.46976 * 275.00038 * 4 3 2 6 6 H 1.08005 * 120.00045 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00120 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99874 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00234 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47440 * 59.99708 * 9 7 5 11 11 H 1.48498 * 109.47534 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47037 * 300.00021 * 9 7 5 13 13 S 1.65595 * 120.00234 * 95.00125 * 3 2 1 14 14 O 1.42112 * 106.40186 * 336.45662 * 13 3 2 15 15 O 1.42099 * 106.40592 * 203.53994 * 13 3 2 16 16 N 1.65602 * 107.22073 * 89.99592 * 13 3 2 17 17 C 1.46500 * 119.99755 * 65.00311 * 16 13 3 18 18 C 1.52997 * 109.47007 * 215.00078 * 17 16 13 19 19 C 1.53002 * 109.46817 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47233 * 60.00194 * 19 18 17 21 21 C 1.53002 * 109.47233 * 179.97438 * 20 19 18 22 22 C 1.53785 * 113.61112 * 277.49499 * 21 20 19 23 23 C 1.53779 * 87.07854 * 220.01691 * 22 21 20 24 24 C 1.53777 * 87.08356 * 25.43282 * 23 22 21 25 25 C 1.52997 * 109.47060 * 299.99657 * 20 19 18 26 26 C 1.52999 * 109.47317 * 59.99960 * 25 20 19 27 27 H 1.08999 * 109.46564 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47303 * 300.00284 * 1 2 3 29 29 H 1.09007 * 109.46747 * 60.00230 * 1 2 3 30 30 H 1.08999 * 109.47406 * 240.00299 * 2 1 3 31 31 H 1.08996 * 109.47222 * 119.99872 * 2 1 3 32 32 H 1.08994 * 109.47063 * 34.99723 * 4 3 2 33 33 H 1.09000 * 109.47205 * 155.00239 * 4 3 2 34 34 H 0.96998 * 119.99891 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00256 * 245.00361 * 16 13 3 36 36 H 1.09002 * 109.47092 * 335.00026 * 17 16 13 37 37 H 1.08993 * 109.47194 * 59.99623 * 18 17 16 38 38 H 1.09002 * 109.46695 * 299.99637 * 18 17 16 39 39 H 1.08992 * 109.47063 * 299.99823 * 19 18 17 40 40 H 1.09004 * 109.46733 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.47398 * 59.99826 * 20 19 18 42 42 H 1.09004 * 112.84805 * 48.79478 * 21 20 19 43 43 H 1.09001 * 113.61651 * 334.56696 * 22 21 20 44 44 H 1.09001 * 113.60934 * 105.46822 * 22 21 20 45 45 H 1.09005 * 113.61342 * 270.88516 * 23 22 21 46 46 H 1.08997 * 113.61512 * 139.98666 * 23 22 21 47 47 H 1.08995 * 113.61914 * 220.02103 * 24 23 22 48 48 H 1.09003 * 113.68973 * 89.12299 * 24 23 22 49 49 H 1.08996 * 109.47853 * 180.02562 * 25 20 19 50 50 H 1.09002 * 109.47153 * 300.00319 * 25 20 19 51 51 H 1.09000 * 109.47486 * 180.02562 * 26 25 20 52 52 H 1.09002 * 109.46716 * 60.00091 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1720 1.1112 -1.3839 7 6 3.8525 2.3607 -3.0849 8 7 3.0272 3.1848 -3.6925 9 14 5.5089 1.9637 -3.8517 10 1 5.5987 0.5037 -4.1079 11 1 5.6503 2.7002 -5.1334 12 1 6.5944 2.3711 -2.9238 13 16 2.4121 2.1203 1.4286 14 8 1.6867 1.4416 2.4448 15 8 2.3056 3.5187 1.1998 16 7 4.0144 1.8138 1.7137 17 6 5.0350 2.3525 0.8114 18 6 6.1867 1.3528 0.6892 19 6 7.2530 1.9158 -0.2527 20 6 7.7822 3.2374 0.3079 21 6 8.8489 3.8001 -0.6337 22 6 10.2435 3.1882 -0.4203 23 6 10.8100 4.6017 -0.6341 24 6 9.4480 5.1343 -0.1588 25 6 6.6305 4.2371 0.4300 26 6 5.5642 3.6743 1.3719 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3618 1.8098 -1.9453 33 1 2.0921 3.1804 -1.0756 34 1 3.2787 3.5868 -4.5387 35 1 4.2771 1.2776 2.4781 36 1 4.5968 2.5239 -0.1718 37 1 5.8097 0.4111 0.2904 38 1 6.6249 1.1815 1.6725 39 1 6.8151 2.0875 -1.2359 40 1 8.0737 1.2037 -0.3394 41 1 8.2201 3.0657 1.2912 42 1 8.5302 3.8108 -1.6761 43 1 10.4015 2.8021 0.5867 44 1 10.5329 2.4798 -1.1966 45 1 11.0288 4.8314 -1.6770 46 1 11.6333 4.8482 0.0363 47 1 9.0951 5.9970 -0.7238 48 1 9.3872 5.2809 0.9197 49 1 7.0074 5.1788 0.8289 50 1 6.1926 4.4089 -0.5533 51 1 4.7435 4.3863 1.4586 52 1 6.0021 3.5025 2.3551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595384079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:05 Heat of formation + Delta-G solvation = -89.957911 kcal Electronic energy + Delta-G solvation = -31183.931071 eV Core-core repulsion = 27309.364764 eV Total energy + Delta-G solvation = -3874.566307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.63626 -37.53937 -36.52538 -35.99743 -35.12436 -33.60013 -32.76655 -30.44654 -29.93837 -28.96173 -26.65112 -25.62833 -24.46347 -23.15230 -22.17435 -21.73767 -21.22413 -19.72446 -19.25056 -18.62285 -17.04239 -16.82729 -16.41942 -15.91124 -15.50037 -15.21631 -15.00497 -14.47130 -13.97875 -13.83216 -13.74837 -13.34269 -12.98973 -12.92802 -12.86392 -12.50755 -12.42931 -12.10620 -11.96263 -11.89343 -11.84204 -11.67663 -11.54206 -11.39599 -11.32541 -11.22572 -11.10927 -11.03277 -10.71007 -10.62411 -10.56092 -10.46421 -10.43921 -10.23040 -10.11994 -9.82917 -9.75328 -9.63989 -9.48036 -8.82927 -8.51919 -8.05691 -6.16668 -4.22990 1.38884 3.17810 3.26256 3.27743 3.61833 4.23472 4.29878 4.61602 4.66876 4.74807 4.85869 5.08970 5.12568 5.16864 5.25454 5.29244 5.45044 5.55170 5.62383 5.67869 5.73153 5.74778 5.77117 5.80156 5.86302 5.87163 5.89488 5.91395 5.94758 6.01164 6.05313 6.12688 6.25385 6.29031 6.33265 6.36698 6.40899 6.54425 6.59703 6.60443 6.66848 6.69518 6.77160 6.81373 7.01680 7.34238 7.38905 7.53495 7.70187 7.81823 8.10728 8.81185 9.41550 10.90567 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.004680 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.041606 B = 5980.910394 C = 7370.190678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.993 5.993 4 C 0.242 3.758 5 C -0.545 4.545 6 H 0.068 0.932 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.877 3.123 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.255 1.255 13 S 2.784 3.216 14 O -1.006 7.006 15 O -0.979 6.979 16 N -1.125 6.125 17 C 0.130 3.870 18 C -0.114 4.114 19 C -0.125 4.125 20 C -0.073 4.073 21 C -0.106 4.106 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.136 4.136 25 C -0.111 4.111 26 C -0.132 4.132 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.137 0.863 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.079 0.921 49 H 0.059 0.941 50 H 0.071 0.929 51 H 0.073 0.927 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.911 -2.230 7.065 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.835 5.835 4 C 0.120 3.880 5 C -0.584 4.584 6 H 0.086 0.914 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.705 3.295 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.180 1.180 13 S 2.792 3.208 14 O -0.990 6.990 15 O -0.963 6.963 16 N -0.881 5.881 17 C 0.024 3.976 18 C -0.153 4.153 19 C -0.163 4.163 20 C -0.091 4.091 21 C -0.124 4.124 22 C -0.174 4.174 23 C -0.182 4.182 24 C -0.173 4.173 25 C -0.149 4.149 26 C -0.171 4.171 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.234 0.766 36 H 0.154 0.846 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.097 0.903 49 H 0.078 0.922 50 H 0.089 0.911 51 H 0.092 0.908 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.213 -1.471 7.275 11.831 hybrid contribution 1.312 -0.742 -0.509 1.591 sum 10.525 -2.214 6.766 12.707 Atomic orbital electron populations 1.22208 0.97044 1.01321 1.02355 1.20946 0.93568 0.82941 1.02034 1.57711 1.78742 1.22861 1.24147 1.19215 0.97279 0.92322 0.79159 1.21554 1.02389 1.28250 1.06163 0.91355 1.24934 0.97067 0.94710 0.96727 1.69922 1.35887 1.29380 1.16917 0.86975 0.84860 0.78659 0.78999 1.20259 1.21442 1.18046 1.01760 0.72672 0.73760 0.72560 1.93535 1.70828 1.76349 1.58262 1.93572 1.85972 1.31077 1.85663 1.56073 1.25544 1.68248 1.38277 1.21430 0.88787 0.91755 0.95640 1.21695 0.95599 0.98808 0.99186 1.21788 0.97705 0.96028 1.00767 1.21134 0.94879 0.95226 0.97884 1.22608 0.93827 0.95770 1.00189 1.22944 0.96558 0.96311 1.01594 1.22812 0.97074 0.97131 1.01150 1.22911 0.95964 0.97444 1.01012 1.21507 0.95092 0.97575 1.00737 1.22014 0.98884 0.97842 0.98364 0.92422 0.92687 0.92102 0.90283 0.91988 0.94432 0.93095 0.92478 0.76646 0.84571 0.91493 0.92725 0.89920 0.92459 0.91738 0.89257 0.90359 0.91920 0.90522 0.91952 0.91689 0.90259 0.92206 0.91071 0.90790 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.24 37.16 0.38 -2.32 16 2 C 0.13 2.27 6.06 -4.04 -0.02 2.25 16 3 N -0.99 -19.99 2.82 -115.66 -0.33 -20.32 16 4 C 0.24 5.76 5.31 -5.19 -0.03 5.73 16 5 C -0.54 -13.16 6.91 -34.44 -0.24 -13.40 16 6 H 0.07 1.57 6.95 -52.48 -0.36 1.21 16 7 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.88 -24.08 13.29 55.43 0.74 -23.34 16 9 Si 0.88 19.03 28.99 -169.99 -4.93 14.11 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.25 -5.04 4.91 56.52 0.28 -4.77 16 13 S 2.78 55.14 6.01 -107.50 -0.65 54.49 16 14 O -1.01 -20.67 17.11 -57.17 -0.98 -21.65 16 15 O -0.98 -22.58 15.95 -57.17 -0.91 -23.49 16 16 N -1.12 -18.56 5.53 -4.89 -0.03 -18.58 16 17 C 0.13 2.22 2.39 -67.93 -0.16 2.05 16 18 C -0.11 -1.67 5.45 -26.73 -0.15 -1.82 16 19 C -0.13 -1.83 5.20 -26.73 -0.14 -1.97 16 20 C -0.07 -0.97 1.94 -90.62 -0.18 -1.14 16 21 C -0.11 -1.31 3.13 -89.81 -0.28 -1.59 16 22 C -0.14 -1.46 7.63 -25.92 -0.20 -1.65 16 23 C -0.14 -1.43 8.08 -25.92 -0.21 -1.64 16 24 C -0.14 -1.48 6.68 -25.92 -0.17 -1.65 16 25 C -0.11 -1.65 5.01 -26.73 -0.13 -1.78 16 26 C -0.13 -2.11 5.53 -26.73 -0.15 -2.26 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 31 H 0.06 0.96 7.61 -51.93 -0.40 0.57 16 32 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 33 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.40 5.49 8.84 -34.47 -0.30 5.18 16 36 H 0.14 2.78 4.25 -51.93 -0.22 2.56 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.43 5.19 -51.93 -0.27 1.16 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.79 7.94 -51.93 -0.41 0.38 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.08 0.79 7.96 -51.93 -0.41 0.37 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 49 H 0.06 0.79 7.45 -51.93 -0.39 0.41 16 50 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 51 H 0.07 1.33 7.64 -51.93 -0.40 0.93 16 52 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 403.02 15.07 6.07 6.07 Total: -1.00 -28.72 403.02 -12.32 -41.04 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -9.54 Total: 11.21 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -1.77 Total: -19.53 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: 0.38 Total: -62.25 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -1.89 Total: -45.14 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.93 Total: 14.11 kcal Atomic # 16 Polarization: 55.14 SS G_CDS: -0.65 Total: 54.49 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -28.72 -12.32 -41.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595384079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.921 kcal (2) G-P(sol) polarization free energy of solvation -28.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds