Wall clock time and date at job start Wed Apr 1 2020 03:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 O 1.42903 * 109.47358 * 120.00571 * 2 1 3 5 5 C 1.35893 * 116.99778 * 275.65674 * 4 2 1 6 6 C 1.38744 * 120.09680 * 4.10983 * 5 4 2 7 7 C 1.38006 * 119.88171 * 180.02562 * 6 5 4 8 8 C 1.38547 * 120.28782 * 359.97438 * 7 6 5 9 9 C 1.38256 * 119.93929 * 0.02990 * 8 7 6 10 10 C 1.38418 * 119.90489 * 359.97438 * 9 8 7 11 11 C 1.51383 * 109.75349 * 180.02562 * 9 8 7 12 12 C 1.54344 * 105.17048 * 342.81047 * 11 9 8 13 13 C 1.51695 * 130.23687 * 179.85880 * 8 7 6 14 14 C 1.50705 * 109.47238 * 240.00366 * 2 1 3 15 15 O 1.21280 * 120.00329 * 245.00137 * 14 2 1 16 16 N 1.34777 * 119.99874 * 64.99759 * 14 2 1 17 17 C 1.46971 * 120.59249 * 359.72462 * 16 14 2 18 18 C 1.53813 * 108.39521 * 124.75582 * 17 16 14 19 19 N 1.46964 * 108.58286 * 49.64001 * 18 17 16 20 20 C 1.36933 * 120.59564 * 124.66374 * 19 18 17 21 21 H 1.08002 * 119.99622 * 213.72765 * 20 19 18 22 22 C 1.38812 * 120.00132 * 33.73493 * 20 19 18 23 23 N 1.31622 * 119.99653 * 17.16665 * 22 20 19 24 24 Si 1.86796 * 120.00056 * 197.16809 * 22 20 19 25 25 H 1.48500 * 109.47346 * 59.99694 * 24 22 20 26 26 H 1.48502 * 109.47150 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47022 * 299.99737 * 24 22 20 28 28 C 1.46965 * 118.80743 * 304.64274 * 19 18 17 29 29 C 1.46964 * 120.59765 * 180.02562 * 16 14 2 30 30 H 1.08997 * 109.47072 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47120 * 299.99716 * 1 2 3 32 32 H 1.09003 * 109.46830 * 59.99717 * 1 2 3 33 33 H 1.08005 * 120.05693 * 0.02823 * 6 5 4 34 34 H 1.07996 * 119.85233 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.91369 * 180.02562 * 10 9 8 36 36 H 1.08999 * 110.29975 * 223.89109 * 11 9 8 37 37 H 1.08996 * 110.30021 * 101.73452 * 11 9 8 38 38 H 1.08996 * 110.81678 * 144.58876 * 12 11 9 39 39 H 1.09002 * 110.81923 * 267.94121 * 12 11 9 40 40 H 1.08999 * 110.25436 * 78.27921 * 13 8 7 41 41 H 1.08998 * 110.49028 * 316.03208 * 13 8 7 42 42 H 1.08999 * 109.60734 * 244.53805 * 17 16 14 43 43 H 1.08994 * 109.60935 * 5.05110 * 17 16 14 44 44 H 1.09001 * 109.74269 * 289.84611 * 18 17 16 45 45 H 1.09003 * 109.53091 * 169.30301 * 18 17 16 46 46 H 0.97003 * 119.99248 * 180.02562 * 23 22 20 47 47 H 1.08993 * 109.61189 * 295.48275 * 28 19 18 48 48 H 1.09004 * 109.74957 * 175.05365 * 28 19 18 49 49 H 1.09003 * 109.60697 * 354.95115 * 29 16 14 50 50 H 1.09001 * 109.61170 * 115.46010 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.0995 0.0589 2.3074 6 6 1.6603 1.3749 2.3268 7 6 1.7575 2.1151 3.4875 8 6 2.2914 1.5497 4.6342 9 6 2.7298 0.2386 4.6173 10 6 2.6337 -0.5063 3.4546 11 6 3.2648 -0.1396 5.9820 12 6 3.5100 1.2015 6.7056 13 6 2.5053 2.1460 6.0125 14 6 2.0324 -0.7103 -1.2305 15 8 2.6530 -1.7466 -1.1217 16 7 1.7919 -0.1940 -2.4520 17 6 1.0359 1.0577 -2.5994 18 6 1.8886 2.0469 -3.4120 19 7 2.3723 1.3652 -4.6208 20 6 2.1280 1.8898 -5.8618 21 1 1.9674 1.2326 -6.7037 22 6 2.0868 3.2661 -6.0378 23 7 2.6033 4.0619 -5.1254 24 14 1.2984 3.9887 -7.5693 25 1 -0.1266 3.5759 -7.6343 26 1 1.3832 5.4704 -7.5176 27 1 2.0124 3.4943 -8.7739 28 6 3.1234 0.1105 -4.4736 29 6 2.2751 -0.8760 -3.6608 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.2431 1.8192 1.4352 34 1 1.4151 3.1392 3.5023 35 1 2.9758 -1.5306 3.4414 36 1 4.1992 -0.6918 5.8822 37 1 2.5297 -0.7335 6.5251 38 1 3.2891 1.1138 7.7693 39 1 4.5333 1.5438 6.5509 40 1 1.5655 2.1684 6.5641 41 1 2.9223 3.1499 5.9334 42 1 0.1006 0.8606 -3.1232 43 1 0.8258 1.4762 -1.6152 44 1 2.7377 2.3784 -2.8144 45 1 1.2799 2.9056 -3.6952 46 1 2.5741 5.0236 -5.2483 47 1 4.0604 0.3042 -3.9516 48 1 3.3328 -0.3109 -5.4569 49 1 2.8836 -1.7350 -3.3777 50 1 1.4258 -1.2073 -4.2583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610397155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:52 Heat of formation + Delta-G solvation = -30.339906 kcal Electronic energy + Delta-G solvation = -30344.337967 eV Core-core repulsion = 26336.912940 eV Total energy + Delta-G solvation = -4007.425028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.95341 -41.01111 -39.56815 -38.37427 -35.83514 -35.71781 -33.94074 -32.80166 -32.11801 -31.46313 -29.46473 -28.78534 -28.02830 -26.22642 -24.89717 -24.52149 -23.81564 -22.58889 -21.67516 -21.41010 -20.27390 -19.26648 -18.65584 -17.74682 -17.44736 -16.84936 -16.69754 -16.66184 -16.45551 -15.96074 -15.82595 -15.57583 -15.47122 -15.22459 -15.08884 -14.80397 -14.45093 -14.17642 -13.95572 -13.70096 -13.51477 -13.37499 -13.31401 -13.16097 -12.90264 -12.75508 -12.62543 -12.53668 -12.47519 -12.27175 -12.10560 -12.06163 -12.00904 -11.91303 -11.69805 -11.58843 -11.41147 -10.81345 -10.59094 -9.92501 -9.79024 -9.00097 -8.62598 -7.90822 -5.43911 0.32141 0.41145 1.38042 1.46375 1.50558 1.51322 1.58462 2.37146 2.51409 2.71609 3.21415 3.24991 3.52786 3.57472 3.63907 3.66841 3.80074 3.92348 4.11666 4.16787 4.17530 4.21867 4.29365 4.35616 4.38084 4.40852 4.48318 4.56588 4.60263 4.65166 4.68382 4.74010 4.77223 4.88004 4.97428 5.00887 5.03588 5.06504 5.08541 5.16423 5.24157 5.32112 5.36920 5.42327 5.45191 5.51747 5.64946 5.67315 5.78393 6.26789 6.36822 6.39383 6.98375 7.10182 7.75116 8.32773 9.14142 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017320 B = 0.002375 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.209518 B =11786.778833 C =12763.979590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.073 3.927 3 H 0.109 0.891 4 O -0.310 6.310 5 C 0.110 3.890 6 C -0.215 4.215 7 C -0.071 4.071 8 C -0.145 4.145 9 C -0.069 4.069 10 C -0.160 4.160 11 C -0.083 4.083 12 C -0.116 4.116 13 C -0.076 4.076 14 C 0.513 3.487 15 O -0.574 6.574 16 N -0.592 5.592 17 C 0.087 3.913 18 C 0.165 3.835 19 N -0.606 5.606 20 C -0.272 4.272 21 H 0.066 0.934 22 C -0.038 4.038 23 N -0.930 5.930 24 Si 0.968 3.032 25 H -0.273 1.273 26 H -0.295 1.295 27 H -0.279 1.279 28 C 0.132 3.868 29 C 0.106 3.894 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.001 0.999 45 H 0.070 0.930 46 H 0.253 0.747 47 H 0.005 0.995 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.323 -3.464 22.323 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.013 3.987 3 H 0.126 0.874 4 O -0.224 6.224 5 C 0.065 3.935 6 C -0.233 4.233 7 C -0.089 4.089 8 C -0.146 4.146 9 C -0.069 4.069 10 C -0.179 4.179 11 C -0.120 4.120 12 C -0.154 4.154 13 C -0.112 4.112 14 C 0.301 3.699 15 O -0.454 6.454 16 N -0.325 5.325 17 C -0.036 4.036 18 C 0.038 3.962 19 N -0.329 5.329 20 C -0.401 4.401 21 H 0.084 0.916 22 C -0.235 4.235 23 N -0.574 5.574 24 Si 0.795 3.205 25 H -0.199 1.199 26 H -0.221 1.221 27 H -0.205 1.205 28 C 0.006 3.994 29 C -0.017 4.017 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.141 0.859 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.127 0.873 44 H 0.019 0.981 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.023 0.977 48 H 0.093 0.907 49 H 0.102 0.898 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.930 -4.034 22.321 23.212 hybrid contribution 0.056 0.584 -1.431 1.546 sum -4.874 -3.450 20.890 21.727 Atomic orbital electron populations 1.22499 0.90201 1.04633 1.05826 1.22206 0.97465 0.96657 0.82361 0.87371 1.86135 1.81647 1.38358 1.16255 1.19090 0.96980 0.91260 0.86174 1.21391 1.07461 0.93555 1.00943 1.20722 0.97023 1.00355 0.90791 1.21015 1.01399 0.95339 0.96815 1.20688 0.97048 0.94353 0.94827 1.19950 1.05591 1.01362 0.90949 1.21177 1.01473 0.99240 0.90115 1.22326 0.99509 0.93166 1.00372 1.21112 1.00479 0.99533 0.90117 1.20561 0.79489 0.84995 0.84874 1.90652 1.42555 1.25557 1.86660 1.47990 1.54386 1.25122 1.05026 1.22882 0.95220 0.83569 1.01978 1.21050 0.94917 0.93745 0.86460 1.44172 1.61782 1.24208 1.02753 1.19388 1.43129 0.89964 0.87669 0.91625 1.25918 0.99732 0.97372 1.00462 1.70166 1.46420 1.03146 1.37637 0.85360 0.78989 0.76558 0.79574 1.19872 1.22093 1.20478 1.21370 0.92313 0.87420 0.98345 1.22095 0.99212 0.95396 0.85017 0.91354 0.88796 0.87967 0.83852 0.83598 0.85923 0.90186 0.88831 0.88345 0.90877 0.89186 0.89898 0.89737 0.87293 0.98117 0.91145 0.93800 0.97709 0.90708 0.89818 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 8.74 71.98 0.63 -3.08 16 2 C 0.07 2.06 1.81 29.85 0.05 2.12 16 3 H 0.11 2.82 5.62 -2.39 -0.01 2.81 16 4 O -0.31 -10.03 9.34 -73.36 -0.69 -10.72 16 5 C 0.11 3.06 6.59 22.48 0.15 3.21 16 6 C -0.22 -4.98 8.23 22.34 0.18 -4.79 16 7 C -0.07 -1.41 10.03 22.29 0.22 -1.19 16 8 C -0.15 -2.80 6.15 -19.47 -0.12 -2.92 16 9 C -0.07 -1.46 6.13 -19.60 -0.12 -1.58 16 10 C -0.16 -4.16 9.98 22.40 0.22 -3.94 16 11 C -0.08 -1.18 6.77 30.52 0.21 -0.97 16 12 C -0.12 -1.23 7.07 31.50 0.22 -1.01 16 13 C -0.08 -0.94 6.79 30.62 0.21 -0.73 16 14 C 0.51 18.34 7.12 87.66 0.62 18.97 16 15 O -0.57 -24.91 15.91 15.96 0.25 -24.65 16 16 N -0.59 -20.56 2.94 -817.05 -2.40 -22.96 16 17 C 0.09 2.77 5.22 86.56 0.45 3.22 16 18 C 0.16 7.16 5.50 86.57 0.48 7.64 16 19 N -0.61 -28.92 2.93 -697.26 -2.04 -30.97 16 20 C -0.27 -14.12 9.51 84.03 0.80 -13.32 16 21 H 0.07 3.34 7.89 -2.91 -0.02 3.31 16 22 C -0.04 -2.00 4.86 84.86 0.41 -1.59 16 23 N -0.93 -52.10 11.61 21.65 0.25 -51.85 16 24 Si 0.97 42.37 29.59 68.60 2.03 44.40 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 26 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 27 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 28 C 0.13 5.51 6.67 86.43 0.58 6.09 16 29 C 0.11 3.82 6.59 86.43 0.57 4.39 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.65 6.94 -2.39 -0.02 1.63 16 32 H 0.10 1.89 5.37 -2.39 -0.01 1.87 16 33 H 0.14 2.86 5.46 -2.91 -0.02 2.84 16 34 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 35 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.11 2.71 4.56 -2.39 -0.01 2.69 16 44 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.07 3.35 6.43 -2.39 -0.02 3.34 16 46 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 47 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 48 H 0.07 2.98 7.94 -2.39 -0.02 2.96 16 49 H 0.08 3.02 6.99 -2.39 -0.02 3.00 16 50 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -69.89 388.59 4.12 -65.77 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.95 Total: 20.44 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 5.77 Total: 10.52 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -4.20 Total: -105.77 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.43 Total: -35.37 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -69.89 4.12 -65.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610397155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.433 kcal (2) G-P(sol) polarization free energy of solvation -69.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds