Wall clock time and date at job start Wed Apr 1 2020 03:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.34415 * 124.35022 * 269.70319 * 3 2 1 5 5 O 1.21284 * 124.93972 * 0.38507 * 4 3 2 6 6 C 1.51273 * 110.11910 * 180.24785 * 4 3 2 7 7 C 1.54630 * 104.13192 * 16.64754 * 6 4 3 8 8 H 1.08999 * 110.97032 * 216.86147 * 7 6 4 9 9 C 1.50703 * 110.97006 * 93.10677 * 7 6 4 10 10 O 1.21286 * 119.99615 * 247.62569 * 9 7 6 11 11 N 1.34772 * 120.00468 * 67.61486 * 9 7 6 12 12 C 1.46507 * 119.99643 * 0.02562 * 11 9 7 13 13 C 1.46497 * 120.00355 * 180.02562 * 11 9 7 14 14 C 1.50695 * 109.47290 * 90.00323 * 13 11 9 15 15 H 1.08002 * 119.99732 * 0.02562 * 14 13 11 16 16 C 1.37872 * 120.00163 * 180.02562 * 14 13 11 17 17 N 1.31523 * 120.00079 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00164 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47121 * 89.99863 * 18 16 14 20 20 H 1.48505 * 109.46908 * 209.99833 * 18 16 14 21 21 H 1.48500 * 109.46901 * 329.99811 * 18 16 14 22 22 C 1.46762 * 124.35121 * 89.99717 * 3 2 1 23 23 H 1.09007 * 110.24575 * 43.89836 * 22 3 2 24 24 C 1.50703 * 110.24401 * 281.98991 * 22 3 2 25 25 C 1.38257 * 120.00250 * 321.17450 * 24 22 3 26 26 C 1.38209 * 120.00348 * 179.81066 * 25 24 22 27 27 C 1.38265 * 119.99815 * 0.40230 * 26 25 24 28 28 C 1.38209 * 119.99728 * 359.85521 * 27 26 25 29 29 C 1.50698 * 119.99870 * 179.97438 * 28 27 26 30 30 C 1.38213 * 119.99767 * 141.45411 * 24 22 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 34 34 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 35 35 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 36 36 H 1.08998 * 110.70516 * 257.89619 * 6 4 3 37 37 H 1.09005 * 110.44696 * 135.27059 * 6 4 3 38 38 H 1.09001 * 109.46748 * 90.00124 * 12 11 9 39 39 H 1.08999 * 109.46878 * 209.99691 * 12 11 9 40 40 H 1.08999 * 109.47125 * 329.99873 * 12 11 9 41 41 H 1.09001 * 109.47023 * 210.00386 * 13 11 9 42 42 H 1.09008 * 109.46730 * 330.00011 * 13 11 9 43 43 H 0.96996 * 120.00117 * 180.02562 * 17 16 14 44 44 H 1.08001 * 119.99284 * 0.02562 * 25 24 22 45 45 H 1.08003 * 120.00334 * 180.23331 * 26 25 24 46 46 H 1.07994 * 119.99557 * 179.82772 * 27 26 25 47 47 H 1.09001 * 109.46910 * 269.97690 * 29 28 27 48 48 H 1.09006 * 109.47274 * 29.97368 * 29 28 27 49 49 H 1.09000 * 109.47611 * 149.97986 * 29 28 27 50 50 H 1.07996 * 120.00565 * 359.97438 * 30 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2766 2.0944 -1.1097 5 8 2.1329 1.6903 -2.2442 6 6 2.7694 3.4754 -0.7378 7 6 3.1744 3.3441 0.7487 8 1 2.9307 4.2517 1.3010 9 6 4.6382 3.0113 0.8816 10 8 4.9773 1.9275 1.3076 11 7 5.5703 3.9177 0.5269 12 6 5.1606 5.2269 0.0126 13 6 6.9933 3.5939 0.6555 14 6 7.4827 2.9639 -0.6230 15 1 6.8019 2.8196 -1.4489 16 6 8.7994 2.5718 -0.7383 17 7 9.6286 2.7481 0.2674 18 14 9.4063 1.7915 -2.3233 19 1 9.9007 2.8509 -3.2389 20 1 10.5101 0.8459 -2.0185 21 1 8.2905 1.0574 -2.9724 22 6 2.2944 2.1620 1.2117 23 1 2.8310 1.5527 1.9390 24 6 1.0076 2.6719 1.8078 25 6 -0.0083 3.1168 0.9823 26 6 -1.1899 3.5807 1.5289 27 6 -1.3528 3.6077 2.9017 28 6 -0.3352 3.1679 3.7271 29 6 -0.5126 3.1979 5.2233 30 6 0.8453 2.7001 3.1801 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.9745 4.2122 -0.8530 37 1 3.6322 3.7483 -1.3456 38 1 5.0579 5.9270 0.8417 39 1 5.9140 5.5959 -0.6833 40 1 4.2050 5.1319 -0.5031 41 1 7.5573 4.5061 0.8502 42 1 7.1339 2.8965 1.4814 43 1 10.5550 2.4725 0.1861 44 1 0.1202 3.0985 -0.0899 45 1 -1.9849 3.9247 0.8839 46 1 -2.2750 3.9728 3.3288 47 1 -0.1660 4.1558 5.6111 48 1 -1.5670 3.0674 5.4669 49 1 0.0670 2.3923 5.6741 50 1 1.6404 2.3565 3.8252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877981834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:54 Heat of formation + Delta-G solvation = -39.919203 kcal Electronic energy + Delta-G solvation = -31485.927606 eV Core-core repulsion = 27478.087189 eV Total energy + Delta-G solvation = -4007.840417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.32844 -39.23356 -38.64536 -36.35652 -34.93205 -33.99475 -32.87289 -32.54418 -31.48218 -29.83348 -27.77864 -27.27875 -27.10771 -25.93048 -24.28219 -23.06417 -22.48167 -21.92763 -20.80029 -19.22247 -18.66327 -17.32447 -16.67066 -16.55160 -16.26958 -15.85412 -15.52589 -15.12081 -15.01408 -14.75632 -14.40139 -14.26014 -14.04517 -13.94529 -13.50937 -13.30142 -13.15776 -13.05663 -12.95134 -12.68094 -12.46835 -12.42705 -12.16800 -12.01379 -11.94316 -11.83986 -11.58017 -11.48940 -11.19297 -11.17629 -11.13912 -11.01468 -10.88596 -10.58567 -10.16946 -9.69113 -9.62542 -9.13587 -8.93041 -8.82415 -8.63006 -8.44634 -7.72461 -6.06051 -4.10760 1.11233 1.20594 2.68506 3.01054 3.21248 3.30953 3.37650 3.44117 3.50076 3.80622 4.35115 4.41338 4.44523 4.50317 4.64723 4.72738 4.83418 4.95232 4.98768 5.09052 5.11918 5.21774 5.27043 5.28271 5.35729 5.36235 5.37185 5.47796 5.51280 5.55962 5.60886 5.70368 5.72850 5.77185 5.84223 5.86113 5.90909 5.95673 6.13140 6.17728 6.27284 6.36364 6.39405 6.67837 6.81056 6.98358 7.18646 7.38431 7.47004 7.90084 8.20166 8.26613 8.31389 8.84197 8.99494 9.54768 11.01977 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.003327 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.909040 B = 8413.315492 C = 9286.008078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.125 3.875 3 N -0.602 5.602 4 C 0.523 3.477 5 O -0.531 6.531 6 C -0.152 4.152 7 C -0.114 4.114 8 H 0.118 0.882 9 C 0.512 3.488 10 O -0.533 6.533 11 N -0.596 5.596 12 C 0.072 3.928 13 C 0.246 3.754 14 C -0.527 4.527 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.187 3.813 23 H 0.114 0.886 24 C -0.088 4.088 25 C -0.105 4.105 26 C -0.117 4.117 27 C -0.120 4.120 28 C -0.086 4.086 29 C -0.115 4.115 30 C -0.105 4.105 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.044 0.956 43 H 0.263 0.737 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.106 4.096 6.988 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.003 3.997 3 N -0.334 5.334 4 C 0.311 3.689 5 O -0.407 6.407 6 C -0.192 4.192 7 C -0.136 4.136 8 H 0.136 0.864 9 C 0.298 3.702 10 O -0.410 6.410 11 N -0.327 5.327 12 C -0.072 4.072 13 C 0.127 3.873 14 C -0.566 4.566 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 C 0.083 3.917 23 H 0.132 0.868 24 C -0.089 4.089 25 C -0.123 4.123 26 C -0.135 4.135 27 C -0.138 4.138 28 C -0.086 4.086 29 C -0.171 4.171 30 C -0.124 4.124 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -22.782 3.190 6.655 23.947 hybrid contribution 0.441 -0.259 -0.892 1.028 sum -22.341 2.930 5.763 23.257 Atomic orbital electron populations 1.22201 0.95911 1.01997 1.02427 1.21312 0.93959 0.81024 1.03413 1.48174 1.65343 1.13556 1.06354 1.20735 0.76288 0.87497 0.84411 1.90712 1.53817 1.75252 1.20958 1.22536 1.04112 0.96641 0.95888 1.22337 0.94330 0.99768 0.97162 0.86446 1.19817 0.86378 0.84900 0.79149 1.90677 1.81675 1.22404 1.46265 1.48095 1.08944 1.13770 1.61937 1.21875 1.01017 0.85315 0.98997 1.19319 0.73001 0.96824 0.98132 1.21419 0.94981 1.40446 0.99742 0.92467 1.24916 0.96633 0.95644 0.96784 1.69930 1.05047 1.47611 1.30786 0.86517 0.78533 0.79268 0.83298 1.20572 1.21056 1.19798 1.20374 0.91301 0.92101 0.87970 0.86808 1.20078 0.95708 0.99472 0.93625 1.20946 0.93289 0.98400 0.99661 1.21093 0.97427 0.99923 0.95051 1.21022 0.98742 1.00606 0.93469 1.19880 0.93970 0.98735 0.96040 1.20795 1.02370 1.02605 0.91363 1.20923 0.97275 1.00095 0.94070 0.91785 0.92484 0.92118 0.90239 0.90001 0.87092 0.86659 0.93457 0.90495 0.91824 0.94848 0.93774 0.92703 0.86513 0.86178 0.86301 0.91096 0.91685 0.91411 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 9.77 37.16 0.36 -1.41 16 2 C 0.12 1.60 6.65 -4.04 -0.03 1.58 16 3 N -0.60 -8.71 2.09 -166.20 -0.35 -9.05 16 4 C 0.52 8.60 6.95 -10.87 -0.08 8.53 16 5 O -0.53 -10.54 17.59 5.55 0.10 -10.44 16 6 C -0.15 -2.05 4.54 -26.75 -0.12 -2.18 16 7 C -0.11 -1.58 2.13 -90.14 -0.19 -1.78 16 8 H 0.12 1.32 7.79 -51.93 -0.40 0.91 16 9 C 0.51 10.03 7.00 -10.99 -0.08 9.95 16 10 O -0.53 -12.67 15.11 5.55 0.08 -12.59 16 11 N -0.60 -12.07 2.85 -182.95 -0.52 -12.59 16 12 C 0.07 1.07 9.89 59.85 0.59 1.66 16 13 C 0.25 6.30 5.16 -5.20 -0.03 6.27 16 14 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 18 Si 0.90 22.21 29.54 -169.99 -5.02 17.18 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 22 C 0.19 2.48 2.68 -68.17 -0.18 2.30 16 23 H 0.11 1.68 6.92 -51.92 -0.36 1.32 16 24 C -0.09 -0.95 4.26 -104.62 -0.45 -1.40 16 25 C -0.10 -1.07 7.69 -39.59 -0.30 -1.37 16 26 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 27 C -0.12 -1.01 9.70 -39.58 -0.38 -1.39 16 28 C -0.09 -0.76 5.88 -104.62 -0.62 -1.38 16 29 C -0.11 -0.76 10.01 36.00 0.36 -0.40 16 30 C -0.11 -1.06 9.34 -39.58 -0.37 -1.42 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.64 6.58 -51.93 -0.34 0.30 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 36 H 0.11 1.12 7.84 -51.93 -0.41 0.71 16 37 H 0.12 1.72 6.27 -51.93 -0.33 1.40 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 40 H 0.06 0.77 4.48 -51.93 -0.23 0.53 16 41 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 42 H 0.04 1.27 7.42 -51.92 -0.39 0.89 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.12 1.26 6.19 -52.49 -0.32 0.93 16 45 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 49 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 50 H 0.13 1.19 8.05 -52.49 -0.42 0.76 16 LS Contribution 403.02 15.07 6.07 6.07 Total: -1.00 -35.15 403.02 -9.02 -44.17 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.80 Total: 0.46 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.32 Total: 2.57 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.13 Total: -47.42 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.18 Total: -23.04 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.15 -9.02 -44.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877981834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.246 kcal (2) G-P(sol) polarization free energy of solvation -35.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds