Wall clock time and date at job start Wed Apr 1 2020 04:30:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46907 * 109.47119 * 2 1
4 4 C 1.46900 * 110.99774 * 75.56822 * 3 2 1
5 5 C 1.50701 * 109.46986 * 199.66295 * 4 3 2
6 6 H 1.08001 * 119.99935 * 355.13436 * 5 4 3
7 7 C 1.37873 * 120.00379 * 175.13588 * 5 4 3
8 8 N 1.31522 * 119.99873 * 359.97438 * 7 5 4
9 9 Si 1.86799 * 120.00325 * 180.02562 * 7 5 4
10 10 H 1.48503 * 109.47051 * 180.02562 * 9 7 5
11 11 H 1.48501 * 109.46905 * 299.99493 * 9 7 5
12 12 H 1.48493 * 109.47086 * 59.99570 * 9 7 5
13 13 C 1.46901 * 111.00015 * 199.52273 * 3 2 1
14 14 N 1.46496 * 109.47220 * 81.04402 * 13 3 2
15 15 C 1.33873 * 122.75917 * 269.71117 * 14 13 3
16 16 O 1.21217 * 125.40503 * 359.97438 * 15 14 13
17 17 C 1.51323 * 109.20207 * 179.84401 * 15 14 13
18 18 C 1.54227 * 103.55627 * 0.38329 * 17 15 14
19 19 C 1.52999 * 110.60839 * 241.26580 * 18 17 15
20 20 C 1.50703 * 110.60748 * 118.29400 * 18 17 15
21 21 C 1.38231 * 119.99682 * 120.52483 * 20 18 17
22 22 C 1.38241 * 119.99922 * 179.74592 * 21 20 18
23 23 C 1.38244 * 119.99339 * 0.53066 * 22 21 20
24 24 C 1.50703 * 119.99513 * 179.76818 * 23 22 21
25 25 C 1.38230 * 120.00155 * 359.74448 * 23 22 21
26 26 C 1.38228 * 119.99989 * 300.80237 * 20 18 17
27 27 C 1.33879 * 122.76161 * 89.99726 * 14 13 3
28 28 O 1.21230 * 125.39423 * 0.02562 * 27 14 13
29 29 H 1.08997 * 109.47724 * 304.83203 * 1 2 3
30 30 H 1.09001 * 109.46825 * 64.83113 * 1 2 3
31 31 H 1.09004 * 109.46899 * 184.83076 * 1 2 3
32 32 H 1.08998 * 109.47798 * 239.99963 * 2 1 3
33 33 H 1.09004 * 109.47024 * 119.99609 * 2 1 3
34 34 H 1.08998 * 109.47319 * 79.66303 * 4 3 2
35 35 H 1.09005 * 109.47309 * 319.65824 * 4 3 2
36 36 H 0.97004 * 119.99389 * 0.02562 * 8 7 5
37 37 H 1.08996 * 109.46685 * 201.05029 * 13 3 2
38 38 H 1.09003 * 109.46580 * 321.04212 * 13 3 2
39 39 H 1.09000 * 110.79689 * 241.77650 * 17 15 14
40 40 H 1.09003 * 110.54814 * 118.87428 * 17 15 14
41 41 H 1.09000 * 109.46989 * 175.59047 * 19 18 17
42 42 H 1.09005 * 109.46725 * 295.58445 * 19 18 17
43 43 H 1.08998 * 109.47139 * 55.58500 * 19 18 17
44 44 H 1.08000 * 120.00531 * 0.02562 * 21 20 18
45 45 H 1.07995 * 120.00218 * 180.30396 * 22 21 20
46 46 H 1.09002 * 109.47111 * 269.97885 * 24 23 22
47 47 H 1.09004 * 109.46909 * 29.98072 * 24 23 22
48 48 H 1.09000 * 109.47023 * 149.97772 * 24 23 22
49 49 H 1.08002 * 119.99396 * 179.97438 * 25 23 22
50 50 H 1.08007 * 120.00496 * 0.02562 * 26 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.8729 1.9953 1.3282
5 6 1.9152 3.4961 1.1989
6 1 2.1171 3.9500 0.2399
7 6 1.6961 4.2899 2.3047
8 7 1.4497 3.7372 3.4724
9 14 1.7479 6.1502 2.1443
10 1 1.4829 6.7688 3.4681
11 1 3.0889 6.5684 1.6626
12 1 0.7137 6.5924 1.1747
13 6 3.4138 1.4505 -0.4583
14 7 3.4490 1.4108 -1.9223
15 6 3.5353 0.2679 -2.6141
16 8 3.5939 -0.8424 -2.1314
17 6 3.5450 0.5817 -4.0944
18 6 3.4583 2.1209 -4.1383
19 6 2.1884 2.5683 -4.8650
20 6 4.6818 2.7025 -4.7985
21 6 4.5511 3.4768 -5.9362
22 6 5.6729 4.0146 -6.5388
23 6 6.9264 3.7691 -6.0100
24 6 8.1498 4.3511 -6.6700
25 6 7.0575 2.9901 -4.8756
26 6 5.9351 2.4570 -4.2697
27 6 3.4030 2.5148 -2.6783
28 8 3.3293 3.6500 -2.2595
29 1 -0.3634 0.5869 0.8435
30 1 -0.3633 0.4371 -0.9301
31 1 -0.3633 -1.0241 0.0865
32 1 1.8934 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8901
34 1 2.6867 1.6630 1.9726
35 1 0.9194 1.6948 1.7627
36 1 1.4225 2.7711 3.5556
37 1 3.8679 2.3777 -0.1089
38 1 3.9679 0.6013 -0.0583
39 1 2.6835 0.1347 -4.5904
40 1 4.4718 0.2365 -4.5526
41 1 2.1058 3.6541 -4.8171
42 1 2.2362 2.2531 -5.9074
43 1 1.3186 2.1163 -4.3883
44 1 3.5722 3.6652 -6.3517
45 1 5.5704 4.6236 -7.4248
46 1 8.5280 3.6516 -7.4155
47 1 7.8885 5.2921 -7.1542
48 1 8.9178 4.5307 -5.9176
49 1 8.0368 2.7980 -4.4628
50 1 6.0377 1.8480 -3.3837
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000758304558.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:39
Heat of formation + Delta-G solvation = -36.442539 kcal
Electronic energy + Delta-G solvation = -31369.492346 eV
Core-core repulsion = 27361.802688 eV
Total energy + Delta-G solvation = -4007.689658 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-42.12961 -39.60361 -38.34446 -37.08305 -35.95736 -34.66875 -32.82947 -31.97711
-31.31961 -30.12711 -28.57171 -27.03467 -26.65426 -24.97691 -24.18794 -22.67471
-22.57947 -22.19117 -20.74715 -20.30648 -19.11727 -17.48322 -17.02455 -16.80931
-16.22522 -15.81820 -15.44977 -15.17894 -15.02651 -14.46435 -14.37175 -14.14648
-14.00827 -13.87643 -13.77249 -13.63721 -13.61941 -13.42718 -13.12997 -12.47636
-12.43767 -12.27848 -12.12415 -12.06740 -11.98893 -11.84141 -11.72029 -11.32676
-11.18984 -11.04623 -11.00878 -10.85096 -10.62922 -10.35893 -10.28738 -10.01419
-9.77032 -9.47392 -9.11707 -8.72051 -8.68095 -8.33732 -7.52734 -6.32864
-4.01733 1.04125 1.20716 1.68076 2.67922 2.92294 3.46573 3.51018
3.52783 3.71777 4.03640 4.16929 4.25244 4.40131 4.54873 4.61286
4.67357 4.73790 4.80180 4.83926 5.11092 5.21240 5.27732 5.30384
5.31612 5.38995 5.42866 5.45897 5.50800 5.54210 5.57809 5.59433
5.70768 5.84130 5.85149 5.87511 5.92174 5.95397 6.09106 6.20976
6.23949 6.33906 6.37898 6.42748 6.67803 6.77296 6.83122 6.94411
7.10699 7.49665 7.75366 7.81935 8.04336 8.25145 8.67327 8.90991
9.68231 11.05864
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.010753 B = 0.003705 C = 0.003061
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2603.398642 B = 7555.052393 C = 9145.188177
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.040 3.960
3 N -0.539 5.539
4 C 0.188 3.812
5 C -0.587 4.587
6 H 0.064 0.936
7 C 0.016 3.984
8 N -0.916 5.916
9 Si 1.071 2.929
10 H -0.284 1.284
11 H -0.288 1.288
12 H -0.287 1.287
13 C 0.272 3.728
14 N -0.560 5.560
15 C 0.528 3.472
16 O -0.489 6.489
17 C -0.149 4.149
18 C -0.056 4.056
19 C -0.135 4.135
20 C -0.069 4.069
21 C -0.100 4.100
22 C -0.118 4.118
23 C -0.086 4.086
24 C -0.115 4.115
25 C -0.114 4.114
26 C -0.108 4.108
27 C 0.539 3.461
28 O -0.446 6.446
29 H 0.060 0.940
30 H 0.053 0.947
31 H 0.047 0.953
32 H 0.070 0.930
33 H 0.026 0.974
34 H -0.018 1.018
35 H 0.031 0.969
36 H 0.265 0.735
37 H 0.114 0.886
38 H 0.060 0.940
39 H 0.122 0.878
40 H 0.118 0.882
41 H 0.076 0.924
42 H 0.076 0.924
43 H 0.070 0.930
44 H 0.131 0.869
45 H 0.124 0.876
46 H 0.070 0.930
47 H 0.066 0.934
48 H 0.066 0.934
49 H 0.123 0.877
50 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.728 -4.686 -22.905 24.955
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.088 4.088
3 N -0.265 5.265
4 C 0.063 3.937
5 C -0.626 4.626
6 H 0.083 0.917
7 C -0.187 4.187
8 N -0.552 5.552
9 Si 0.899 3.101
10 H -0.210 1.210
11 H -0.214 1.214
12 H -0.214 1.214
13 C 0.062 3.938
14 N -0.303 5.303
15 C 0.316 3.684
16 O -0.363 6.363
17 C -0.188 4.188
18 C -0.059 4.059
19 C -0.192 4.192
20 C -0.070 4.070
21 C -0.118 4.118
22 C -0.136 4.136
23 C -0.086 4.086
24 C -0.171 4.171
25 C -0.132 4.132
26 C -0.126 4.126
27 C 0.324 3.676
28 O -0.313 6.313
29 H 0.079 0.921
30 H 0.072 0.928
31 H 0.066 0.934
32 H 0.088 0.912
33 H 0.045 0.955
34 H 0.000 1.000
35 H 0.048 0.952
36 H 0.075 0.925
37 H 0.132 0.868
38 H 0.077 0.923
39 H 0.140 0.860
40 H 0.136 0.864
41 H 0.095 0.905
42 H 0.095 0.905
43 H 0.089 0.911
44 H 0.149 0.851
45 H 0.142 0.858
46 H 0.088 0.912
47 H 0.085 0.915
48 H 0.085 0.915
49 H 0.141 0.859
50 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 8.263 -2.943 -21.806 23.504
hybrid contribution 0.541 -2.002 -0.116 2.077
sum 8.804 -4.945 -21.922 24.136
Atomic orbital electron populations
1.21702 0.95317 1.00150 1.02538 1.22255 0.96249 0.89932 1.00324
1.61752 1.17534 1.15977 1.31223 1.19853 0.95633 0.95790 0.82421
1.22064 1.52233 0.90227 0.98036 0.91745 1.25810 0.93805 1.06814
0.92303 1.70824 1.46289 1.13152 1.24985 0.83510 0.76720 0.74369
0.75496 1.20973 1.21404 1.21379 1.22139 0.92092 1.03421 0.76183
1.46950 1.64341 1.08769 1.10233 1.20702 0.73767 0.83896 0.90006
1.90726 1.46410 1.22816 1.76310 1.22729 1.07050 0.94513 0.94552
1.20346 0.96744 0.95030 0.93804 1.21822 0.94053 1.03238 1.00071
1.19185 0.92289 0.99346 0.96143 1.21099 0.99188 0.96478 0.95059
1.21026 0.91887 1.00461 1.00265 1.19966 0.95281 0.97627 0.95729
1.20801 0.95209 1.00631 1.00500 1.20971 0.98477 0.98019 0.95780
1.20974 0.92125 0.99934 0.99530 1.20327 0.74688 0.84629 0.87925
1.90818 1.42496 1.19867 1.78123 0.92113 0.92800 0.93358 0.91177
0.95522 1.00014 0.95157 0.92491 0.86799 0.92258 0.85983 0.86369
0.90494 0.90517 0.91137 0.85119 0.85840 0.91175 0.91480 0.91494
0.85877 0.86472
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.49 10.07 37.16 0.37 -2.11 16
2 C 0.04 0.79 5.54 -3.82 -0.02 0.76 16
3 N -0.54 -11.96 4.45 -239.98 -1.07 -13.02 16
4 C 0.19 4.89 3.87 -4.98 -0.02 4.87 16
5 C -0.59 -16.99 8.52 -34.44 -0.29 -17.28 16
6 H 0.06 1.94 7.81 -52.49 -0.41 1.53 16
7 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16
8 N -0.92 -28.17 13.65 55.43 0.76 -27.41 16
9 Si 1.07 26.48 29.90 -169.99 -5.08 21.39 16
10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16
12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
13 C 0.27 5.49 5.19 -63.32 -0.33 5.16 16
14 N -0.56 -9.52 2.77 -118.62 -0.33 -9.85 16
15 C 0.53 7.77 7.41 -11.08 -0.08 7.69 16
16 O -0.49 -8.32 15.54 5.61 0.09 -8.23 16
17 C -0.15 -1.53 6.10 -26.94 -0.16 -1.69 16
18 C -0.06 -0.65 0.90 -155.87 -0.14 -0.79 16
19 C -0.13 -1.32 7.09 37.16 0.26 -1.06 16
20 C -0.07 -0.77 4.77 -104.63 -0.50 -1.27 16
21 C -0.10 -0.97 9.05 -39.58 -0.36 -1.33 16
22 C -0.12 -1.06 9.70 -39.58 -0.38 -1.45 16
23 C -0.09 -0.79 5.88 -104.62 -0.62 -1.40 16
24 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16
25 C -0.11 -1.15 9.70 -39.59 -0.38 -1.54 16
26 C -0.11 -1.22 8.62 -39.59 -0.34 -1.56 16
27 C 0.54 9.06 6.22 -11.08 -0.07 8.99 16
28 O -0.45 -9.43 17.48 5.60 0.10 -9.33 16
29 H 0.06 1.20 6.65 -51.93 -0.35 0.85 16
30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16
32 H 0.07 1.31 5.01 -51.93 -0.26 1.05 16
33 H 0.03 0.52 8.00 -51.93 -0.42 0.11 16
34 H -0.02 -0.48 7.99 -51.93 -0.42 -0.89 16
35 H 0.03 0.83 6.11 -51.93 -0.32 0.51 16
36 H 0.26 8.09 7.19 -40.82 -0.29 7.79 16
37 H 0.11 2.56 6.93 -51.93 -0.36 2.20 16
38 H 0.06 1.14 7.60 -51.93 -0.39 0.75 16
39 H 0.12 0.98 7.74 -51.93 -0.40 0.58 16
40 H 0.12 1.01 7.39 -51.93 -0.38 0.62 16
41 H 0.08 0.82 7.79 -51.93 -0.40 0.42 16
42 H 0.08 0.51 7.39 -51.93 -0.38 0.13 16
43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
44 H 0.13 1.02 6.02 -52.49 -0.32 0.70 16
45 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16
46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16
47 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16
48 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16
49 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16
50 H 0.12 1.34 7.96 -52.48 -0.42 0.93 16
LS Contribution 401.66 15.07 6.05 6.05
Total: -1.00 -34.65 401.66 -9.98 -44.62
By element:
Atomic # 1 Polarization: 7.51 SS G_CDS: -7.69 Total: -0.18 kcal
Atomic # 6 Polarization: -1.24 SS G_CDS: -2.80 Total: -4.04 kcal
Atomic # 7 Polarization: -49.64 SS G_CDS: -0.64 Total: -50.28 kcal
Atomic # 8 Polarization: -17.75 SS G_CDS: 0.19 Total: -17.56 kcal
Atomic # 14 Polarization: 26.48 SS G_CDS: -5.08 Total: 21.39 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -34.65 -9.98 -44.62 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000758304558.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.182 kcal
(2) G-P(sol) polarization free energy of solvation -34.648 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.466 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.624 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.443 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds