Wall clock time and date at job start Wed Apr 1 2020 04:30:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46907 * 109.47119 * 2 1
4 4 C 1.46900 * 110.99774 * 75.56822 * 3 2 1
5 5 C 1.50701 * 109.46986 * 199.66295 * 4 3 2
6 6 H 1.08001 * 119.99935 * 355.13436 * 5 4 3
7 7 C 1.37873 * 120.00379 * 175.13588 * 5 4 3
8 8 N 1.31522 * 119.99873 * 359.97438 * 7 5 4
9 9 Si 1.86799 * 120.00325 * 180.02562 * 7 5 4
10 10 H 1.48503 * 109.47051 * 180.02562 * 9 7 5
11 11 H 1.48501 * 109.46905 * 299.99493 * 9 7 5
12 12 H 1.48493 * 109.47086 * 59.99570 * 9 7 5
13 13 C 1.46901 * 111.00015 * 199.52273 * 3 2 1
14 14 N 1.46496 * 109.47220 * 81.04402 * 13 3 2
15 15 C 1.33873 * 122.75917 * 269.71117 * 14 13 3
16 16 O 1.21217 * 125.40503 * 359.97438 * 15 14 13
17 17 C 1.51323 * 109.20207 * 179.84401 * 15 14 13
18 18 C 1.54227 * 103.55627 * 0.38329 * 17 15 14
19 19 C 1.52999 * 110.60839 * 241.26580 * 18 17 15
20 20 C 1.50703 * 110.60748 * 118.29400 * 18 17 15
21 21 C 1.38231 * 119.99682 * 120.52483 * 20 18 17
22 22 C 1.38241 * 119.99922 * 179.74592 * 21 20 18
23 23 C 1.38244 * 119.99339 * 0.53066 * 22 21 20
24 24 C 1.50703 * 119.99513 * 179.76818 * 23 22 21
25 25 C 1.38230 * 120.00155 * 359.74448 * 23 22 21
26 26 C 1.38228 * 119.99989 * 300.80237 * 20 18 17
27 27 C 1.33879 * 122.76161 * 89.99726 * 14 13 3
28 28 O 1.21230 * 125.39423 * 0.02562 * 27 14 13
29 29 H 1.08997 * 109.47724 * 304.83203 * 1 2 3
30 30 H 1.09001 * 109.46825 * 64.83113 * 1 2 3
31 31 H 1.09004 * 109.46899 * 184.83076 * 1 2 3
32 32 H 1.08998 * 109.47798 * 239.99963 * 2 1 3
33 33 H 1.09004 * 109.47024 * 119.99609 * 2 1 3
34 34 H 1.08998 * 109.47319 * 79.66303 * 4 3 2
35 35 H 1.09005 * 109.47309 * 319.65824 * 4 3 2
36 36 H 0.97004 * 119.99389 * 0.02562 * 8 7 5
37 37 H 1.08996 * 109.46685 * 201.05029 * 13 3 2
38 38 H 1.09003 * 109.46580 * 321.04212 * 13 3 2
39 39 H 1.09000 * 110.79689 * 241.77650 * 17 15 14
40 40 H 1.09003 * 110.54814 * 118.87428 * 17 15 14
41 41 H 1.09000 * 109.46989 * 175.59047 * 19 18 17
42 42 H 1.09005 * 109.46725 * 295.58445 * 19 18 17
43 43 H 1.08998 * 109.47139 * 55.58500 * 19 18 17
44 44 H 1.08000 * 120.00531 * 0.02562 * 21 20 18
45 45 H 1.07995 * 120.00218 * 180.30396 * 22 21 20
46 46 H 1.09002 * 109.47111 * 269.97885 * 24 23 22
47 47 H 1.09004 * 109.46909 * 29.98072 * 24 23 22
48 48 H 1.09000 * 109.47023 * 149.97772 * 24 23 22
49 49 H 1.08002 * 119.99396 * 179.97438 * 25 23 22
50 50 H 1.08007 * 120.00496 * 0.02562 * 26 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.8729 1.9953 1.3282
5 6 1.9152 3.4961 1.1989
6 1 2.1171 3.9500 0.2399
7 6 1.6961 4.2899 2.3047
8 7 1.4497 3.7372 3.4724
9 14 1.7479 6.1502 2.1443
10 1 1.4829 6.7688 3.4681
11 1 3.0889 6.5684 1.6626
12 1 0.7137 6.5924 1.1747
13 6 3.4138 1.4505 -0.4583
14 7 3.4490 1.4108 -1.9223
15 6 3.5353 0.2679 -2.6141
16 8 3.5939 -0.8424 -2.1314
17 6 3.5450 0.5817 -4.0944
18 6 3.4583 2.1209 -4.1383
19 6 2.1884 2.5683 -4.8650
20 6 4.6818 2.7025 -4.7985
21 6 4.5511 3.4768 -5.9362
22 6 5.6729 4.0146 -6.5388
23 6 6.9264 3.7691 -6.0100
24 6 8.1498 4.3511 -6.6700
25 6 7.0575 2.9901 -4.8756
26 6 5.9351 2.4570 -4.2697
27 6 3.4030 2.5148 -2.6783
28 8 3.3293 3.6500 -2.2595
29 1 -0.3634 0.5869 0.8435
30 1 -0.3633 0.4371 -0.9301
31 1 -0.3633 -1.0241 0.0865
32 1 1.8934 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8901
34 1 2.6867 1.6630 1.9726
35 1 0.9194 1.6948 1.7627
36 1 1.4225 2.7711 3.5556
37 1 3.8679 2.3777 -0.1089
38 1 3.9679 0.6013 -0.0583
39 1 2.6835 0.1347 -4.5904
40 1 4.4718 0.2365 -4.5526
41 1 2.1058 3.6541 -4.8171
42 1 2.2362 2.2531 -5.9074
43 1 1.3186 2.1163 -4.3883
44 1 3.5722 3.6652 -6.3517
45 1 5.5704 4.6236 -7.4248
46 1 8.5280 3.6516 -7.4155
47 1 7.8885 5.2921 -7.1542
48 1 8.9178 4.5307 -5.9176
49 1 8.0368 2.7980 -4.4628
50 1 6.0377 1.8480 -3.3837
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000758304558.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:38
Heat of formation + Delta-G solvation = -57.626381 kcal
Electronic energy + Delta-G solvation = -31370.410946 eV
Core-core repulsion = 27361.802688 eV
Total energy + Delta-G solvation = -4008.608258 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-43.33663 -40.48631 -39.63281 -38.76860 -37.17266 -35.92094 -34.97778 -32.80372
-32.11002 -31.63315 -29.72757 -28.43622 -27.69827 -26.53408 -25.45283 -24.65347
-23.37775 -23.15012 -22.23661 -21.50541 -20.33164 -19.15629 -18.52937 -18.22668
-17.54406 -16.97124 -16.53678 -16.28253 -16.11744 -15.95751 -15.79171 -15.59987
-15.52354 -15.18424 -14.94730 -14.63152 -14.54669 -14.29991 -14.21191 -14.06140
-13.80106 -13.64620 -13.35582 -13.13127 -13.05214 -12.83614 -12.75497 -12.72719
-12.66157 -12.60061 -12.52057 -12.04497 -11.96674 -11.92161 -11.77384 -11.56307
-11.07293 -10.98596 -10.87020 -10.61120 -9.85251 -9.49218 -9.36697 -8.70668
-6.40482 0.26454 0.42943 0.48577 1.37294 1.47766 1.55396 1.67468
1.76780 2.49913 2.66387 2.95135 3.04641 3.12140 3.17308 3.35841
3.52589 3.76432 3.80872 3.96745 4.00024 4.07089 4.12966 4.18027
4.19544 4.36500 4.46941 4.49892 4.51670 4.57371 4.57968 4.68929
4.71294 4.74166 4.82549 4.85396 4.86431 4.86834 4.93866 4.96177
5.14563 5.16482 5.17850 5.28166 5.48061 5.57312 5.68259 5.69247
5.80205 5.87428 6.07463 6.14434 6.27660 6.35863 6.56482 6.71450
7.36673 8.68045
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.010753 B = 0.003705 C = 0.003061
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2603.398642 B = 7555.052393 C = 9145.188177
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.042 3.958
3 N -0.546 5.546
4 C 0.203 3.797
5 C -0.594 4.594
6 H 0.048 0.952
7 C -0.030 4.030
8 N -0.934 5.934
9 Si 1.114 2.886
10 H -0.276 1.276
11 H -0.277 1.277
12 H -0.274 1.274
13 C 0.278 3.722
14 N -0.566 5.566
15 C 0.525 3.475
16 O -0.512 6.512
17 C -0.131 4.131
18 C -0.040 4.040
19 C -0.135 4.135
20 C -0.085 4.085
21 C -0.101 4.101
22 C -0.122 4.122
23 C -0.089 4.089
24 C -0.114 4.114
25 C -0.128 4.128
26 C -0.126 4.126
27 C 0.531 3.469
28 O -0.502 6.502
29 H 0.035 0.965
30 H 0.057 0.943
31 H 0.081 0.919
32 H 0.083 0.917
33 H 0.022 0.978
34 H -0.037 1.037
35 H 0.017 0.983
36 H 0.254 0.746
37 H 0.081 0.919
38 H 0.065 0.935
39 H 0.158 0.842
40 H 0.144 0.856
41 H 0.065 0.935
42 H 0.119 0.881
43 H 0.065 0.935
44 H 0.153 0.847
45 H 0.150 0.850
46 H 0.083 0.917
47 H 0.077 0.923
48 H 0.067 0.933
49 H 0.132 0.868
50 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.786 -4.777 -26.658 28.472
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.086 4.086
3 N -0.273 5.273
4 C 0.076 3.924
5 C -0.633 4.633
6 H 0.066 0.934
7 C -0.228 4.228
8 N -0.572 5.572
9 Si 0.936 3.064
10 H -0.201 1.201
11 H -0.203 1.203
12 H -0.199 1.199
13 C 0.066 3.934
14 N -0.309 5.309
15 C 0.317 3.683
16 O -0.387 6.387
17 C -0.169 4.169
18 C -0.044 4.044
19 C -0.192 4.192
20 C -0.086 4.086
21 C -0.118 4.118
22 C -0.140 4.140
23 C -0.089 4.089
24 C -0.171 4.171
25 C -0.146 4.146
26 C -0.144 4.144
27 C 0.321 3.679
28 O -0.373 6.373
29 H 0.054 0.946
30 H 0.076 0.924
31 H 0.100 0.900
32 H 0.101 0.899
33 H 0.041 0.959
34 H -0.019 1.019
35 H 0.035 0.965
36 H 0.064 0.936
37 H 0.099 0.901
38 H 0.082 0.918
39 H 0.176 0.824
40 H 0.161 0.839
41 H 0.084 0.916
42 H 0.137 0.863
43 H 0.084 0.916
44 H 0.170 0.830
45 H 0.167 0.833
46 H 0.102 0.898
47 H 0.096 0.904
48 H 0.086 0.914
49 H 0.150 0.850
50 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 8.330 -3.084 -25.605 27.102
hybrid contribution 0.617 -2.025 1.019 2.350
sum 8.947 -5.110 -24.586 26.658
Atomic orbital electron populations
1.21660 0.93870 1.01847 1.01592 1.22333 0.97403 0.88183 1.00645
1.61701 1.18894 1.17786 1.28869 1.19498 0.94032 0.94685 0.84153
1.22247 1.51826 0.91882 0.97295 0.93408 1.27193 0.92910 1.10908
0.91814 1.70938 1.47965 1.12577 1.25719 0.82958 0.77583 0.69723
0.76132 1.20124 1.20312 1.19898 1.21787 0.90920 1.01871 0.78794
1.47061 1.64724 1.10327 1.08760 1.21499 0.72392 0.82687 0.91769
1.90713 1.47339 1.23430 1.77193 1.22853 1.09876 0.93445 0.90772
1.20352 0.98352 0.95912 0.89750 1.21920 0.92487 1.02616 1.02144
1.19198 0.91591 1.00696 0.97094 1.21379 1.00556 0.95484 0.94420
1.21393 0.91476 1.00203 1.00911 1.20331 0.96594 0.96798 0.95208
1.20855 0.94149 1.01307 1.00741 1.21181 0.98598 0.98420 0.96416
1.21031 0.93060 1.00763 0.99585 1.21367 0.72715 0.83615 0.90240
1.90775 1.45091 1.21881 1.79524 0.94587 0.92402 0.90021 0.89917
0.95944 1.01906 0.96508 0.93624 0.90122 0.91761 0.82409 0.83860
0.91601 0.86276 0.91552 0.82987 0.83272 0.89797 0.90391 0.91379
0.84980 0.87753
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.65 10.07 71.98 0.72 -3.93 16
2 C 0.04 1.64 5.54 86.30 0.48 2.12 16
3 N -0.55 -25.21 4.45 -913.15 -4.07 -29.27 16
4 C 0.20 11.09 3.87 85.56 0.33 11.42 16
5 C -0.59 -35.86 8.52 25.60 0.22 -35.64 16
6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16
7 C -0.03 -1.83 5.46 84.65 0.46 -1.37 16
8 N -0.93 -59.05 13.65 21.45 0.29 -58.75 16
9 Si 1.11 54.12 29.90 68.60 2.05 56.17 16
10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16
11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16
12 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16
13 C 0.28 11.83 5.19 170.81 0.89 12.72 16
14 N -0.57 -19.68 2.77 -767.03 -2.13 -21.80 16
15 C 0.53 14.97 7.41 88.00 0.65 15.63 16
16 O -0.51 -16.92 15.54 -2.84 -0.04 -16.97 16
17 C -0.13 -2.30 6.10 30.46 0.19 -2.12 16
18 C -0.04 -0.88 0.90 -53.06 -0.05 -0.92 16
19 C -0.13 -2.26 7.09 71.98 0.51 -1.75 16
20 C -0.09 -1.77 4.77 -19.87 -0.09 -1.86 16
21 C -0.10 -1.66 9.05 22.27 0.20 -1.46 16
22 C -0.12 -1.82 9.70 22.27 0.22 -1.60 16
23 C -0.09 -1.44 5.88 -19.86 -0.12 -1.56 16
24 C -0.11 -1.20 10.01 71.24 0.71 -0.49 16
25 C -0.13 -2.45 9.70 22.27 0.22 -2.24 16
26 C -0.13 -2.80 8.62 22.27 0.19 -2.61 16
27 C 0.53 18.23 6.22 87.99 0.55 18.78 16
28 O -0.50 -22.26 17.48 -2.87 -0.05 -22.31 16
29 H 0.03 1.43 6.65 -2.39 -0.02 1.42 16
30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16
31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16
32 H 0.08 3.04 5.01 -2.39 -0.01 3.03 16
33 H 0.02 0.89 8.00 -2.38 -0.02 0.87 16
34 H -0.04 -2.11 7.99 -2.39 -0.02 -2.13 16
35 H 0.02 0.97 6.11 -2.38 -0.01 0.96 16
36 H 0.25 16.18 7.19 -92.71 -0.67 15.51 16
37 H 0.08 3.94 6.93 -2.39 -0.02 3.92 16
38 H 0.06 2.61 7.60 -2.39 -0.02 2.60 16
39 H 0.16 1.77 7.74 -2.39 -0.02 1.75 16
40 H 0.14 1.94 7.39 -2.39 -0.02 1.92 16
41 H 0.06 1.28 7.79 -2.39 -0.02 1.26 16
42 H 0.12 1.00 7.39 -2.38 -0.02 0.98 16
43 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16
44 H 0.15 1.77 6.02 -2.91 -0.02 1.75 16
45 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16
46 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16
47 H 0.08 0.67 8.09 -2.38 -0.02 0.65 16
48 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16
49 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16
50 H 0.10 2.47 7.96 -2.91 -0.02 2.45 16
Total: -1.00 -79.42 401.66 3.37 -76.05
By element:
Atomic # 1 Polarization: 12.73 SS G_CDS: 1.04 Total: 13.77 kcal
Atomic # 6 Polarization: -3.15 SS G_CDS: 6.28 Total: 3.12 kcal
Atomic # 7 Polarization: -103.93 SS G_CDS: -5.90 Total: -109.83 kcal
Atomic # 8 Polarization: -39.18 SS G_CDS: -0.09 Total: -39.28 kcal
Atomic # 14 Polarization: 54.12 SS G_CDS: 2.05 Total: 56.17 kcal
Total: -79.42 3.37 -76.05 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000758304558.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.421 kcal
(2) G-P(sol) polarization free energy of solvation -79.421 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.000 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.047 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.626 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds