Wall clock time and date at job start Wed Apr 1 2020 04:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.46887 * 2 1 4 4 C 1.46497 * 120.00338 * 274.47125 * 3 2 1 5 5 C 1.50698 * 109.47110 * 270.00269 * 4 3 2 6 6 H 1.07995 * 120.00087 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99562 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00239 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99538 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47266 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47122 * 119.99533 * 9 7 5 12 12 H 1.48498 * 109.46596 * 239.99770 * 9 7 5 13 13 C 1.34784 * 119.99719 * 94.47164 * 3 2 1 14 14 O 1.21280 * 119.99877 * 184.83003 * 13 3 2 15 15 C 1.50696 * 119.99981 * 4.83352 * 13 3 2 16 16 H 1.09007 * 109.47145 * 0.97906 * 15 13 3 17 17 C 1.53003 * 109.47096 * 240.98345 * 15 13 3 18 18 C 1.53004 * 109.47140 * 65.22728 * 17 15 13 19 19 C 1.52994 * 109.47274 * 185.23444 * 17 15 13 20 20 N 1.46492 * 109.47245 * 120.98387 * 15 13 3 21 21 C 1.46741 * 125.62106 * 243.67662 * 20 15 13 22 22 C 1.50831 * 106.24935 * 180.02562 * 21 20 15 23 23 C 1.37576 * 133.23645 * 179.97438 * 22 21 20 24 24 C 1.38474 * 119.95395 * 180.02562 * 23 22 21 25 25 C 1.38384 * 120.18885 * 0.02562 * 24 23 22 26 26 C 1.37941 * 120.32223 * 359.97438 * 25 24 23 27 27 C 1.39625 * 119.82255 * 0.02562 * 26 25 24 28 28 C 1.34418 * 125.62835 * 63.65308 * 20 15 13 29 29 O 1.21549 * 124.85360 * 359.97438 * 28 20 15 30 30 H 1.09005 * 109.47056 * 186.89754 * 1 2 3 31 31 H 1.09001 * 109.46961 * 306.89581 * 1 2 3 32 32 H 1.09004 * 109.47080 * 66.89995 * 1 2 3 33 33 H 1.09003 * 109.47605 * 240.00683 * 2 1 3 34 34 H 1.08996 * 109.47165 * 120.00114 * 2 1 3 35 35 H 1.09005 * 109.47000 * 30.00072 * 4 3 2 36 36 H 1.09000 * 109.47445 * 149.99942 * 4 3 2 37 37 H 0.97007 * 119.99626 * 180.02562 * 8 7 5 38 38 H 1.09005 * 109.46932 * 305.23233 * 17 15 13 39 39 H 1.09006 * 109.46480 * 57.08646 * 18 17 15 40 40 H 1.09006 * 109.46662 * 177.07622 * 18 17 15 41 41 H 1.08994 * 109.47564 * 297.07645 * 18 17 15 42 42 H 1.09007 * 109.47141 * 185.16756 * 19 17 15 43 43 H 1.08997 * 109.47428 * 305.16418 * 19 17 15 44 44 H 1.08995 * 109.47206 * 65.16414 * 19 17 15 45 45 H 1.08994 * 110.12155 * 60.79997 * 21 20 15 46 46 H 1.08994 * 110.07356 * 299.19006 * 21 20 15 47 47 H 1.07999 * 120.02408 * 359.97438 * 23 22 21 48 48 H 1.08002 * 119.90402 * 179.97438 * 24 23 22 49 49 H 1.07995 * 119.83631 * 180.02562 * 25 24 23 50 50 H 1.08000 * 120.08538 * 179.72359 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1692 2.1049 -1.2648 5 6 3.5564 1.8809 -1.8093 6 1 4.2558 1.2618 -1.2672 7 6 3.9329 2.4673 -2.9990 8 7 3.0814 3.2216 -3.6589 9 14 5.6523 2.1890 -3.6743 10 1 6.4105 1.3079 -2.7502 11 1 5.5615 1.5454 -5.0095 12 1 6.3518 3.4929 -3.7997 13 6 2.3287 1.9863 1.1637 14 8 2.6488 3.1560 1.1725 15 6 2.2780 1.2092 2.4539 16 1 1.9894 0.1788 2.2463 17 6 1.2522 1.8467 3.3933 18 6 -0.1468 1.7102 2.7890 19 6 1.2935 1.1393 4.7492 20 7 3.5986 1.2283 3.0877 21 6 4.4472 0.0560 3.3302 22 6 5.6969 0.5708 3.9998 23 6 6.8392 -0.0413 4.4614 24 6 7.8408 0.7151 5.0464 25 6 7.6962 2.0859 5.1688 26 6 6.5548 2.7095 4.7093 27 6 5.5405 1.9536 4.1183 28 6 4.2330 2.3226 3.5426 29 8 3.7923 3.4540 3.4883 30 1 -0.3633 -1.0203 0.1234 31 1 -0.3633 0.6170 0.8219 32 1 -0.3633 0.4032 -0.9453 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.4340 1.7400 -1.9821 36 1 2.0132 3.1702 -1.0948 37 1 3.3463 3.6337 -4.4961 38 1 1.4888 2.9024 3.5269 39 1 -0.3628 0.6573 2.6073 40 1 -0.8831 2.1178 3.4817 41 1 -0.1911 2.2580 1.8478 42 1 0.5016 1.5310 5.3877 43 1 1.1478 0.0687 4.6051 44 1 2.2604 1.3140 5.2209 45 1 4.6994 -0.4261 2.3858 46 1 3.9344 -0.6479 3.9855 47 1 6.9543 -1.1111 4.3683 48 1 8.7370 0.2336 5.4089 49 1 8.4811 2.6703 5.6256 50 1 6.4440 3.7790 4.8109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596889377.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:44 Heat of formation + Delta-G solvation = -43.447564 kcal Electronic energy + Delta-G solvation = -31983.787896 eV Core-core repulsion = 27975.794478 eV Total energy + Delta-G solvation = -4007.993418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.42982 -40.82771 -39.02164 -37.49142 -36.98522 -36.20199 -34.88945 -32.26354 -32.00835 -31.64750 -29.79408 -28.21825 -27.96175 -27.58511 -25.16385 -24.23552 -23.82145 -22.75145 -21.70050 -21.11641 -19.69183 -18.70656 -18.49611 -17.91151 -17.53815 -17.18250 -16.87996 -16.81227 -16.19540 -15.86878 -15.46552 -15.38667 -15.06297 -14.92016 -14.69119 -14.59253 -14.32626 -14.14156 -14.04835 -13.88162 -13.68555 -13.52503 -13.35865 -13.28595 -13.17001 -13.02702 -12.75974 -12.69951 -12.54409 -12.24285 -12.19670 -12.05157 -12.02008 -11.78227 -11.75653 -11.64531 -10.94338 -10.70799 -10.64275 -10.04467 -9.86684 -9.56253 -9.44379 -8.27092 -6.42277 -0.17909 0.34772 1.28571 1.32023 1.34506 1.44571 1.85748 2.11440 2.25473 2.41950 2.84394 3.02114 3.11927 3.39592 3.58486 3.67025 3.73487 3.93049 4.07472 4.17131 4.21248 4.23994 4.33933 4.41441 4.45504 4.49544 4.54902 4.58941 4.65449 4.75103 4.78152 4.85968 4.90793 4.91617 4.99536 5.00441 5.05134 5.12295 5.17117 5.19253 5.31180 5.36153 5.37913 5.45629 5.47711 5.53117 5.61162 5.82901 5.91444 5.99504 6.02563 6.65460 6.75984 7.14295 7.24182 7.48318 8.80279 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008650 B = 0.004731 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.178580 B = 5916.690210 C = 7979.090750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.094 3.906 3 N -0.599 5.599 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.266 1.266 11 H -0.262 1.262 12 H -0.286 1.286 13 C 0.483 3.517 14 O -0.577 6.577 15 C 0.163 3.837 16 H 0.151 0.849 17 C -0.102 4.102 18 C -0.144 4.144 19 C -0.125 4.125 20 N -0.605 5.605 21 C 0.136 3.864 22 C -0.081 4.081 23 C -0.097 4.097 24 C -0.080 4.080 25 C -0.127 4.127 26 C -0.074 4.074 27 C -0.193 4.193 28 C 0.535 3.465 29 O -0.553 6.553 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.024 0.976 36 H -0.015 1.015 37 H 0.267 0.733 38 H 0.041 0.959 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.026 0.974 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.037 0.963 45 H 0.106 0.894 46 H 0.143 0.857 47 H 0.171 0.829 48 H 0.173 0.827 49 H 0.157 0.843 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 -18.117 20.886 27.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.028 4.028 3 N -0.331 5.331 4 C 0.144 3.856 5 C -0.578 4.578 6 H 0.069 0.931 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.190 1.190 11 H -0.187 1.187 12 H -0.212 1.212 13 C 0.270 3.730 14 O -0.455 6.455 15 C 0.058 3.942 16 H 0.168 0.832 17 C -0.122 4.122 18 C -0.201 4.201 19 C -0.183 4.183 20 N -0.339 5.339 21 C 0.015 3.985 22 C -0.082 4.082 23 C -0.114 4.114 24 C -0.098 4.098 25 C -0.145 4.145 26 C -0.093 4.093 27 C -0.197 4.197 28 C 0.325 3.675 29 O -0.431 6.431 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.042 0.958 36 H 0.004 0.996 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.056 0.944 45 H 0.124 0.876 46 H 0.160 0.840 47 H 0.189 0.811 48 H 0.190 0.810 49 H 0.174 0.826 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.636 -16.830 20.616 26.744 hybrid contribution 0.618 1.497 -1.274 2.061 sum 3.254 -15.333 19.342 24.896 Atomic orbital electron populations 1.22455 0.94425 1.04285 1.02303 1.21896 0.95691 0.81190 1.03980 1.48333 1.63518 1.15221 1.06073 1.18632 0.95763 0.90725 0.80517 1.21689 0.99144 1.30756 1.06234 0.93093 1.25884 1.01876 0.94412 0.97079 1.70068 1.37142 1.32967 1.16636 0.85389 0.78907 0.77946 0.78712 1.18971 1.18707 1.21199 1.21583 0.77320 0.87689 0.86456 1.90745 1.48391 1.19177 1.87203 1.21274 0.82130 1.02232 0.88533 0.83170 1.21355 0.94520 1.00002 0.96352 1.21983 0.94512 1.03703 0.99892 1.21666 1.01389 1.01610 0.93591 1.47799 1.17951 1.08919 1.59202 1.20893 0.87886 0.87502 1.02212 1.20718 0.96682 0.92973 0.97849 1.20772 0.90654 1.02232 0.97779 1.21834 0.99331 0.93195 0.95423 1.21443 0.96685 0.96237 1.00150 1.21028 0.92822 0.99832 0.95591 1.20530 0.96050 0.97271 1.05829 1.19005 0.85820 0.84512 0.78178 1.90781 1.71983 1.22856 1.57474 0.87727 0.91308 0.94472 0.90676 0.87624 0.95771 0.99637 0.92418 0.94005 0.88400 0.90405 0.95455 0.91259 0.89039 0.94413 0.87576 0.83998 0.81143 0.80994 0.82580 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.24 10.24 71.98 0.74 -3.50 16 2 C 0.09 2.78 6.00 86.38 0.52 3.29 16 3 N -0.60 -26.47 2.46 -826.14 -2.03 -28.50 16 4 C 0.27 15.12 5.22 85.63 0.45 15.56 16 5 C -0.54 -32.48 9.39 25.60 0.24 -32.24 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -58.52 13.29 21.45 0.28 -58.24 16 9 Si 0.97 46.60 29.54 68.60 2.03 48.62 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 13 C 0.48 22.13 5.68 87.65 0.50 22.63 16 14 O -0.58 -34.71 14.27 16.16 0.23 -34.48 16 15 C 0.16 5.17 2.05 44.25 0.09 5.26 16 16 H 0.15 3.23 5.17 -2.38 -0.01 3.22 16 17 C -0.10 -3.05 2.20 -10.79 -0.02 -3.07 16 18 C -0.14 -3.54 7.66 71.98 0.55 -2.99 16 19 C -0.13 -2.58 8.88 71.98 0.64 -1.94 16 20 N -0.61 -19.20 2.03 -809.80 -1.65 -20.85 16 21 C 0.14 2.71 7.36 85.63 0.63 3.34 16 22 C -0.08 -1.78 6.38 -19.63 -0.13 -1.90 16 23 C -0.10 -1.37 10.03 22.17 0.22 -1.14 16 24 C -0.08 -1.04 10.05 22.36 0.22 -0.81 16 25 C -0.13 -2.29 10.02 22.23 0.22 -2.06 16 26 C -0.07 -2.02 10.10 22.53 0.23 -1.80 16 27 C -0.19 -6.10 6.26 -20.14 -0.13 -6.23 16 28 C 0.54 21.54 6.87 86.76 0.60 22.13 16 29 O -0.55 -28.49 14.69 15.32 0.23 -28.27 16 30 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.07 1.62 4.08 -2.39 -0.01 1.61 16 32 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.07 2.34 8.11 -2.39 -0.02 2.32 16 34 H 0.11 2.18 5.47 -2.39 -0.01 2.17 16 35 H 0.02 1.39 8.07 -2.38 -0.02 1.37 16 36 H -0.01 -0.98 7.36 -2.39 -0.02 -1.00 16 37 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 38 H 0.04 1.73 6.71 -2.38 -0.02 1.72 16 39 H 0.10 1.66 6.83 -2.38 -0.02 1.64 16 40 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.03 0.86 6.74 -2.39 -0.02 0.84 16 42 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.04 0.90 7.32 -2.39 -0.02 0.88 16 45 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 48 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 49 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 50 H 0.11 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -98.44 398.65 6.06 -92.38 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.94 Total: 13.97 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 6.03 Total: 15.37 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -3.39 Total: -107.59 kcal Atomic # 8 Polarization: -63.21 SS G_CDS: 0.46 Total: -62.75 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -98.44 6.06 -92.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596889377.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.933 kcal (2) G-P(sol) polarization free energy of solvation -98.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds