Wall clock time and date at job start Wed Apr 1 2020 03:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47002 * 2 1 4 4 C 1.34425 * 124.34594 * 270.02526 * 3 2 1 5 5 O 1.21276 * 124.94105 * 0.40029 * 4 3 2 6 6 C 1.51276 * 110.11312 * 180.38695 * 4 3 2 7 7 C 1.54630 * 104.19855 * 16.24845 * 6 4 3 8 8 H 1.08998 * 110.96549 * 217.08575 * 7 6 4 9 9 C 1.50696 * 110.96837 * 93.32333 * 7 6 4 10 10 O 1.21285 * 120.00064 * 327.12665 * 9 7 6 11 11 N 1.34774 * 120.00108 * 147.12692 * 9 7 6 12 12 C 1.46496 * 120.00371 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.46953 * 34.99487 * 12 11 9 14 14 C 1.53007 * 109.46723 * 275.00190 * 12 11 9 15 15 C 1.50694 * 109.47621 * 154.99973 * 12 11 9 16 16 H 1.08000 * 119.99482 * 0.02562 * 15 12 11 17 17 C 1.37877 * 120.00495 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99597 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00333 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46949 * 60.00243 * 19 17 15 21 21 H 1.48500 * 109.46889 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46842 * 300.00238 * 19 17 15 23 23 C 1.46759 * 124.35217 * 89.99291 * 3 2 1 24 24 H 1.08999 * 110.24908 * 282.09565 * 23 3 2 25 25 C 1.50703 * 110.24382 * 44.01079 * 23 3 2 26 26 C 1.38257 * 120.00030 * 32.66575 * 25 23 3 27 27 C 1.38214 * 120.00020 * 179.70286 * 26 25 23 28 28 C 1.38255 * 119.99675 * 359.97438 * 27 26 25 29 29 C 1.38208 * 120.00610 * 0.02562 * 28 27 26 30 30 C 1.50700 * 120.00454 * 180.02562 * 29 28 27 31 31 C 1.38211 * 119.99618 * 212.39051 * 25 23 3 32 32 H 1.09003 * 109.46916 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47372 * 300.00482 * 1 2 3 34 34 H 1.08992 * 109.46935 * 60.00434 * 1 2 3 35 35 H 1.08993 * 109.47162 * 239.99845 * 2 1 3 36 36 H 1.09001 * 109.46913 * 119.99301 * 2 1 3 37 37 H 1.08998 * 110.48797 * 134.92928 * 6 4 3 38 38 H 1.09006 * 110.48160 * 257.43666 * 6 4 3 39 39 H 0.97003 * 119.99703 * 0.02562 * 11 9 7 40 40 H 1.08995 * 109.47450 * 59.99691 * 14 12 11 41 41 H 1.09004 * 109.46745 * 179.97438 * 14 12 11 42 42 H 1.08997 * 109.47288 * 299.99238 * 14 12 11 43 43 H 0.97003 * 120.00060 * 179.97438 * 18 17 15 44 44 H 1.07996 * 119.99997 * 359.72094 * 26 25 23 45 45 H 1.07998 * 119.99946 * 180.02562 * 27 26 25 46 46 H 1.08008 * 119.99937 * 180.02562 * 28 27 26 47 47 H 1.08998 * 109.47336 * 89.99611 * 30 29 28 48 48 H 1.09002 * 109.47299 * 210.00071 * 30 29 28 49 49 H 1.08999 * 109.46953 * 329.99605 * 30 29 28 50 50 H 1.07997 * 120.00603 * 0.27913 * 31 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2707 2.0965 -1.1099 5 8 2.1207 1.6946 -2.2442 6 6 2.7686 3.4757 -0.7380 7 6 3.1739 3.3445 0.7485 8 1 2.9299 4.2520 1.3008 9 6 4.6378 3.0121 0.8810 10 8 5.1827 2.3278 0.0409 11 7 5.3414 3.4752 1.9331 12 6 6.7646 3.1525 2.0617 13 1 7.2198 3.1164 1.0719 14 6 6.9194 1.7919 2.7442 15 6 7.4468 4.2105 2.8900 16 1 6.8770 5.0401 3.2819 17 6 8.7980 4.1189 3.1485 18 7 9.4916 3.1084 2.6717 19 14 9.6438 5.4308 4.1747 20 1 9.0232 5.4810 5.5229 21 1 11.0864 5.1036 4.3051 22 1 9.4940 6.7510 3.5114 23 6 2.2942 2.1621 1.2116 24 1 1.3634 2.5293 1.6439 25 6 3.0386 1.3206 2.2161 26 6 3.9234 0.3499 1.7843 27 6 4.6107 -0.4177 2.7056 28 6 4.4136 -0.2145 4.0589 29 6 3.5291 0.7557 4.4905 30 6 3.3148 0.9776 5.9656 31 6 2.8408 1.5230 3.5689 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5137 0.8901 37 1 3.6316 3.7466 -1.3462 38 1 1.9739 4.2125 -0.8553 39 1 4.9054 4.0221 2.6052 40 1 6.4260 1.0266 2.1451 41 1 7.9783 1.5516 2.8394 42 1 6.4642 1.8280 3.7339 43 1 10.4423 3.0441 2.8532 44 1 4.0779 0.1918 0.7272 45 1 5.3022 -1.1756 2.3684 46 1 4.9510 -0.8141 4.7789 47 1 4.0240 1.7217 6.3280 48 1 2.2980 1.3315 6.1359 49 1 3.4672 0.0398 6.4999 50 1 2.1496 2.2811 3.9062 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878534159.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:02 Heat of formation + Delta-G solvation = -67.256538 kcal Electronic energy + Delta-G solvation = -32487.408069 eV Core-core repulsion = 28478.382216 eV Total energy + Delta-G solvation = -4009.025853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.39245 -40.10488 -39.81562 -37.59448 -36.56318 -34.89228 -34.20969 -33.58251 -32.39327 -31.17866 -30.20287 -28.09934 -27.56304 -27.24402 -25.27799 -24.10766 -23.09539 -22.51309 -21.71926 -20.93379 -20.13551 -19.04655 -18.03372 -17.69307 -17.36064 -17.06126 -16.61544 -16.40454 -16.15421 -15.82989 -15.70736 -15.31800 -14.91014 -14.68146 -14.48154 -14.41778 -14.32189 -14.20559 -13.90788 -13.88298 -13.56334 -13.24340 -13.19485 -13.01741 -12.89239 -12.82699 -12.79806 -12.72135 -12.64855 -12.40917 -12.14210 -12.10473 -12.01354 -11.82994 -11.81961 -11.03790 -10.86827 -10.64372 -10.49938 -9.84107 -9.60895 -9.55388 -9.34906 -8.12955 -6.29997 0.44213 0.58555 1.45577 1.47423 1.52816 1.54842 1.86168 2.03868 2.36961 2.63953 2.85779 3.17476 3.26672 3.46119 3.71455 3.89394 3.98629 4.05105 4.08897 4.10887 4.27519 4.32751 4.45693 4.47407 4.51581 4.59925 4.68140 4.75896 4.77323 4.82968 4.86560 4.90259 4.96677 4.97355 5.05892 5.11798 5.22654 5.23604 5.27275 5.38026 5.48864 5.52672 5.66993 5.68821 5.72939 5.78560 5.80711 6.00072 6.09682 6.18288 6.20538 6.79089 7.08215 7.13004 7.38168 7.68559 8.92330 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.004299 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.587615 B = 6511.510208 C = 7825.388045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.116 3.884 3 N -0.604 5.604 4 C 0.518 3.482 5 O -0.584 6.584 6 C -0.132 4.132 7 C -0.112 4.112 8 H 0.165 0.835 9 C 0.513 3.487 10 O -0.596 6.596 11 N -0.693 5.693 12 C 0.279 3.721 13 H -0.014 1.014 14 C -0.117 4.117 15 C -0.541 4.541 16 H 0.074 0.926 17 C 0.015 3.985 18 N -0.919 5.919 19 Si 0.967 3.033 20 H -0.262 1.262 21 H -0.291 1.291 22 H -0.271 1.271 23 C 0.195 3.805 24 H 0.148 0.852 25 C -0.107 4.107 26 C -0.100 4.100 27 C -0.127 4.127 28 C -0.119 4.119 29 C -0.089 4.089 30 C -0.109 4.109 31 C -0.096 4.096 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.155 0.845 39 H 0.403 0.597 40 H 0.022 0.978 41 H 0.049 0.951 42 H 0.033 0.967 43 H 0.262 0.738 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.123 0.877 47 H 0.068 0.932 48 H 0.087 0.913 49 H 0.068 0.932 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.882 -1.181 7.337 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.005 4.005 3 N -0.336 5.336 4 C 0.308 3.692 5 O -0.464 6.464 6 C -0.172 4.172 7 C -0.133 4.133 8 H 0.182 0.818 9 C 0.300 3.700 10 O -0.477 6.477 11 N -0.340 5.340 12 C 0.175 3.825 13 H 0.004 0.996 14 C -0.176 4.176 15 C -0.579 4.579 16 H 0.092 0.908 17 C -0.185 4.185 18 N -0.558 5.558 19 Si 0.792 3.208 20 H -0.186 1.186 21 H -0.217 1.217 22 H -0.196 1.196 23 C 0.092 3.908 24 H 0.165 0.835 25 C -0.108 4.108 26 C -0.119 4.119 27 C -0.145 4.145 28 C -0.137 4.137 29 C -0.089 4.089 30 C -0.166 4.166 31 C -0.114 4.114 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.173 0.827 39 H 0.238 0.762 40 H 0.040 0.960 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.121 0.879 46 H 0.141 0.859 47 H 0.086 0.914 48 H 0.106 0.894 49 H 0.087 0.913 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.398 -2.032 6.182 21.411 hybrid contribution 1.598 0.124 0.010 1.603 sum -18.800 -1.908 6.192 19.886 Atomic orbital electron populations 1.22037 0.93472 1.03249 1.02409 1.21452 0.95854 0.80834 1.02370 1.48333 1.64641 1.14052 1.06546 1.21199 0.75242 0.88794 0.83980 1.90652 1.56133 1.76670 1.22993 1.22301 1.04104 0.95666 0.95122 1.22575 0.90681 1.01886 0.98179 0.81763 1.20659 0.89119 0.79218 0.81053 1.90678 1.72680 1.40825 1.43542 1.46122 1.11247 1.51929 1.24742 1.18183 0.76992 0.93355 0.93935 0.99627 1.21799 1.00799 0.97098 0.97859 1.21540 0.94310 1.08848 1.33238 0.90767 1.25756 0.98071 0.97744 0.96942 1.70080 1.08067 1.31628 1.46014 0.85480 0.76940 0.79005 0.79403 1.18625 1.21736 1.19619 1.20722 0.98136 0.88490 0.83450 0.83493 1.19828 0.98590 0.97595 0.94768 1.20770 0.96337 0.96528 0.98218 1.21038 0.99144 1.00170 0.94139 1.21158 0.98512 0.99073 0.94957 1.20126 0.96062 0.95310 0.97368 1.20798 1.03316 1.02646 0.89809 1.21054 1.00263 0.99585 0.90491 0.90154 0.90549 0.93648 0.92814 0.89570 0.89680 0.82728 0.76170 0.95954 0.93230 0.94770 0.92914 0.89461 0.87851 0.85889 0.91359 0.89382 0.91275 0.82196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.24 71.98 0.74 -1.90 16 2 C 0.12 2.74 5.70 86.38 0.49 3.23 16 3 N -0.60 -15.34 2.15 -798.32 -1.72 -17.06 16 4 C 0.52 16.26 7.85 87.89 0.69 16.95 16 5 O -0.58 -23.40 17.59 -3.02 -0.05 -23.45 16 6 C -0.13 -3.23 6.10 30.59 0.19 -3.04 16 7 C -0.11 -2.52 3.43 -10.48 -0.04 -2.56 16 8 H 0.16 2.07 8.13 -2.39 -0.02 2.05 16 9 C 0.51 18.42 4.52 87.66 0.40 18.81 16 10 O -0.60 -28.13 14.63 -3.04 -0.04 -28.18 16 11 N -0.69 -26.08 5.07 -446.10 -2.26 -28.34 16 12 C 0.28 13.93 2.56 44.25 0.11 14.04 16 13 H -0.01 -0.87 7.58 -2.39 -0.02 -0.89 16 14 C -0.12 -5.73 9.00 71.98 0.65 -5.08 16 15 C -0.54 -27.67 8.73 25.60 0.22 -27.45 16 16 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 17 C 0.01 0.77 5.30 84.65 0.45 1.22 16 18 N -0.92 -52.83 11.32 21.45 0.24 -52.59 16 19 Si 0.97 41.30 29.54 68.60 2.03 43.33 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 23 C 0.20 3.89 3.42 44.70 0.15 4.04 16 24 H 0.15 1.56 8.08 -2.39 -0.02 1.54 16 25 C -0.11 -2.55 3.50 -19.87 -0.07 -2.61 16 26 C -0.10 -3.14 5.32 22.27 0.12 -3.02 16 27 C -0.13 -3.96 7.98 22.27 0.18 -3.78 16 28 C -0.12 -3.18 9.70 22.27 0.22 -2.96 16 29 C -0.09 -1.94 5.88 -19.86 -0.12 -2.06 16 30 C -0.11 -1.74 10.01 71.24 0.71 -1.02 16 31 C -0.10 -1.86 9.35 22.27 0.21 -1.65 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 1.53 7.93 -2.39 -0.02 1.51 16 36 H 0.09 1.96 6.04 -2.39 -0.01 1.94 16 37 H 0.08 2.60 7.67 -2.39 -0.02 2.58 16 38 H 0.16 2.32 8.14 -2.38 -0.02 2.30 16 39 H 0.40 12.37 8.53 -92.71 -0.79 11.58 16 40 H 0.02 1.06 5.48 -2.39 -0.01 1.04 16 41 H 0.05 2.76 6.07 -2.39 -0.01 2.74 16 42 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.09 3.34 6.53 -2.91 -0.02 3.32 16 45 H 0.10 3.33 8.06 -2.91 -0.02 3.31 16 46 H 0.12 3.00 8.06 -2.91 -0.02 2.97 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.09 0.97 8.09 -2.39 -0.02 0.95 16 49 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 50 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -78.48 397.52 3.65 -74.83 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.16 Total: 30.31 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 5.30 Total: 1.15 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -3.73 Total: -97.99 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -0.10 Total: -51.63 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -78.48 3.65 -74.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878534159.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.575 kcal (2) G-P(sol) polarization free energy of solvation -78.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds