Wall clock time and date at job start Wed Apr 1 2020 03:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47231 * 2 1 4 4 C 1.34417 * 124.35138 * 269.97656 * 3 2 1 5 5 O 1.21289 * 124.93707 * 0.40348 * 4 3 2 6 6 C 1.51276 * 110.11855 * 180.42465 * 4 3 2 7 7 C 1.54861 * 104.21045 * 16.26903 * 6 4 3 8 8 H 1.09000 * 111.03999 * 217.09803 * 7 6 4 9 9 C 1.50697 * 111.00093 * 93.26212 * 7 6 4 10 10 O 1.21279 * 119.99948 * 247.73795 * 9 7 6 11 11 N 1.34774 * 120.00106 * 67.73165 * 9 7 6 12 12 C 1.46498 * 120.00257 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.46744 * 35.00647 * 12 11 9 14 14 C 1.52997 * 109.47196 * 275.00434 * 12 11 9 15 15 C 1.50704 * 109.46907 * 155.00194 * 12 11 9 16 16 H 1.07998 * 120.00121 * 35.00631 * 15 12 11 17 17 C 1.37876 * 119.99894 * 215.00251 * 15 12 11 18 18 N 1.31513 * 120.00374 * 184.91696 * 17 15 12 19 19 Si 1.86806 * 120.00043 * 4.91876 * 17 15 12 20 20 H 1.48504 * 109.47031 * 84.83256 * 19 17 15 21 21 H 1.48503 * 109.47227 * 204.83285 * 19 17 15 22 22 H 1.48499 * 109.47163 * 324.83116 * 19 17 15 23 23 C 1.46764 * 124.35024 * 89.99529 * 3 2 1 24 24 H 1.08999 * 110.24235 * 43.88033 * 23 3 2 25 25 C 1.50696 * 110.24816 * 281.96709 * 23 3 2 26 26 C 1.38254 * 120.00011 * 322.90820 * 25 23 3 27 27 C 1.38220 * 120.00098 * 180.23346 * 26 25 23 28 28 C 1.38251 * 119.99626 * 359.48804 * 27 26 25 29 29 C 1.38207 * 120.00289 * 0.25855 * 28 27 26 30 30 C 1.50703 * 120.00031 * 180.02562 * 29 28 27 31 31 C 1.38215 * 119.99945 * 142.62965 * 25 23 3 32 32 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47161 * 300.00001 * 1 2 3 34 34 H 1.08999 * 109.47239 * 59.99730 * 1 2 3 35 35 H 1.08993 * 109.47456 * 239.99568 * 2 1 3 36 36 H 1.08999 * 109.47132 * 119.99491 * 2 1 3 37 37 H 1.09010 * 110.48524 * 134.93148 * 6 4 3 38 38 H 1.08998 * 110.49144 * 257.57257 * 6 4 3 39 39 H 0.97008 * 119.99573 * 0.02562 * 11 9 7 40 40 H 1.08998 * 109.47260 * 55.03182 * 14 12 11 41 41 H 1.09003 * 109.46980 * 175.03454 * 14 12 11 42 42 H 1.09002 * 109.46939 * 295.03063 * 14 12 11 43 43 H 0.96999 * 120.00286 * 180.02562 * 18 17 15 44 44 H 1.08004 * 120.00128 * 359.97438 * 26 25 23 45 45 H 1.07996 * 119.99970 * 179.76119 * 27 26 25 46 46 H 1.08005 * 119.99551 * 180.27708 * 28 27 26 47 47 H 1.09000 * 109.47141 * 89.99879 * 30 29 28 48 48 H 1.09003 * 109.46840 * 209.99545 * 30 29 28 49 49 H 1.08997 * 109.47127 * 329.99559 * 30 29 28 50 50 H 1.07995 * 120.00283 * 0.02562 * 31 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2716 2.0962 -1.1097 5 8 2.1224 1.6939 -2.2442 6 6 2.7702 3.4751 -0.7378 7 6 3.1759 3.3440 0.7509 8 1 2.9326 4.2510 1.3042 9 6 4.6392 3.0095 0.8844 10 8 4.9770 1.9249 1.3093 11 7 5.5725 3.9155 0.5316 12 6 6.9950 3.5906 0.6619 13 1 7.1478 2.5337 0.4430 14 6 7.4573 3.8877 2.0898 15 6 7.7917 4.4248 -0.3079 16 1 7.4845 5.4362 -0.5294 17 6 8.9127 3.8967 -0.9124 18 7 9.6626 4.6539 -1.6832 19 14 9.3666 2.1058 -0.6367 20 1 8.6183 1.2524 -1.5944 21 1 10.8254 1.9264 -0.8491 22 1 9.0169 1.7147 0.7525 23 6 2.2943 2.1620 1.2117 24 1 2.8306 1.5526 1.9390 25 6 1.0076 2.6724 1.8076 26 6 -0.0215 3.0839 0.9812 27 6 -1.1998 3.5566 1.5277 28 6 -1.3532 3.6077 2.9007 29 6 -0.3264 3.1914 3.7269 30 6 -0.4939 3.2467 5.2235 31 6 0.8543 2.7235 3.1802 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5137 0.8900 37 1 3.6336 3.7454 -1.3458 38 1 1.9755 4.2122 -0.8532 39 1 5.3022 4.7831 0.1921 40 1 6.8231 3.3518 2.7959 41 1 8.4910 3.5641 2.2117 42 1 7.3872 4.9589 2.2789 43 1 10.4510 4.2823 -2.1088 44 1 0.0968 3.0401 -0.0914 45 1 -2.0022 3.8817 0.8822 46 1 -2.2756 3.9729 3.3278 47 1 -0.9153 2.3056 5.5770 48 1 0.4769 3.4086 5.6920 49 1 -1.1642 4.0656 5.4841 50 1 1.6566 2.3982 3.8258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878534161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:14 Heat of formation + Delta-G solvation = -54.784908 kcal Electronic energy + Delta-G solvation = -31200.635041 eV Core-core repulsion = 27192.149999 eV Total energy + Delta-G solvation = -4008.485042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.34793 -39.26532 -38.74617 -36.45401 -34.94249 -34.03466 -32.89017 -32.39842 -31.55147 -30.32212 -29.11220 -27.29957 -27.15603 -25.36945 -24.30816 -23.06670 -22.28150 -21.17792 -20.59923 -19.63071 -19.14810 -17.86538 -17.14702 -16.61972 -16.22121 -15.86613 -15.55127 -15.28796 -15.02994 -14.76393 -14.37088 -14.18151 -14.09276 -13.93025 -13.56724 -13.40722 -13.29851 -13.20684 -12.82237 -12.59768 -12.53290 -12.49562 -12.46115 -12.20023 -11.96917 -11.83889 -11.58174 -11.49396 -11.24751 -11.18918 -11.12553 -11.09679 -10.84499 -10.61712 -9.91012 -9.75932 -9.33134 -9.24722 -9.00936 -8.90878 -8.72830 -8.69162 -8.18567 -6.26348 -4.30573 1.07031 1.16588 2.61207 2.92628 3.06567 3.25109 3.32859 3.39032 3.45303 3.78211 4.29876 4.30195 4.35490 4.47392 4.60856 4.69105 4.79718 4.91496 4.97222 5.04905 5.08266 5.14289 5.20417 5.22333 5.29979 5.32687 5.38683 5.44233 5.51001 5.55731 5.63206 5.68863 5.72813 5.79849 5.83209 5.91197 6.06602 6.23007 6.28679 6.31396 6.35375 6.46073 6.60581 6.62502 6.76990 6.87584 7.10493 7.12711 7.31269 7.48502 8.06398 8.19284 8.48839 8.72901 8.84966 9.35352 10.85262 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.003278 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.394678 B = 8541.012716 C = 9474.377791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.125 3.875 3 N -0.603 5.603 4 C 0.521 3.479 5 O -0.530 6.530 6 C -0.149 4.149 7 C -0.117 4.117 8 H 0.121 0.879 9 C 0.509 3.491 10 O -0.551 6.551 11 N -0.698 5.698 12 C 0.231 3.769 13 H 0.050 0.950 14 C -0.147 4.147 15 C -0.532 4.532 16 H 0.080 0.920 17 C 0.082 3.918 18 N -0.887 5.887 19 Si 0.873 3.127 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.261 1.261 23 C 0.188 3.812 24 H 0.114 0.886 25 C -0.089 4.089 26 C -0.104 4.104 27 C -0.117 4.117 28 C -0.120 4.120 29 C -0.086 4.086 30 C -0.115 4.115 31 C -0.105 4.105 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.394 0.606 40 H 0.028 0.972 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.268 0.732 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.065 0.935 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.994 -2.458 10.825 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.003 3.997 3 N -0.336 5.336 4 C 0.309 3.691 5 O -0.406 6.406 6 C -0.189 4.189 7 C -0.139 4.139 8 H 0.139 0.861 9 C 0.293 3.707 10 O -0.430 6.430 11 N -0.345 5.345 12 C 0.129 3.871 13 H 0.068 0.932 14 C -0.206 4.206 15 C -0.570 4.570 16 H 0.098 0.902 17 C -0.122 4.122 18 N -0.523 5.523 19 Si 0.699 3.301 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.185 1.185 23 C 0.083 3.917 24 H 0.132 0.868 25 C -0.091 4.091 26 C -0.123 4.123 27 C -0.135 4.135 28 C -0.138 4.138 29 C -0.086 4.086 30 C -0.171 4.171 31 C -0.124 4.124 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.228 0.772 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.135 0.865 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.084 0.916 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -22.615 -3.523 10.381 25.132 hybrid contribution 0.192 -0.385 -0.121 0.447 sum -22.423 -3.908 10.260 24.966 Atomic orbital electron populations 1.22211 0.95869 1.02045 1.02512 1.21307 0.94058 0.80998 1.03307 1.48193 1.65516 1.13502 1.06395 1.20782 0.76423 0.87497 0.84401 1.90723 1.53710 1.75238 1.20939 1.22467 1.04396 0.96563 0.95503 1.22404 0.93933 1.00031 0.97493 0.86076 1.20049 0.86855 0.85203 0.78595 1.90650 1.82170 1.23182 1.47036 1.46627 1.07838 1.17075 1.63001 1.19155 0.76616 0.97599 0.93733 0.93222 1.22212 1.00183 1.00346 0.97821 1.20994 1.10019 1.00895 1.25098 0.90233 1.24934 0.95718 0.97745 0.93834 1.69872 1.15654 1.36157 1.30611 0.86916 0.77652 0.85524 0.79961 1.19812 1.21125 1.18512 1.20357 0.91378 0.92057 0.87894 0.86830 1.20062 0.95624 0.99760 0.93616 1.20953 0.93217 0.98393 0.99689 1.21103 0.97545 0.99754 0.95063 1.21031 0.98569 1.00696 0.93469 1.19881 0.93923 0.98770 0.96051 1.20797 1.02761 1.02260 0.91332 1.20904 0.97420 1.00021 0.94036 0.91772 0.92065 0.92417 0.90031 0.90294 0.86752 0.86958 0.77192 0.95242 0.92889 0.93345 0.92173 0.86472 0.86135 0.86264 0.91226 0.91346 0.91593 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 9.68 37.15 0.36 -1.31 16 2 C 0.12 1.48 6.64 -4.04 -0.03 1.45 16 3 N -0.60 -8.10 2.05 -166.20 -0.34 -8.44 16 4 C 0.52 8.10 6.91 -10.86 -0.08 8.02 16 5 O -0.53 -10.09 17.60 5.55 0.10 -9.99 16 6 C -0.15 -1.91 5.87 -26.62 -0.16 -2.06 16 7 C -0.12 -1.49 3.07 -90.01 -0.28 -1.76 16 8 H 0.12 1.23 7.89 -51.93 -0.41 0.82 16 9 C 0.51 8.97 7.05 -10.99 -0.08 8.89 16 10 O -0.55 -11.63 15.19 5.56 0.08 -11.54 16 11 N -0.70 -13.15 5.00 -54.93 -0.27 -13.42 16 12 C 0.23 5.32 2.22 -69.08 -0.15 5.17 16 13 H 0.05 1.27 4.73 -51.93 -0.25 1.02 16 14 C -0.15 -3.09 9.47 37.16 0.35 -2.74 16 15 C -0.53 -14.00 9.05 -34.44 -0.31 -14.31 16 16 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 17 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 18 N -0.89 -25.94 13.96 55.43 0.77 -25.16 16 19 Si 0.87 21.55 26.99 -169.99 -4.59 16.97 16 20 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.26 -6.30 6.82 56.52 0.39 -5.91 16 23 C 0.19 2.29 2.67 -68.16 -0.18 2.11 16 24 H 0.11 1.53 6.93 -51.93 -0.36 1.17 16 25 C -0.09 -0.92 4.31 -104.63 -0.45 -1.37 16 26 C -0.10 -1.02 7.50 -39.58 -0.30 -1.32 16 27 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 28 C -0.12 -0.97 9.70 -39.59 -0.38 -1.36 16 29 C -0.09 -0.73 5.88 -104.62 -0.62 -1.34 16 30 C -0.11 -0.73 10.01 36.01 0.36 -0.37 16 31 C -0.11 -1.00 9.34 -39.58 -0.37 -1.37 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.61 6.51 -51.93 -0.34 0.27 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.06 7.93 -51.93 -0.41 0.65 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.11 1.60 7.85 -51.92 -0.41 1.20 16 38 H 0.11 1.10 7.96 -51.93 -0.41 0.69 16 39 H 0.39 6.46 8.59 -40.82 -0.35 6.11 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.12 1.22 6.30 -52.48 -0.33 0.89 16 45 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 46 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.41 8.09 -51.93 -0.42 0.00 16 49 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 50 H 0.13 1.10 8.05 -52.49 -0.42 0.67 16 LS Contribution 405.10 15.07 6.10 6.10 Total: -1.00 -33.27 405.10 -8.85 -42.12 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.91 Total: 6.24 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -2.80 Total: -2.86 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.16 Total: -47.03 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.18 Total: -21.54 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.59 Total: 16.97 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.27 -8.85 -42.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878534161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.663 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds