Wall clock time and date at job start Wed Apr 1 2020 03:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47002 * 2 1 4 4 C 1.34425 * 124.34594 * 270.02526 * 3 2 1 5 5 O 1.21276 * 124.94105 * 0.40029 * 4 3 2 6 6 C 1.51276 * 110.11312 * 180.38695 * 4 3 2 7 7 C 1.54630 * 104.19855 * 16.24845 * 6 4 3 8 8 H 1.08998 * 110.96549 * 217.08575 * 7 6 4 9 9 C 1.50696 * 110.96837 * 93.32333 * 7 6 4 10 10 O 1.21285 * 120.00064 * 327.12665 * 9 7 6 11 11 N 1.34774 * 120.00108 * 147.12692 * 9 7 6 12 12 C 1.46496 * 120.00371 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.46953 * 34.99487 * 12 11 9 14 14 C 1.53007 * 109.46723 * 275.00190 * 12 11 9 15 15 C 1.50694 * 109.47621 * 154.99973 * 12 11 9 16 16 H 1.08000 * 119.99482 * 0.02562 * 15 12 11 17 17 C 1.37877 * 120.00495 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99597 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00333 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46949 * 60.00243 * 19 17 15 21 21 H 1.48500 * 109.46889 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46842 * 300.00238 * 19 17 15 23 23 C 1.46759 * 124.35217 * 89.99291 * 3 2 1 24 24 H 1.08999 * 110.24908 * 282.09565 * 23 3 2 25 25 C 1.50703 * 110.24382 * 44.01079 * 23 3 2 26 26 C 1.38257 * 120.00030 * 32.66575 * 25 23 3 27 27 C 1.38214 * 120.00020 * 179.70286 * 26 25 23 28 28 C 1.38255 * 119.99675 * 359.97438 * 27 26 25 29 29 C 1.38208 * 120.00610 * 0.02562 * 28 27 26 30 30 C 1.50700 * 120.00454 * 180.02562 * 29 28 27 31 31 C 1.38211 * 119.99618 * 212.39051 * 25 23 3 32 32 H 1.09003 * 109.46916 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47372 * 300.00482 * 1 2 3 34 34 H 1.08992 * 109.46935 * 60.00434 * 1 2 3 35 35 H 1.08993 * 109.47162 * 239.99845 * 2 1 3 36 36 H 1.09001 * 109.46913 * 119.99301 * 2 1 3 37 37 H 1.08998 * 110.48797 * 134.92928 * 6 4 3 38 38 H 1.09006 * 110.48160 * 257.43666 * 6 4 3 39 39 H 0.97003 * 119.99703 * 0.02562 * 11 9 7 40 40 H 1.08995 * 109.47450 * 59.99691 * 14 12 11 41 41 H 1.09004 * 109.46745 * 179.97438 * 14 12 11 42 42 H 1.08997 * 109.47288 * 299.99238 * 14 12 11 43 43 H 0.97003 * 120.00060 * 179.97438 * 18 17 15 44 44 H 1.07996 * 119.99997 * 359.72094 * 26 25 23 45 45 H 1.07998 * 119.99946 * 180.02562 * 27 26 25 46 46 H 1.08008 * 119.99937 * 180.02562 * 28 27 26 47 47 H 1.08998 * 109.47336 * 89.99611 * 30 29 28 48 48 H 1.09002 * 109.47299 * 210.00071 * 30 29 28 49 49 H 1.08999 * 109.46953 * 329.99605 * 30 29 28 50 50 H 1.07997 * 120.00603 * 0.27913 * 31 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2707 2.0965 -1.1099 5 8 2.1207 1.6946 -2.2442 6 6 2.7686 3.4757 -0.7380 7 6 3.1739 3.3445 0.7485 8 1 2.9299 4.2520 1.3008 9 6 4.6378 3.0121 0.8810 10 8 5.1827 2.3278 0.0409 11 7 5.3414 3.4752 1.9331 12 6 6.7646 3.1525 2.0617 13 1 7.2198 3.1164 1.0719 14 6 6.9194 1.7919 2.7442 15 6 7.4468 4.2105 2.8900 16 1 6.8770 5.0401 3.2819 17 6 8.7980 4.1189 3.1485 18 7 9.4916 3.1084 2.6717 19 14 9.6438 5.4308 4.1747 20 1 9.0232 5.4810 5.5229 21 1 11.0864 5.1036 4.3051 22 1 9.4940 6.7510 3.5114 23 6 2.2942 2.1621 1.2116 24 1 1.3634 2.5293 1.6439 25 6 3.0386 1.3206 2.2161 26 6 3.9234 0.3499 1.7843 27 6 4.6107 -0.4177 2.7056 28 6 4.4136 -0.2145 4.0589 29 6 3.5291 0.7557 4.4905 30 6 3.3148 0.9776 5.9656 31 6 2.8408 1.5230 3.5689 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5137 0.8901 37 1 3.6316 3.7466 -1.3462 38 1 1.9739 4.2125 -0.8553 39 1 4.9054 4.0221 2.6052 40 1 6.4260 1.0266 2.1451 41 1 7.9783 1.5516 2.8394 42 1 6.4642 1.8280 3.7339 43 1 10.4423 3.0441 2.8532 44 1 4.0779 0.1918 0.7272 45 1 5.3022 -1.1756 2.3684 46 1 4.9510 -0.8141 4.7789 47 1 4.0240 1.7217 6.3280 48 1 2.2980 1.3315 6.1359 49 1 3.4672 0.0398 6.4999 50 1 2.1496 2.2811 3.9062 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878534159.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:03 Heat of formation + Delta-G solvation = -47.267693 kcal Electronic energy + Delta-G solvation = -32486.541288 eV Core-core repulsion = 28478.382216 eV Total energy + Delta-G solvation = -4008.159071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24122 -38.94085 -38.41542 -36.34011 -34.78784 -33.80900 -32.61891 -32.33735 -31.31235 -29.87335 -28.69756 -27.08388 -26.57606 -25.22008 -24.12105 -23.03683 -21.98425 -21.10105 -20.39488 -19.42538 -18.99136 -17.60406 -16.76860 -16.40974 -15.98257 -15.55279 -15.23733 -15.14298 -14.85809 -14.54121 -14.37200 -14.09452 -13.75682 -13.57114 -13.46843 -13.17434 -13.05624 -12.86125 -12.80502 -12.40554 -12.30677 -12.22084 -12.12570 -11.94653 -11.65592 -11.55922 -11.45841 -11.12484 -11.06538 -10.96695 -10.85139 -10.81668 -10.58780 -10.31330 -10.18167 -9.65254 -9.07181 -9.05845 -8.75025 -8.55013 -8.47871 -8.29442 -7.86246 -6.11354 -4.20462 1.48969 1.63215 2.72088 3.01082 3.23969 3.28425 3.29996 3.30979 3.91678 3.96008 4.32778 4.35387 4.52112 4.79288 4.94508 4.96276 5.02317 5.04535 5.13482 5.17297 5.21417 5.31558 5.31932 5.41674 5.48375 5.53892 5.62860 5.68661 5.69943 5.74714 5.78001 5.84322 5.92317 5.96266 6.05623 6.19566 6.29916 6.51927 6.71703 6.77145 6.81209 6.90082 7.06664 7.17040 7.21208 7.23185 7.49660 7.58842 7.71152 7.95464 8.18249 8.29388 8.68166 8.78823 9.13386 9.46922 10.94114 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.004299 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.587615 B = 6511.510208 C = 7825.388045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.119 3.881 3 N -0.608 5.608 4 C 0.533 3.467 5 O -0.534 6.534 6 C -0.137 4.137 7 C -0.123 4.123 8 H 0.112 0.888 9 C 0.516 3.484 10 O -0.546 6.546 11 N -0.699 5.699 12 C 0.269 3.731 13 H 0.044 0.956 14 C -0.141 4.141 15 C -0.533 4.533 16 H 0.058 0.942 17 C 0.068 3.932 18 N -0.883 5.883 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.195 3.805 24 H 0.093 0.907 25 C -0.106 4.106 26 C -0.084 4.084 27 C -0.105 4.105 28 C -0.107 4.107 29 C -0.086 4.086 30 C -0.112 4.112 31 C -0.105 4.105 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.386 0.614 40 H 0.022 0.978 41 H 0.082 0.918 42 H 0.024 0.976 43 H 0.264 0.736 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.595 -3.858 4.012 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.002 4.002 3 N -0.342 5.342 4 C 0.321 3.679 5 O -0.411 6.411 6 C -0.178 4.178 7 C -0.145 4.145 8 H 0.130 0.870 9 C 0.299 3.701 10 O -0.425 6.425 11 N -0.345 5.345 12 C 0.167 3.833 13 H 0.062 0.938 14 C -0.200 4.200 15 C -0.571 4.571 16 H 0.077 0.923 17 C -0.135 4.135 18 N -0.520 5.520 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C 0.090 3.910 24 H 0.111 0.889 25 C -0.107 4.107 26 C -0.102 4.102 27 C -0.123 4.123 28 C -0.125 4.125 29 C -0.086 4.086 30 C -0.168 4.168 31 C -0.123 4.123 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.218 0.782 40 H 0.041 0.959 41 H 0.101 0.899 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.141 0.859 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.066 -4.723 2.805 17.928 hybrid contribution 0.526 1.059 1.076 1.599 sum -16.540 -3.664 3.881 17.380 Atomic orbital electron populations 1.22134 0.95972 1.02101 1.02185 1.21388 0.93966 0.81441 1.03441 1.48213 1.65768 1.13765 1.06411 1.20656 0.75567 0.87491 0.84148 1.90689 1.53867 1.75473 1.21046 1.22247 1.03760 0.96140 0.95610 1.22502 0.95245 0.99213 0.97523 0.87028 1.19729 0.86901 0.80835 0.82625 1.90680 1.70945 1.38905 1.41933 1.46454 1.13163 1.51325 1.23557 1.18683 0.74238 0.93104 0.97263 0.93784 1.22096 1.03064 0.97214 0.97589 1.21173 0.93886 1.08396 1.33652 0.92343 1.24853 0.97162 0.95770 0.95759 1.69899 1.07991 1.29586 1.44532 0.86562 0.78471 0.81833 0.80529 1.20232 1.21191 1.20227 1.20342 0.96537 0.89591 0.84521 0.88917 1.19676 0.99226 0.98247 0.93510 1.20996 0.94496 0.94623 1.00075 1.21029 0.98503 0.99658 0.93068 1.20977 0.97716 0.98106 0.95697 1.19726 0.97100 0.96270 0.95538 1.20757 1.01901 1.02229 0.91949 1.20641 1.00494 0.99506 0.91671 0.91646 0.92517 0.92373 0.90153 0.89939 0.87051 0.87441 0.78198 0.95901 0.89921 0.95698 0.92627 0.85881 0.86413 0.86549 0.90975 0.91964 0.91935 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.24 37.16 0.38 -1.20 16 2 C 0.12 1.41 5.70 -4.04 -0.02 1.39 16 3 N -0.61 -8.08 2.15 -166.20 -0.36 -8.44 16 4 C 0.53 8.40 7.85 -10.86 -0.09 8.32 16 5 O -0.53 -10.27 17.59 5.56 0.10 -10.17 16 6 C -0.14 -1.82 6.10 -26.74 -0.16 -1.99 16 7 C -0.12 -1.60 3.43 -90.14 -0.31 -1.91 16 8 H 0.11 1.09 8.13 -51.93 -0.42 0.67 16 9 C 0.52 9.40 4.52 -10.99 -0.05 9.35 16 10 O -0.55 -12.27 14.63 5.55 0.08 -12.19 16 11 N -0.70 -13.52 5.07 -54.93 -0.28 -13.80 16 12 C 0.27 6.55 2.56 -69.08 -0.18 6.37 16 13 H 0.04 1.28 7.58 -51.93 -0.39 0.88 16 14 C -0.14 -3.34 9.00 37.16 0.33 -3.01 16 15 C -0.53 -13.71 8.73 -34.44 -0.30 -14.01 16 16 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 18 N -0.88 -24.57 11.32 55.43 0.63 -23.94 16 19 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 C 0.19 2.31 3.42 -68.16 -0.23 2.08 16 24 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 25 C -0.11 -1.39 3.50 -104.62 -0.37 -1.76 16 26 C -0.08 -1.28 5.32 -39.58 -0.21 -1.49 16 27 C -0.10 -1.56 7.98 -39.58 -0.32 -1.87 16 28 C -0.11 -1.46 9.70 -39.59 -0.38 -1.84 16 29 C -0.09 -1.08 5.88 -104.62 -0.62 -1.70 16 30 C -0.11 -1.12 10.01 36.01 0.36 -0.76 16 31 C -0.10 -1.25 9.35 -39.58 -0.37 -1.62 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 36 H 0.08 0.94 6.04 -51.93 -0.31 0.62 16 37 H 0.11 1.70 7.67 -51.93 -0.40 1.30 16 38 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.39 6.56 8.53 -40.82 -0.35 6.21 16 40 H 0.02 0.51 5.48 -51.93 -0.28 0.22 16 41 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.12 2.17 6.53 -52.49 -0.34 1.82 16 45 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 46 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 49 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 50 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -32.47 397.52 -9.32 -41.79 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.84 Total: 9.38 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -2.62 Total: -3.96 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.01 Total: -46.18 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.18 Total: -22.36 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.47 -9.32 -41.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878534159.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.478 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds