Wall clock time and date at job start Wed Apr 1 2020 04:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46901 * 2 1 4 4 C 1.46507 * 120.00131 * 274.99953 * 3 2 1 5 5 C 1.50699 * 109.46976 * 275.00038 * 4 3 2 6 6 H 1.08005 * 120.00045 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00120 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99874 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00234 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47440 * 59.99708 * 9 7 5 11 11 H 1.48498 * 109.47534 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47037 * 300.00021 * 9 7 5 13 13 S 1.65595 * 120.00234 * 95.00125 * 3 2 1 14 14 O 1.42112 * 106.40186 * 336.45662 * 13 3 2 15 15 O 1.42099 * 106.40592 * 203.53994 * 13 3 2 16 16 N 1.65602 * 107.22073 * 89.99592 * 13 3 2 17 17 C 1.46500 * 119.99755 * 65.00311 * 16 13 3 18 18 C 1.52997 * 109.47007 * 215.00078 * 17 16 13 19 19 C 1.53002 * 109.46817 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47233 * 60.00194 * 19 18 17 21 21 C 1.53002 * 109.47233 * 179.97438 * 20 19 18 22 22 C 1.53785 * 113.61112 * 277.49499 * 21 20 19 23 23 C 1.53779 * 87.07854 * 220.01691 * 22 21 20 24 24 C 1.53777 * 87.08356 * 25.43282 * 23 22 21 25 25 C 1.52997 * 109.47060 * 299.99657 * 20 19 18 26 26 C 1.52999 * 109.47317 * 59.99960 * 25 20 19 27 27 H 1.08999 * 109.46564 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47303 * 300.00284 * 1 2 3 29 29 H 1.09007 * 109.46747 * 60.00230 * 1 2 3 30 30 H 1.08999 * 109.47406 * 240.00299 * 2 1 3 31 31 H 1.08996 * 109.47222 * 119.99872 * 2 1 3 32 32 H 1.08994 * 109.47063 * 34.99723 * 4 3 2 33 33 H 1.09000 * 109.47205 * 155.00239 * 4 3 2 34 34 H 0.96998 * 119.99891 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00256 * 245.00361 * 16 13 3 36 36 H 1.09002 * 109.47092 * 335.00026 * 17 16 13 37 37 H 1.08993 * 109.47194 * 59.99623 * 18 17 16 38 38 H 1.09002 * 109.46695 * 299.99637 * 18 17 16 39 39 H 1.08992 * 109.47063 * 299.99823 * 19 18 17 40 40 H 1.09004 * 109.46733 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.47398 * 59.99826 * 20 19 18 42 42 H 1.09004 * 112.84805 * 48.79478 * 21 20 19 43 43 H 1.09001 * 113.61651 * 334.56696 * 22 21 20 44 44 H 1.09001 * 113.60934 * 105.46822 * 22 21 20 45 45 H 1.09005 * 113.61342 * 270.88516 * 23 22 21 46 46 H 1.08997 * 113.61512 * 139.98666 * 23 22 21 47 47 H 1.08995 * 113.61914 * 220.02103 * 24 23 22 48 48 H 1.09003 * 113.68973 * 89.12299 * 24 23 22 49 49 H 1.08996 * 109.47853 * 180.02562 * 25 20 19 50 50 H 1.09002 * 109.47153 * 300.00319 * 25 20 19 51 51 H 1.09000 * 109.47486 * 180.02562 * 26 25 20 52 52 H 1.09002 * 109.46716 * 60.00091 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1720 1.1112 -1.3839 7 6 3.8525 2.3607 -3.0849 8 7 3.0272 3.1848 -3.6925 9 14 5.5089 1.9637 -3.8517 10 1 5.5987 0.5037 -4.1079 11 1 5.6503 2.7002 -5.1334 12 1 6.5944 2.3711 -2.9238 13 16 2.4121 2.1203 1.4286 14 8 1.6867 1.4416 2.4448 15 8 2.3056 3.5187 1.1998 16 7 4.0144 1.8138 1.7137 17 6 5.0350 2.3525 0.8114 18 6 6.1867 1.3528 0.6892 19 6 7.2530 1.9158 -0.2527 20 6 7.7822 3.2374 0.3079 21 6 8.8489 3.8001 -0.6337 22 6 10.2435 3.1882 -0.4203 23 6 10.8100 4.6017 -0.6341 24 6 9.4480 5.1343 -0.1588 25 6 6.6305 4.2371 0.4300 26 6 5.5642 3.6743 1.3719 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3618 1.8098 -1.9453 33 1 2.0921 3.1804 -1.0756 34 1 3.2787 3.5868 -4.5387 35 1 4.2771 1.2776 2.4781 36 1 4.5968 2.5239 -0.1718 37 1 5.8097 0.4111 0.2904 38 1 6.6249 1.1815 1.6725 39 1 6.8151 2.0875 -1.2359 40 1 8.0737 1.2037 -0.3394 41 1 8.2201 3.0657 1.2912 42 1 8.5302 3.8108 -1.6761 43 1 10.4015 2.8021 0.5867 44 1 10.5329 2.4798 -1.1966 45 1 11.0288 4.8314 -1.6770 46 1 11.6333 4.8482 0.0363 47 1 9.0951 5.9970 -0.7238 48 1 9.3872 5.2809 0.9197 49 1 7.0074 5.1788 0.8289 50 1 6.1926 4.4089 -0.5533 51 1 4.7435 4.3863 1.4586 52 1 6.0021 3.5025 2.3551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595384079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:04 Heat of formation + Delta-G solvation = -107.101217 kcal Electronic energy + Delta-G solvation = -31184.674460 eV Core-core repulsion = 27309.364764 eV Total energy + Delta-G solvation = -3875.309696 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.66060 -38.70349 -38.16186 -37.63114 -36.83650 -34.87863 -34.64617 -31.65157 -31.51283 -30.15226 -28.46978 -26.46257 -25.50206 -24.91865 -23.35817 -23.30083 -22.36470 -20.96824 -20.25454 -20.06192 -18.67226 -18.51710 -18.15708 -17.38185 -16.83794 -16.52904 -16.16314 -15.84494 -15.46173 -15.09468 -15.07495 -14.80602 -14.57967 -14.16347 -14.06519 -13.82464 -13.74215 -13.57065 -13.33657 -13.23537 -13.15810 -13.07037 -12.98172 -12.95069 -12.77510 -12.67687 -12.56858 -12.32872 -12.26235 -12.12438 -11.90426 -11.80592 -11.71387 -11.53065 -11.38850 -11.20363 -11.05560 -10.77841 -10.58391 -10.45700 -10.18214 -9.76089 -8.13222 -6.24862 -0.22160 1.45468 1.46550 1.53115 2.05780 2.45405 2.66881 3.18077 3.50965 3.67996 3.75979 3.82957 3.96165 3.97935 4.02147 4.15856 4.21868 4.39882 4.43132 4.46129 4.52370 4.58836 4.68024 4.70534 4.72063 4.75112 4.80417 4.92882 4.95554 4.97685 4.99408 5.04837 5.11342 5.15793 5.16173 5.20750 5.24440 5.29143 5.33246 5.37808 5.41109 5.44008 5.55111 5.56705 5.60143 5.65969 5.77755 5.82199 5.94785 6.14107 6.35261 6.85548 7.43534 8.94296 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.004680 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.041606 B = 5980.910394 C = 7370.190678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.997 5.997 4 C 0.259 3.741 5 C -0.534 4.534 6 H 0.082 0.918 7 C 0.020 3.980 8 N -0.927 5.927 9 Si 0.930 3.070 10 H -0.271 1.271 11 H -0.300 1.300 12 H -0.228 1.228 13 S 2.796 3.204 14 O -1.011 7.011 15 O -1.017 7.017 16 N -1.109 6.109 17 C 0.126 3.874 18 C -0.108 4.108 19 C -0.126 4.126 20 C -0.065 4.065 21 C -0.115 4.115 22 C -0.130 4.130 23 C -0.139 4.139 24 C -0.136 4.136 25 C -0.109 4.109 26 C -0.130 4.130 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.018 0.982 33 H 0.015 0.985 34 H 0.262 0.738 35 H 0.420 0.580 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.056 0.944 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.037 0.963 51 H 0.044 0.956 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.819 -4.100 8.952 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.838 5.838 4 C 0.135 3.865 5 C -0.572 4.572 6 H 0.100 0.900 7 C -0.180 4.180 8 N -0.567 5.567 9 Si 0.756 3.244 10 H -0.196 1.196 11 H -0.227 1.227 12 H -0.152 1.152 13 S 2.804 3.196 14 O -0.995 6.995 15 O -1.001 7.001 16 N -0.870 5.870 17 C 0.020 3.980 18 C -0.147 4.147 19 C -0.164 4.164 20 C -0.083 4.083 21 C -0.134 4.134 22 C -0.167 4.167 23 C -0.177 4.177 24 C -0.173 4.173 25 C -0.147 4.147 26 C -0.170 4.170 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.036 0.964 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.255 0.745 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.075 0.925 48 H 0.108 0.892 49 H 0.093 0.907 50 H 0.056 0.944 51 H 0.063 0.937 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.120 -3.375 9.202 15.587 hybrid contribution 0.337 -0.159 -1.036 1.101 sum 12.456 -3.534 8.167 15.308 Atomic orbital electron populations 1.22199 0.96111 1.03199 1.01229 1.21233 0.94498 0.81330 1.03265 1.57615 1.79435 1.23973 1.22729 1.18753 0.96796 0.90697 0.80244 1.21774 1.02320 1.27436 1.05702 0.90017 1.25702 1.00286 0.94606 0.97439 1.70070 1.37999 1.31214 1.17416 0.86117 0.81870 0.78410 0.78009 1.19614 1.22679 1.15232 1.01227 0.73330 0.72839 0.72165 1.93519 1.71584 1.76174 1.58188 1.93529 1.86787 1.33652 1.86103 1.55675 1.24074 1.68355 1.38870 1.21386 0.89344 0.93338 0.93969 1.21676 0.94528 0.97617 1.00891 1.21789 0.98147 0.97315 0.99127 1.21099 0.94209 0.93873 0.99146 1.22600 0.94624 0.97371 0.98796 1.22938 0.94757 0.96619 1.02380 1.22792 0.96919 0.96485 1.01464 1.22934 0.96470 0.96402 1.01511 1.21487 0.95449 0.99048 0.98711 1.21990 0.98416 0.96580 0.99996 0.89056 0.93583 0.93442 0.90040 0.89646 0.96384 0.96692 0.92864 0.74514 0.88202 0.91682 0.89661 0.93007 0.90316 0.89427 0.91524 0.88987 0.91878 0.90647 0.90433 0.92466 0.89238 0.90715 0.94388 0.93695 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.21 10.24 71.98 0.74 -4.48 16 2 C 0.12 4.09 6.06 86.38 0.52 4.61 16 3 N -1.00 -40.60 2.82 -519.84 -1.47 -42.07 16 4 C 0.26 12.84 5.31 85.63 0.45 13.29 16 5 C -0.53 -26.37 6.91 25.60 0.18 -26.19 16 6 H 0.08 3.74 6.95 -2.91 -0.02 3.72 16 7 C 0.02 1.02 5.46 84.65 0.46 1.48 16 8 N -0.93 -52.89 13.29 21.45 0.28 -52.61 16 9 Si 0.93 39.64 28.99 68.60 1.99 41.63 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.23 -8.70 4.91 99.48 0.49 -8.21 16 13 S 2.80 110.94 6.01 -56.49 -0.34 110.60 16 14 O -1.01 -40.53 17.11 -128.00 -2.19 -42.72 16 15 O -1.02 -48.67 15.95 -128.00 -2.04 -50.71 16 16 N -1.11 -34.98 5.53 -169.38 -0.94 -35.92 16 17 C 0.13 4.15 2.39 44.99 0.11 4.26 16 18 C -0.11 -2.85 5.45 30.59 0.17 -2.68 16 19 C -0.13 -3.35 5.20 30.60 0.16 -3.19 16 20 C -0.07 -1.55 1.94 -10.79 -0.02 -1.57 16 21 C -0.12 -2.61 3.13 -10.27 -0.03 -2.65 16 22 C -0.13 -2.32 7.63 31.12 0.24 -2.08 16 23 C -0.14 -2.35 8.08 31.12 0.25 -2.10 16 24 C -0.14 -2.65 6.68 31.12 0.21 -2.44 16 25 C -0.11 -3.14 5.01 30.59 0.15 -2.98 16 26 C -0.13 -4.04 5.53 30.60 0.17 -3.88 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.08 2.69 8.11 -2.39 -0.02 2.67 16 31 H 0.09 2.46 7.61 -2.39 -0.02 2.44 16 32 H 0.02 0.95 8.11 -2.39 -0.02 0.93 16 33 H 0.02 0.85 6.91 -2.39 -0.02 0.83 16 34 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 35 H 0.42 10.27 8.84 -96.75 -0.85 9.41 16 36 H 0.10 4.13 4.25 -2.39 -0.01 4.12 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 1.71 5.19 -2.39 -0.01 1.69 16 40 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.09 1.74 7.94 -2.39 -0.02 1.72 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.09 1.42 7.96 -2.39 -0.02 1.40 16 44 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.09 1.57 8.10 -2.39 -0.02 1.55 16 49 H 0.07 1.89 7.45 -2.39 -0.02 1.88 16 50 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.04 1.64 7.64 -2.39 -0.02 1.62 16 52 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -64.80 403.02 -1.13 -65.93 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: -0.19 Total: 36.44 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 3.75 Total: -30.59 kcal Atomic # 7 Polarization: -128.47 SS G_CDS: -2.12 Total: -130.59 kcal Atomic # 8 Polarization: -89.19 SS G_CDS: -4.23 Total: -93.42 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 1.99 Total: 41.63 kcal Atomic # 16 Polarization: 110.94 SS G_CDS: -0.34 Total: 110.60 kcal Total: -64.80 -1.13 -65.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595384079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.167 kcal (2) G-P(sol) polarization free energy of solvation -64.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds